mRNA_A-nodosum_M_contig8894.1.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig8894.1.2 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE) HSP 1 Score: 473 bits (1217), Expect = 9.390e-143 Identity = 256/359 (71.31%), Postives = 288/359 (80.22%), Query Frame = 1
Query: 223 VLSVLGAFERLREAVESAQNFPSTIKDRLVDGESVLQQLHRDPRHVARIGIERDLADLNDLADRIKNLVQNHTAAPGASRRMRMRKAITRSFRHKELEKELQEIDDDIRRVLQAISTKGTIGPLLPPPLPDMAEVPDGALPEPRS-YVERPCVQKAVDDLIKPEDPRAPYTIVGMGGGGKTVLASAVVRKQSVREHFRGGIFWIKVGRRVKNKLLSLLKPLAREMGAAPTDAPHGVPHVFDSLEQVKQHLTTVASTGTSPRLVVLDDVWEREVVDTLLPLGLKLLVTTRDRSVVGVPGECLELGDMTEDKALELLLKTSMTVGQPGDDVLTQMTKVVTLCGRLPLVLAIAGSNTVVKGR 1296
V+SVLGA R REAVESA NFP+TI+DRL SVL+QL RDPR V RIGI R+L L +LA RI+ LVQ+HTA+P S R+ K+ITR RHKELEK+LQ ID D+RRVL AIS KG G +LPP LPDMA+VP A+ S YVER V+K D + PE+PRAPYT+ GMGGGGK+VLASAVVRK SVREHFRGGIFW+ VGR K +LL LL+ L +MGAAPTD PHGVPHV DSLEQV++HL VASTGTSPRLVVLDDVWEREVVD LLPLG K+LVTTRDRSVVGVP CLELGDMTE++ALELLLKTS TVG+PGD V T MTKVVTLCGRLPLVLAIAGS VVKG+
Sbjct: 5 VVSVLGALGRAREAVESAHNFPTTIQDRLAGTASVLEQLQRDPRQVNRIGISRELGQLENLAIRIQTLVQDHTASPTDSCCKRLCKSITRCSRHKELEKQLQGIDGDVRRVLDAISAKGATGTVLPPSLPDMAKVPAEAVALSDSLYVERAAVRKVADGITNPEEPRAPYTVFGMGGGGKSVLASAVVRKSSVREHFRGGIFWLTVGRGAKKRLLPLLQGLTGDMGAAPTDTPHGVPHVLDSLEQVQRHLGAVASTGTSPRLVVLDDVWEREVVDALLPLGFKVLVTTRDRSVVGVPTRCLELGDMTEEEALELLLKTSGTVGRPGDSVRTVMTKVVTLCGRLPLVLAIAGSLPVVKGK 363
BLAST of mRNA_A-nodosum_M_contig8894.1.2 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE) HSP 1 Score: 347 bits (889), Expect = 1.600e-102 Identity = 178/227 (78.41%), Postives = 195/227 (85.90%), Query Frame = 1
Query: 616 MAEVPDGALPEPRSYVERPCVQKAVDDLIKPEDPRAPYTIVGMGGGGKTVLASAVVRKQSVREHFRGGIFWIKVGRRVKNKLLSLLKPLAREMGAAPTDAPHGVPHVFDSLEQVKQHLTTVASTGTSPRLVVLDDVWEREVVDTLLPLGLKLLVTTRDRSVVGVPGECLELGDMTEDKALELLLKTSMTVGQPGDDVLTQMTKVVTLCGRLPLVLAIAGSNTVVKGR 1296
MA VP GAL P+SYVER VQ+ D LIKPE+PRAPY +VGMGGGGKT+L SAVVRK +VREHFRGG+FW++VGR KN LLSLL+ LAREM AAPTD PHGVPHV +SLEQVKQHL TVAS GTSPRLVVLDDVWEREVVD LL LGLK+LVTTRDRSVVGV G LELGDMTE++ALELLLKTS TVGQPG +V TQMTKVV LCG LPLVLAIAGS +VVKG+
Sbjct: 1 MAAVPAGALTLPQSYVERAAVQEVADGLIKPEEPRAPYAVVGMGGGGKTMLVSAVVRKSNVREHFRGGVFWMRVGRHAKNSLLSLLQGLAREMSAAPTDTPHGVPHVLESLEQVKQHLATVASAGTSPRLVVLDDVWEREVVDALLSLGLKVLVTTRDRSVVGVSGGLLELGDMTEEEALELLLKTSRTVGQPGHEVRTQMTKVVVLCGHLPLVLAIAGSMSVVKGK 227
BLAST of mRNA_A-nodosum_M_contig8894.1.2 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 337 bits (865), Expect = 2.190e-97 Identity = 205/374 (54.81%), Postives = 244/374 (65.24%), Query Frame = 1
Query: 214 LGLVLSVLGAFERLREAVESAQNFPSTIKDRLVDGESVLQQLHRDPRHVARIGIE--RDLADLNDLADRIKNLVQNHTAAPGASRRMRMRKAITRSFRHKELEKELQEIDDDIRRVLQAI----------STKGTIGPLLPPPLPDMAEVPDGALPEP-RSYVERPCVQKAVDDLIKPEDPRAPYTIVGMGGGGKTVLASAVVRKQSVREHFRGGIFWIKVGRRVKNKLLSLLKPLAREMGAAPTDAPHGVPHVFDSLEQVKQHLTTVASTGTSPRLVVLDDVWEREVVDTLLPLGLKLLVTTRDRSVVGVPGECLELGDMTEDKALELLLKTSMTVGQPGDDVLTQMTKVVTLCGRLPLVLAIAGSNTVVKGR 1296
+G ++ V AF+ L EA E A + + LQ L +A + I+ R + L + I++ V G + R F H+ L + ++ +RR+ I S + LLPP LPDMA VP GAL P SYVER VQ+ D L PEDPRAPYT+VGMGGGGK+VLASAVVRK SVREHFRGGIFW++VGR K+ LL+LL+ LAREMGAA TDAPH VPHV D LEQVKQHL VASTGT PRLVVLDDVWEREVVD +PLG K+L+TTRDRSVV VP LE+GDMTE++ALELL K+S VGQPGDDV T+MTKVV LCG LPLVLAIAGS +VVKG+
Sbjct: 70 VGPLVPVCEAFKALIEAAEGA-----------AESQHKLQSLVSQCAFLATVLIQHGRAVGPLAQVHKPIEDFVVTTNDLAGFAARWANGGKCRAFFCHRPDLSALADFEECLRRIRSDIALVDGLEHHQSFLAALPSLLPPSLPDMAAVPAGALELPCSSYVERAAVQEVADGLTSPEDPRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAARTDAPHTVPHVLDGLEQVKQHLAAVASTGTFPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVVVPAGRLEVGDMTEEEALELLRKSSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVKGK 432
BLAST of mRNA_A-nodosum_M_contig8894.1.2 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI) HSP 1 Score: 342 bits (877), Expect = 8.810e-94 Identity = 186/267 (69.66%), Postives = 210/267 (78.65%), Query Frame = 1
Query: 499 RHKELEKELQEIDDDIRRVLQAISTKGTIGPLLPPPLPDMAEVPDGALPEPRS-YVERPCVQKAVDDLIKPEDPRAPYTIVGMGGGGKTVLASAVVRKQSVREHFRGGIFWIKVGRRVKNKLLSLLKPLAREMGAAPTDAPHGVPHVFDSLEQVKQHLTTVASTGTSPRLVVLDDVWEREVVDTLLPLGLKLLVTTRDRSVVGVPGECLELGDMTEDKALELLLKTSMTVGQPGDDVLTQMTKVVTLCGRLPLVLAIAGSNTVVKGR 1296
R K+LEK+LQEI D+ RV+ AI+ K +LPP LPDMAEVP GAL P S YVER VQ+ D L PE+PR PYT+VG+GGGGK+VLASAVVR SVREHFRGGI W++VGR KN LL LL+ LARE+GAAPTDAPHGVPH DSLEQV+QHL VAST SPRLVVLDDVWEREVVD +PLG KLL+TTRDRS+V P LELGDMTE++ALELL KTS TV PGDDV +MTKVV LCG LPLVLAIAGS + VKG+
Sbjct: 5 RPKKLEKKLQEIGGDVCRVVDAIAAKRIFTDILPPSLPDMAEVPVGALELPHSSYVERAAVQEVADGLTNPEEPRTPYTVVGIGGGGKSVLASAVVRMPSVREHFRGGISWVRVGRGAKNSLLPLLQGLAREVGAAPTDAPHGVPHALDSLEQVQQHLAAVASTRNSPRLVVLDDVWEREVVDAFVPLGFKLLLTTRDRSIVCDPAGRLELGDMTEEEALELLRKTSGTV-DPGDDVRMKMTKVVALCGHLPLVLAIAGSMSAVKGK 270
BLAST of mRNA_A-nodosum_M_contig8894.1.2 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 338 bits (866), Expect = 7.490e-93 Identity = 176/236 (74.58%), Postives = 198/236 (83.90%), Query Frame = 1
Query: 592 LLPPPLPDMAEVPDGALPEPRS-YVERPCVQKAVDDLIKPEDPRAPYTIVGMGGGGKTVLASAVVRKQSVREHFRGGIFWIKVGRRVKNKLLSLLKPLAREMGAAPTDAPHGVPHVFDSLEQVKQHLTTVASTGTSPRLVVLDDVWEREVVDTLLPLGLKLLVTTRDRSVVGVPGECLELGDMTEDKALELLLKTSMTVGQPGDDVLTQMTKVVTLCGRLPLVLAIAGSNTVVKGR 1296
LLPP LPDMA VP GAL P S YVER VQ+ D L PE+ RAPYT+VGMGGGGK+VLASA VRK SVREHFRGGIFW++VGR K+ LL+LL+ LA ++GAAPTDAPHGVPHV D LEQV+QHL VASTGTSPRLVVLDDVWEREVVD +PLG K+L+TTRDRSVVG+P LELGDMTE++ALELL KTS TVGQPGDDV T+MTKVV LCG LPLVLAIAGS +VV+G+
Sbjct: 251 LLPPSLPDMAAVPTGALELPSSSYVERAAVQEVADGLTTPEESRAPYTVVGMGGGGKSVLASAAVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAWDVGAAPTDAPHGVPHVLDRLEQVQQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGLPAGRLELGDMTEEEALELLRKTSGTVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGK 486
BLAST of mRNA_A-nodosum_M_contig8894.1.2 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI) HSP 1 Score: 332 bits (850), Expect = 1.540e-91 Identity = 176/235 (74.89%), Postives = 191/235 (81.28%), Query Frame = 1
Query: 592 LLPPPLPDMAEVPDGALPEPRSYVERPCVQKAVDDLIKPEDPRAPYTIVGMGGGGKTVLASAVVRKQSVREHFRGGIFWIKVGRRVKNKLLSLLKPLAREMGAAPTDAPHGVPHVFDSLEQVKQHLTTVASTGTSPRLVVLDDVWEREVVDTLLPLGLKLLVTTRDRSVVGVPGECLELGDMTEDKALELLLKTSMTVGQPGDDVLTQMTKVVTLCGRLPLVLAIAGSNTVVKGR 1296
+LPP LP A VP GAL PRSYVERP VQ+A+ DL+ PE APY IVGMGGGGKTVLASA+VRK SV EHFRGGIFW+++GR LL L+ LAREMGAAPTDAPHGVPHVFDSLEQV QHL V S G+SPRLVVLDDVWEREVV L +GLK+LVTTRDRS+VGVPG LELGDM ED+ALELL KTS TVGQPGD V TQMTKVV CGRLPLVLAIAGS VVKG+
Sbjct: 229 VLPPTLPQRAAVPTGALALPRSYVERPGVQEAMGDLMDPEKALAPYMIVGMGGGGKTVLASALVRKSSVLEHFRGGIFWMEMGRGANKSLLHRLQGLAREMGAAPTDAPHGVPHVFDSLEQVMQHLAAVVSRGSSPRLVVLDDVWEREVVAAFLGVGLKVLVTTRDRSIVGVPGGLLELGDMAEDEALELLWKTSGTVGQPGDGVRTQMTKVVDRCGRLPLVLAIAGSMPVVKGK 463
BLAST of mRNA_A-nodosum_M_contig8894.1.2 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 330 bits (846), Expect = 1.910e-89 Identity = 174/236 (73.73%), Postives = 196/236 (83.05%), Query Frame = 1
Query: 592 LLPPPLPDMAEVPDGALPEPRS-YVERPCVQKAVDDLIKPEDPRAPYTIVGMGGGGKTVLASAVVRKQSVREHFRGGIFWIKVGRRVKNKLLSLLKPLAREMGAAPTDAPHGVPHVFDSLEQVKQHLTTVASTGTSPRLVVLDDVWEREVVDTLLPLGLKLLVTTRDRSVVGVPGECLELGDMTEDKALELLLKTSMTVGQPGDDVLTQMTKVVTLCGRLPLVLAIAGSNTVVKGR 1296
LLPP LPDMA VP GAL P S YVER VQ+ D L PE+ RAPYT+VGMGGGGK+VLASAVVRK SVREHFRGGIFW++VGR K+ LL+LL+ LAR++GAAPTDAP GVP V DSLEQV+QHL V STGTS RLVVLDDVWEREVVD +PLG K+L+TTRDRSVVGVP LELGD+TE++ALELL KTS VGQPGDDV T+MTKVV LCG LPLVLAIAGS +VV+G+
Sbjct: 234 LLPPSLPDMAAVPAGALELPSSSYVERAAVQEVADGLTAPEESRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLARDVGAAPTDAPCGVPRVLDSLEQVRQHLAAVTSTGTSQRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLELGDVTEEEALELLRKTSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGK 469
BLAST of mRNA_A-nodosum_M_contig8894.1.2 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI) HSP 1 Score: 323 bits (829), Expect = 5.640e-87 Identity = 173/236 (73.31%), Postives = 191/236 (80.93%), Query Frame = 1
Query: 592 LLPPPLPDMAEVPDGALPEPRSYVERPCVQKAVDDLIKPEDPRAPYTIVGMGGGGKTVLASAVVRKQSVREHFRGGIFWIKVGRRVKNKLLSLLKPLAREMGAAPTDAPHGVPHVFDSLEQVKQHLTTV-ASTGTSPRLVVLDDVWEREVVDTLLPLGLKLLVTTRDRSVVGVPGECLELGDMTEDKALELLLKTSMTVGQPGDDVLTQMTKVVTLCGRLPLVLAIAGSNTVVKGR 1296
L PP L DMA VP GAL PR YVER VQ+ D L PE+PRAPYT+VG+GGGGK+VLASAVVRK SVREHFRGGI W++VGR KN LL LL+ LAREMG APTDAPH VP V DSLEQV+QHL V ASTGTSPRLVVLDDVWEREVVD L+PLG K+L+TTRD SVV VP L+LGDMTE++ALELL KTS TVGQPGD V +MTKVV LCG LPLVLAIAGS + VKG+
Sbjct: 209 LRPPRLLDMAAVPAGALDLPRGYVERAAVQEVADGLTAPEEPRAPYTVVGLGGGGKSVLASAVVRKPSVREHFRGGISWVRVGRGAKNSLLPLLQGLAREMGVAPTDAPHAVPQVLDSLEQVQQHLAAVVASTGTSPRLVVLDDVWEREVVDALVPLGFKVLLTTRDWSVVVVPARRLDLGDMTEEEALELLRKTSGTVGQPGDYVRMKMTKVVALCGHLPLVLAIAGSMSAVKGK 444
BLAST of mRNA_A-nodosum_M_contig8894.1.2 vs. uniprot
Match: A0A6H5KQU6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQU6_9PHAE) HSP 1 Score: 247 bits (630), Expect = 2.220e-65 Identity = 160/320 (50.00%), Postives = 195/320 (60.94%), Query Frame = 1
Query: 313 DGESVLQQLHRDPRHV-ARIGIERDLADLNDLADRIKNLVQNHTAAPGASRRMRMRKAITRSFRHKELEKELQEIDDDIRRVLQAISTKGTIGPLLPPPLPDMAEVPDGALPEPRSYVERPCVQKAVDDLIKPEDPRAPYTIVGMGGGGKTVLASAVVRKQSVREHFRGGIFWIKVGRRVKNKLLSLLKPLAREMGAAPTDAPHGVPHVFDSLEQVKQHLTTVASTGTSPRLVVLDDVWEREVVDTLLPLGLKLLVTTRDRSVVGVPGECLELGDMTEDKALELLLKTS--------------MTVGQPGDDVLTQMTKV 1227
D SVL+ L + PR + A IE +L L +L R L+ + G + TR+ ++ +E +L+EID ++ R ++S + A VP GA P YV R V+KAV+ LI E+P AP+ +VGM G GKTVL SAVVR VREHF GGIFW++VGR K LL L++ LAREMGA HGVP+V D LEQV QH+ VASTGTSPRLVVLDDVWEREVVD LL L LK+LVTTRD SVVGVPG LE DM ED+A+ELLLKTS MTVG+P + L QMTKV
Sbjct: 13 DFSSVLEALPKKPRVILAADEIEHELRRLAELFARATYLIGEYALMTGDG------ETTTRAANYEHVESKLEEIDREVAR--SSLSNR--------------AAVPAGAHGLPHYYVARSVVRKAVEGLINAEEPSAPFVVVGMSGAGKTVLVSAVVRHLRVREHFHGGIFWMRVGRGAKTSLLPLMQTLAREMGA------HGVPYVLDGLEQVGQHVAAVASTGTSPRLVVLDDVWEREVVDALLRLKLKVLVTTRDHSVVGVPGTRLEPEDMAEDEAMELLLKTSVPKNKALEKLIKAAMTVGRPAN-FLAQMTKV 303
BLAST of mRNA_A-nodosum_M_contig8894.1.2 vs. uniprot
Match: A0A6H5JLW6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW6_9PHAE) HSP 1 Score: 211 bits (537), Expect = 1.840e-54 Identity = 117/178 (65.73%), Postives = 132/178 (74.16%), Query Frame = 1
Query: 742 MGGGGKTVLASAVVRKQSVREHFRGGIFWIKVGRRVKNKLLSLLKPLAREMGAAPTDAPHGVPHVFDSLEQVKQHLTTVASTGTSPRLVVLDDVWEREVVDTLLPLGLKLLVTTRDRSVVGVPGECLELGDMTEDKALELLLKTSMTVGQPGDDVLTQMTKVVTLCGRLPLVLAIAGS 1275
MGGGG+TVL SAVVR+ SV E+FRGGIF + VGR KN+LL LL+ LAREMGAAP APHG P DSLE V QHLTTV STGTSPRLVVLDDV EREVV+ LLPLGLKL+VTTRDRSVVGVPG CLE+GDMTE++ALELL+ S V D LPL +A+ G+
Sbjct: 1 MGGGGETVLVSAVVRELSVLEYFRGGIFLMSVGRGAKNRLLPLLQGLAREMGAAPAHAPHGNPGDLDSLEHVMQHLTTVVSTGTSPRLVVLDDVLEREVVEALLPLGLKLVVTTRDRSVVGVPGGCLEVGDMTEEEALELLMLASGAVSSRIAD--------------LPLAMAVIGA 164 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8894.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig8894.1.2 >prot_A-nodosum_M_contig8894.1.2 ID=prot_A-nodosum_M_contig8894.1.2|Name=mRNA_A-nodosum_M_contig8894.1.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=165bp MGHGGYRVHDLILEFVKIKMKADAEMLKKATALQAQYLGRLDVSKSYGDPback to top mRNA from alignment at A-nodosum_M_contig8894:3514..12202+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig8894.1.2 ID=mRNA_A-nodosum_M_contig8894.1.2|Name=mRNA_A-nodosum_M_contig8894.1.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=8689bp|location=Sequence derived from alignment at A-nodosum_M_contig8894:3514..12202+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig8894:3514..12202+ >mRNA_A-nodosum_M_contig8894.1.2 ID=mRNA_A-nodosum_M_contig8894.1.2|Name=mRNA_A-nodosum_M_contig8894.1.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=495bp|location=Sequence derived from alignment at A-nodosum_M_contig8894:3514..12202+ (Ascophyllum nodosum dioecious)back to top |