mRNA_A-nodosum_M_contig8894.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8894.3.1
Unique NamemRNA_A-nodosum_M_contig8894.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8894.3.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 2.280e-5
Identity = 23/25 (92.00%), Postives = 23/25 (92.00%), Query Frame = 2 
Query:   89 KYAEAEPLYERSQAILEKALGPEHP 163
            KYAEAEPLYERSQAI EK LGPEHP
Sbjct:  293 KYAEAEPLYERSQAIREKMLGPEHP 317
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BLAST of mRNA_A-nodosum_M_contig8894.3.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 4.310e-5
Identity = 22/26 (84.62%), Postives = 24/26 (92.31%), Query Frame = 2 
Query:   86 AKYAEAEPLYERSQAILEKALGPEHP 163
            +KYAEAEPLYERS+AI EK LGPEHP
Sbjct:  677 SKYAEAEPLYERSRAIQEKVLGPEHP 702
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BLAST of mRNA_A-nodosum_M_contig8894.3.1 vs. uniprot
Match: A0A6H5L226_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L226_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 5.840e-5
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 2 
Query:   41 GV*SDSALSPTYLRGAKYAEAEPLYERSQAILEKALGPEHP 163
            GV    +++ T ++G K+AEAEPLYERSQAI EK LGP+HP
Sbjct:  353 GVLKFRSITDTAVQG-KHAEAEPLYERSQAIREKVLGPKHP 392
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BLAST of mRNA_A-nodosum_M_contig8894.3.1 vs. uniprot
Match: A0A6H5JIH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIH9_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 5.910e-5
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 2 
Query:   77 LRGAKYAEAEPLYERSQAILEKALGPEHP 163
            LR  K+ EAEPLYERSQAI EK LGP+HP
Sbjct:    6 LRAGKHVEAEPLYERSQAIPEKVLGPQHP 34
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BLAST of mRNA_A-nodosum_M_contig8894.3.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 8.020e-5
Identity = 22/25 (88.00%), Postives = 22/25 (88.00%), Query Frame = 2 
Query:   89 KYAEAEPLYERSQAILEKALGPEHP 163
            KYAEAEPLYERSQAI E  LGPEHP
Sbjct:  662 KYAEAEPLYERSQAIQENVLGPEHP 686
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8894.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KIY6_9PHAE2.280e-592.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G720_ECTSI4.310e-584.62NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5L226_9PHAE5.840e-560.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIH9_9PHAE5.910e-575.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXS7_9PHAE8.020e-588.00NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8894contigA-nodosum_M_contig8894:6507..7449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size164
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size117
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870305.8784244-CDS-A-nodosum_M_contig8894:6506..65911680870305.8784244-CDS-A-nodosum_M_contig8894:6506..6591Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8894 6507..6591 +
1680870305.8915243-CDS-A-nodosum_M_contig8894:7370..74021680870305.8915243-CDS-A-nodosum_M_contig8894:7370..7402Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8894 7371..7402 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870305.901762-UTR-A-nodosum_M_contig8894:7402..74491680870305.901762-UTR-A-nodosum_M_contig8894:7402..7449Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8894 7403..7449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8894.3.1prot_A-nodosum_M_contig8894.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8894 6507..7402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8894.3.1

>prot_A-nodosum_M_contig8894.3.1 ID=prot_A-nodosum_M_contig8894.3.1|Name=mRNA_A-nodosum_M_contig8894.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=39bp
MRPSRSSYNIRTQRGIKRQCTLTYIFTRGQVCGGRATL*
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mRNA from alignment at A-nodosum_M_contig8894:6507..7449+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8894.3.1 ID=mRNA_A-nodosum_M_contig8894.3.1|Name=mRNA_A-nodosum_M_contig8894.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=943bp|location=Sequence derived from alignment at A-nodosum_M_contig8894:6507..7449+ (Ascophyllum nodosum dioecious)
ATGCGGCCGAGTCGCTCAAGTTACAACATCCGAACACAGAGGGGTATAAA
GCGACAGTGCACTCTCACCTACATATTTACGAGGGGTGGGTATAGACTCT
GTGGCAAAACTATCATCGGCGGAATTGAGCAATGACGGTTGCCAGGCAGA
AATATTTGGGTTTTGGTGTCCTTTGCTGGGAGCGGAAAATTATTCGTGCG
GAGAAAATAGCCGGTGGAAGAATCCCACTCCCCGCCAGGTCAGGGTACAT
TTCTGAAAATCGGGGTACAATTCTGAAAAAAAGTAGACGTGGCAGGGTTT
ACCCCGCCGTTTTTCGGACACGGCAGGGTGAATGTGGGCGTCGACCAATC
AGCTGTGTCCGTTTCACGCTGAAAATAAGTAGGTACCCTGCTGTGTTGCG
TTTTGACCAGGGCATACCCTGTTGTGACGTTAACCCAATTTTGAATAATA
TTACTTGACGAGGCAGTACGACAAGGCGGGCCCTCTATATGTTCGAGCTA
CTTGTATTGAGATTTAATTGGGGAGAAGGTCGTGGTTGTTGAGAATTTGT
TCCTCCGCTGTTCGCTCTACTGGCCTTGATCACACTCCTATCGCGTTTCT
CCCCTACAATAATATTAATATCATTACTCATAGGGCAAGTACGAGGAGGC
GAAACCGTTGTACAAGCGCTCGCTTGCTATCGATGAGATCTACGGTTCTG
ACCACCCAGAGATCGCTACAGACCTCAACAACTGGGCGAGGTTGTTGAGT
CAGATGAGATTGGAATGATTTTCTCGGGAATTTCCTAAAGTCCATATTTC
TCGGTATAATATTTTGTTTTTGGGTGGAGCACTGCCTTACAACAACCCAC
TACTTCTGCCACAGGCCAAGTATGCGGAGGCCGAGCCACTTTATGAGCGG
TCACAGGCTATACTAGAGAAGGCCTTGGGTCCGGAGCACCCTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8894:6507..7449+

>mRNA_A-nodosum_M_contig8894.3.1 ID=mRNA_A-nodosum_M_contig8894.3.1|Name=mRNA_A-nodosum_M_contig8894.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=117bp|location=Sequence derived from alignment at A-nodosum_M_contig8894:6507..7449+ (Ascophyllum nodosum dioecious)
ATGCGGCCGAGTCGCTCAAGTTACAACATCCGAACACAGAGGGGTATAAA
GCGACAGTGCACTCTCACCTACATATTTACGAGGGGCCAAGTATGCGGAG
GCCGAGCCACTTTATGA
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