mRNA_A-nodosum_M_contig888.7.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig888.7.2
Unique NamemRNA_A-nodosum_M_contig888.7.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig888.7.2 vs. uniprot
Match: D7FT16_ECTSI (N_BRCA1_IG domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT16_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 6.780e-97
Identity = 187/305 (61.31%), Postives = 204/305 (66.89%), Query Frame = 1 
Query: 2827 KPQGKPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGAVIFPPGCKLMPVGGDLMSGPEDGVPVESRAPGEEFHVSVTLTTPIQSGRYIGYWRLRTAEGQNFGHRIWADVLVTGGTADLMAEGSVDGDWDLVNMQRLSKAVEDTAKDAQIAAADAKAVANSATDAAADPPAQAAPTPPVNVGPDASFE--APAQA---VSKNPFDPFLGDCSGVDETKT--------------SDEAVEKQPEPKATSPAV--------SKWHRELCSLAEMGFENTARNITLLEKHVTAPGNPGMERVLHELL 3660
            K   KPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDG V FP GCK++PVGGDLM+GPEDGV VE R PGEEFHVSV LTTP  SGRYIGYWRLRTAEGQ FGHR+WADVLVTGGTADL+ EG+VDGDWDLVNMQRLSKAVEDT KD   AAA                 A   PT P N+         AP QA    S    D   G   G +E+K+              +D   E+Q  P   +P+         +KWHRELCSLAEMGFENT RN+ LLEKHV   G+PGMERVLHELL
Sbjct:  289 KSSAKPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGPVTFPSGCKIVPVGGDLMAGPEDGVAVEQRGPGEEFHVSVPLTTPPLSGRYIGYWRLRTAEGQKFGHRVWADVLVTGGTADLVDEGTVDGDWDLVNMQRLSKAVEDTGKDDAAAAA-----------------AAVEPTAPENIPSTVQTPSYAPGQAWDPASAKAQDADSGADRGFEESKSXXXXXXXXXXXXSVADPLPEQQAAPVVVAPSAPSVPPTMATKWHRELCSLAEMGFENTQRNVQLLEKHVVNSGSPGMERVLHELL 576
[Close]
BLAST of mRNA_A-nodosum_M_contig888.7.2 vs. uniprot
Match: A0A6H5JI15_9PHAE (ZZ-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI15_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 2.870e-51
Identity = 265/726 (36.50%), Postives = 316/726 (43.53%), Query Frame = 1 
Query: 1009 DGDMVRFDSEEEFVAAMTGFMSWRSCLRVEVTVLKSVPSSAAVSADTSAETAQPAASTVVGNQGEAETEKVAVSEATPSEMTEPTPSESGSMMSFVSDVTRSTIS--------------------------GATAKIPAGPVAPRPEPXXXXXXXTAGDVPA------------------------TISVEPEVXXXXXXXXXXXXXXAAQFAASGDTSATTPTAQAKAFLTQVLPSLADVLARSMYAAQM----MPNAMAPPTSQSSRNAEDIFGSTAAGLAAAXXXXXXXXXXXXXXXXXXAENVQAPVDHAPANTSG------------AVPAAP--AQPPVVPAGNAPAATPVSASATPHEANSP-VVHTGIVCDVCEVCPIVGTRYKCAVRSDFDLCEACE-AVTGADSPFPFLKIRTPAQVPSAIVCLLRPDQPASIEEASTGKNHR-----------GNNASGSRSYAPGQPWRARRSPQRGGWGEGRRNCQRWMKDMARRXXXXXXXXXXXXXXXXPGVEVVR-------CAPPPWCGPRMQRRKQDDTAPPTAVGQKSAEEPVKKS----EAERDGVEPPTPPASVASSEHGSTIVATAVSDPANAGVAQAEVAPEEVVEADT------VEKPANDPFSFSAATEAEAEASQPP---NYHDLLATSMRSLASSMSSSHPIAAAPQEKSRGHAGSGEASKPQG---------KPMARF 2856
            DGDMVRFDSEEEFVAAM+ + SW  CLRVEVT LK  PS    +AD    +   AA+    +      E  A++ + P+ M     SE+ S+MSFVS+++ S                             G+    P       P P       TA  V A                                XXXXXXXXXXXXX  +    +       P   A+AFLTQVLP LADVLARS+YAA      +PN      S+   +               XXXXXXXXXXXXXXXXXX                             + P  P   QPP  P       TP              VVH G+ CD C+VCPI+GTRYKCAVR+DFDLCE CE A  G  SPFPFLKIRTP Q P+AIVCLL+ DQP + +EA+                 G+N  G R++APGQ WR R +PQ GGWGEGRR   RWM+D+ARR                PGVEVVR       C   PWCGPRMQRR+ DD A            P K +     A    + P  PP   A             SD  NA VA                    VE+PA                   P    YHD+LA SMRSLASSM++S P   +      G A +G+ S+  G         KPMAR+
Sbjct:   80 DGDMVRFDSEEEFVAAMS-YKSWEGCLRVEVTALK--PSPRPPAADPEPASVADAAAXXXSD------ELAAIASSDPTPM-----SETASVMSFVSNMSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSEDAPPVARSLAAPVPALAPPVDTAAAVEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSSLPPAAPAGFGGPGTPARAFLTQVLPGLADVLARSIYAANRGSDGVPNTSPASASEGGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTPEVPRTVQPPSAP-------TPXXXXXXXXXXXXXXVVHHGVKCDACDVCPIIGTRYKCAVRADFDLCEECERAPVGQGSPFPFLKIRTPTQAPAAIVCLLKHDQPGTAQEAAAXXXXXXXXXXXXXDTPGSNNGGRRTFAPGQGWRCRSNPQHGGWGEGRRKGHRWMRDLARRQQQQFERAASGMGPVPPGVEVVRGNGGGVGCNRQPWCGPRMQRRRDDDPATXXXXXXXXGVAPKKDALAALAASLTQLFPTPPPVGFAEK-----------SDADNAAVAAXXXXXXXXXXXXXXXXXXXVEEPAETAXXXXXXXXXXXXXXXXPPSGEYHDMLAASMRSLASSMTASFPSPGSGSSAQEGGATAGKPSRNSGDTGGNKSSAKPMARY 773
[Close]
BLAST of mRNA_A-nodosum_M_contig888.7.2 vs. uniprot
Match: A0A7S4D636_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D636_HETAK)

HSP 1 Score: 156 bits (395), Expect = 2.740e-35
Identity = 150/433 (34.64%), Postives = 201/433 (46.42%), Query Frame = 1 
Query: 1912 VVHTGIVCDVCEVCPIVGTRYKCAVRSDFDLCEACEAVTGADSPFPFLKIRTPAQVPSAIVCLLRPDQPASIEEASTGKNHRGNNASGSRSYAPGQPWRARRSPQRGGWGEGRRNCQRWMKDMARRXXXXXXXXXXXXXXXXPGVEVVRCAPPPWCGPRMQRRKQDDTAPPTAVGQKSAEE----PVKKSEAERDGVEPPTPPASVASSEHGSTIVATAVSDPANAGVAQAEVAPEEVVEADTVEKPANDPFSFSA------ATEAEAEASQPPNYHDLLATSMRSLASSMSSSHPIAAAPQEKSRGHAGSGEASKPQGKPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGAVIFPPGCKLMPVGGDLMSGPEDGVPVESRAPGEEFHVSVTLTTPIQSGRYIGYWRLRTAEGQNFGHRIWADVLVTGGTA 3180
            +VH  + CD C   PIVG RYKCAVR DFDLC  CEA   AD  +P+LKIR P+Q P+A++ +L+ ++    +EA    + +   A         +    R +  +  WG+ R   +RW++D  RR  XXXXXXXXXXX    G    R A         Q                        PV                  VA  + G      + S+     V Q E+A  + ++A   E  +              A    A   QPP Y +    + ++L        P+AAA   K             + KPMARFV DV++ DG+ + P   F KTW MRNDGAV FP G +L+ VGGDLM G     PV +  PGEEF + + L  P++ GRYIGYWRL+  EG +FGHR+W DV V  G +
Sbjct:  200 IVHPHVTCDACGRNPIVGVRYKCAVRDDFDLCAPCEA-KDADCKYPYLKIRRPSQAPAALITVLKSEE----DEAMADDDAQAEAA---------RLLEERLASGQATWGDLRHGGRRWLRD--RRCGXXXXXXXXXXXNWRQGGWRARQAEKARVAAEQQXXXXXXXXXXXXXXXXXXXXXXXVPVAAPXXXXXXXXXXXXXXPVAEPQSGKPEEDLSASEV----VHQEEIA--QAIKASLAEGESAGAIXXXXXXXXXXAEGGAAAPPQPPAYQE----ATQNLPPRR---QPVAAAAPGK-------------KDKPMARFVADVTIPDGTEVAPGASFTKTWKMRNDGAVAFPAGARLVNVGGDLMEGAPR--PVGAHGPGEEFALGLELQAPLRPGRYIGYWRLQAPEGHHFGHRLWVDVRVAEGAS 588
[Close]
BLAST of mRNA_A-nodosum_M_contig888.7.2 vs. uniprot
Match: A0A6H5JHM7_9PHAE (N_BRCA1_IG domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM7_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 8.620e-32
Identity = 62/82 (75.61%), Postives = 68/82 (82.93%), Query Frame = 1 
Query: 2854 FVTDVSVADGSPLPPNTRFVKTWCMRNDGAVIFPPGCKLMPVGGDLMSGPEDGVPVESRAPGEEFHVS--VTLTTPIQSGRY 3093
            FVTDVSVADGSPLPPNTRFVKTWCMRNDG V FP GCK++PVGGDLM+GPEDGV +E R PGEEFHVS   + T PI   R+
Sbjct:   44 FVTDVSVADGSPLPPNTRFVKTWCMRNDGPVTFPAGCKIVPVGGDLMAGPEDGVAIEQRGPGEEFHVSNVTSATGPITGRRW 125
[Close]
BLAST of mRNA_A-nodosum_M_contig888.7.2 vs. uniprot
Match: A0A7S3XSC8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSC8_HETAK)

HSP 1 Score: 135 bits (340), Expect = 1.190e-30
Identity = 63/114 (55.26%), Postives = 78/114 (68.42%), Query Frame = 1 
Query: 2839 KPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGAVIFPPGCKLMPVGGDLMSGPEDGVPVESRAPGEEFHVSVTLTTPIQSGRYIGYWRLRTAEGQNFGHRIWADVLVTGGTA 3180
            KPMARFV DV++ DG+ + P   F KTW MRNDGAV FP G +L+ VGGDLM G     PV +  PGEEF + + L  P++ GRYIGYWRL+  EG +FGHR+W DV V  G +
Sbjct:   87 KPMARFVADVTIPDGTEVAPGASFTKTWKMRNDGAVAFPAGARLVNVGGDLMEGAPR--PVGAHGPGEEFALGLELQAPLRPGRYIGYWRLQAPEGHHFGHRLWVDVRVAEGAS 198
[Close]
BLAST of mRNA_A-nodosum_M_contig888.7.2 vs. uniprot
Match: A0A6S9FPI1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FPI1_HETAK)

HSP 1 Score: 135 bits (340), Expect = 2.640e-29
Identity = 63/114 (55.26%), Postives = 78/114 (68.42%), Query Frame = 1 
Query: 2839 KPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGAVIFPPGCKLMPVGGDLMSGPEDGVPVESRAPGEEFHVSVTLTTPIQSGRYIGYWRLRTAEGQNFGHRIWADVLVTGGTA 3180
            KPMARFV DV++ DG+ + P   F KTW MRNDGAV FP G +L+ VGGDLM G     PV +  PGEEF + + L  P++ GRYIGYWRL+  EG +FGHR+W DV V  G +
Sbjct:  268 KPMARFVADVTIPDGTEVAPGASFTKTWKMRNDGAVAFPAGARLVNVGGDLMEGAPR--PVGAHGPGEEFALGLELQAPLRPGRYIGYWRLQAPEGHHFGHRLWVDVRVAEGAS 379
[Close]
BLAST of mRNA_A-nodosum_M_contig888.7.2 vs. uniprot
Match: A0A7S3TLQ9_9SPIT (Hypothetical protein n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7S3TLQ9_9SPIT)

HSP 1 Score: 119 bits (298), Expect = 1.790e-23
Identity = 94/293 (32.08%), Postives = 142/293 (48.46%), Query Frame = 1 
Query: 2797 RGHAGSGEASKPQGKPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGAVIFPPGCKLMPVGGDLMSGPEDGVPVESRAP---GEEFHVSVTLTTPIQSGRYIGYWRLRTAEGQN-FGHRIWADVLVTGGTADLMAEGSVDGDWDLVNMQRLSKAVEDTAKDAQIAAADAKAVANSATDAAADPPAQAAPTPPVNVGPDASFEAPAQAVSKNPFDPFLGDCSGVDETKTSDEAVEKQPEPKATS--PAVSKWHRELCSLAEMGFENTARNITLLEKHVTAPGNPGMERVLHEL 3657
            RG     +  KP  KP ARF++DVS+ +G+ + P T+F K W +RN G V + PG KL+ VGGD +S  +  VP+ S AP   GEE  V+V +  P + GRY+GYWRL    G+  FG R+W  + V    AD      +  D +L  +    K   +            KA A+   D   D       TPP   G  +   A   AV        +   + V+  + S +  +  P  +ATS  P      + L  LA+MGFE+   N ++++KH+T+ G+  +++ + EL
Sbjct:  409 RGEEAPSKLEKPN-KPCARFISDVSIHEGTQMMPKTKFTKIWKIRNSGDVPWWPGSKLVFVGGDQLSA-DSSVPLPSAAPVQPGEEVDVAVDMEAPQEPGRYVGYWRLTGPMGRRKFGQRVWVHMQVV---ADPNEPTRIPSDEELCKLNDEMKLQRE------------KAEADDEADEGEDN------TPPARTGAPSMDTADNAAVPSTSGPKPIPRKTPVETEEPSAQDADPCPSAEATSTPPVEVVKTKALDDLAQMGFEDEQLNASVIDKHMTSDGSLDLDKCVAEL 678
[Close]
BLAST of mRNA_A-nodosum_M_contig888.7.2 vs. uniprot
Match: A0A485LEZ8_9STRA (Aste57867_20135 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LEZ8_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.050e-21
Identity = 59/129 (45.74%), Postives = 75/129 (58.14%), Query Frame = 1 
Query: 2785 QEKSRGHAGSGEASKPQGKPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGAVIFPPGCKLMPVGGDLMSGPEDGVPVESRAPGEEFHVSVTLTTPIQSGRYIGYWRLRTAEGQNFGHRIWADVLVTG 3171
            QEK     G  +A     KP A FV DVS  DGS +     FVKTW ++NDG   +P   +L+ VGGD +   ED V V    PG+   VSV +  PI+  RY GYWRL TA+G+ +GHR+W D+LV G
Sbjct:  328 QEKEINSHGIMDADDVDSKPSASFVGDVSFPDGSTIRAGDTFVKTWRLKNDGKTRWPAKSRLVCVGGDHLEVGEDSVSVPILLPGKMIDVSVDMQAPIKPARYTGYWRLCTADGKRYGHRLWVDILVVG 456
[Close]
BLAST of mRNA_A-nodosum_M_contig888.7.2 vs. uniprot
Match: A0A6H5JIQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ9_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.560e-21
Identity = 77/169 (45.56%), Postives = 87/169 (51.48%), Query Frame = 1 
Query: 3229 MQRLSKAVEDTAKDAQIAAADAKAVANSATDAAADPPAQAAPTPPVNVGP--DASFEAPAQA---VSKNPFDPFLGDCSGVDETKTSDEAV------------EKQPEPKATSPAV--------SKWHRELCSLAEMGFENTARNITLLEKHVTAPGNPGMERVLHELL 3660
            MQRLSKAVEDT KD   AAA A                   PT P N+    +    AP QA    S    D   G   G +ETK+SDEA             E+Q  P   +P+         +KWHRELCSLAEMGFENT RN+ LLEKHV   G+PGMERVLHELL
Sbjct:    1 MQRLSKAVEDTGKDDTPAAATA-----------------VEPTAPDNIPTTVETPSYAPGQAWDPESAKTRDTDTGADRGFEETKSSDEATAGGDGVGYVAAPEQQAAPVVVAPSAPSVPPTMATKWHRELCSLAEMGFENTQRNVQLLEKHVVNSGSPGMERVLHELL 152
[Close]
BLAST of mRNA_A-nodosum_M_contig888.7.2 vs. uniprot
Match: A0A6G0WW99_9STRA (UBA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WW99_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.170e-20
Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = 1 
Query: 2839 KPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGAVIFPPGCKLMPVGGDLMSGPEDGVPVESRAPGEEFHVSVTLTTPIQSGRYIGYWRLRTAEGQNFGHRIWADVLVTG 3171
            KP A FV DVS  DGS +     FVKTW ++NDG   +P   +L+ VGGD +   ED V V    PG+   VSV +  P ++ RY GYWRL TA+G+ +GHR+W D+LV G
Sbjct:  345 KPSAGFVGDVSFPDGSTIRAGDTFVKTWRLKNDGKTRWPAKSRLVCVGGDHLEVGEDFVSVPIVPPGKMIDVSVEMRAPNKAARYTGYWRLCTADGKRYGHRLWVDILVVG 455
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig888.7.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT16_ECTSI6.780e-9761.31N_BRCA1_IG domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JI15_9PHAE2.870e-5136.50ZZ-type domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S4D636_HETAK2.740e-3534.64Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6H5JHM7_9PHAE8.620e-3275.61N_BRCA1_IG domain-containing protein n=1 Tax=Ectoc... [more]
A0A7S3XSC8_HETAK1.190e-3055.26Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6S9FPI1_HETAK2.640e-2955.26Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3TLQ9_9SPIT1.790e-2332.08Hypothetical protein n=3 Tax=Eukaryota TaxID=2759 ... [more]
A0A485LEZ8_9STRA1.050e-2145.74Aste57867_20135 protein n=1 Tax=Aphanomyces stella... [more]
A0A6H5JIQ9_9PHAE5.560e-2145.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G0WW99_9STRA3.170e-2047.75UBA domain-containing protein n=1 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig888contigA-nodosum_M_contig888:45799..51346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT16
PFAMsN_BRCA1_IG,PB1,ZZ
Model size4912
Max annot lvl2759|Eukaryota
KEGG koko:K17987
KEGG Pathwayko04137,map04137
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.38e-101
EggNOG OGsKOG4351@1|root,KOG4351@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_004470.1
Descriptionubiquitin binding
Cds size2655
COG categoryS
BRITEko00000,ko00001,ko03029,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig888.7.2prot_A-nodosum_M_contig888.7.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig888 47039..50329 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870305.0068665-UTR-A-nodosum_M_contig888:45798..470381680870305.0068665-UTR-A-nodosum_M_contig888:45798..47038Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig888 45799..47038 -
1680870305.069969-UTR-A-nodosum_M_contig888:50329..513461680870305.069969-UTR-A-nodosum_M_contig888:50329..51346Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig888 50330..51346 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870305.0224686-CDS-A-nodosum_M_contig888:47038..470691680870305.0224686-CDS-A-nodosum_M_contig888:47038..47069Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig888 47039..47069 -
1680870305.032663-CDS-A-nodosum_M_contig888:47270..477071680870305.032663-CDS-A-nodosum_M_contig888:47270..47707Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig888 47271..47707 -
1680870305.0447707-CDS-A-nodosum_M_contig888:47949..481021680870305.0447707-CDS-A-nodosum_M_contig888:47949..48102Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig888 47950..48102 -
1680870305.0576155-CDS-A-nodosum_M_contig888:48295..503291680870305.0576155-CDS-A-nodosum_M_contig888:48295..50329Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig888 48296..50329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig888.7.2

>prot_A-nodosum_M_contig888.7.2 ID=prot_A-nodosum_M_contig888.7.2|Name=mRNA_A-nodosum_M_contig888.7.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=885bp
MVRFDSEEEFVAAMTGFMSWRSCLRVEVTVLKSVPSSAAVSADTSAETAQ
PAASTVVGNQGEAETEKVAVSEATPSEMTEPTPSESGSMMSFVSDVTRST
ISGATAKIPAGPVAPRPEPAPAAATSTAGDVPATISVEPEVPPPAAPSPA
GSSASAAQFAASGDTSATTPTAQAKAFLTQVLPSLADVLARSMYAAQMMP
NAMAPPTSQSSRNAEDIFGSTAAGLAAAAATAAATAASMASSVSSVAENV
QAPVDHAPANTSGAVPAAPAQPPVVPAGNAPAATPVSASATPHEANSPVV
HTGIVCDVCEVCPIVGTRYKCAVRSDFDLCEACEAVTGADSPFPFLKIRT
PAQVPSAIVCLLRPDQPASIEEASTGKNHRGNNASGSRSYAPGQPWRARR
SPQRGGWGEGRRNCQRWMKDMARRQQQQELLAGGRGSVVPPGVEVVRCAP
PPWCGPRMQRRKQDDTAPPTAVGQKSAEEPVKKSEAERDGVEPPTPPASV
ASSEHGSTIVATAVSDPANAGVAQAEVAPEEVVEADTVEKPANDPFSFSA
ATEAEAEASQPPNYHDLLATSMRSLASSMSSSHPIAAAPQEKSRGHAGSG
EASKPQGKPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGAVIFPPGCK
LMPVGGDLMSGPEDGVPVESRAPGEEFHVSVTLTTPIQSGRYIGYWRLRT
AEGQNFGHRIWADVLVTGGTADLMAEGSVDGDWDLVNMQRLSKAVEDTAK
DAQIAAADAKAVANSATDAAADPPAQAAPTPPVNVGPDASFEAPAQAVSK
NPFDPFLGDCSGVDETKTSDEAVEKQPEPKATSPAVSKWHRELCSLAEMG
FENTARNITLLEKHVTAPGNPGMERVLHELLRGT*
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mRNA from alignment at A-nodosum_M_contig888:45799..51346-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig888.7.2 ID=mRNA_A-nodosum_M_contig888.7.2|Name=mRNA_A-nodosum_M_contig888.7.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5548bp|location=Sequence derived from alignment at A-nodosum_M_contig888:45799..51346- (Ascophyllum nodosum dioecious)
TCGCGATTTGGATCCCTGTTGGTCTGAGTAGCGGGTTGTCACCATAATGT
GACCCGTTGACCTTCGTACCTCTTTGTGACCACAAGCGGGATTGGCGTTT
GATAGGTCTATGGCTGACTTGTTGTGTCACCGTAGTTTCTTCAGTTGCAA
GGACAATACGCTGAATGTGTGAATCAACAACAACAACTGTCTAGGACAAA
GGGTACTAGATTGCGTGATGTGCGCAGTTGATTTTGTTTTGCCCTTCTCA
ACAGCTCCGGGGTGGGGGTTGGCCTGGTAGGTGGGAACCCGACGATGAAC
ACTCCCCAAGGGGGGAGATGATAGCTTCCCCTTATTTTTACTTATAGTGG
TACTCCTATATACAGTAGTATATTTTGGTTGTGATTCAGCTTCCGAGATG
GATCAATGGGCTCTATTTACGTTGAGGTTTTCCTGCTCCAACCTGCTTTC
CGTTTTTCTAAATTTGTTAATTTTAGGAACTTCGTAAATATTTTTTCGCG
AGTGTAGGAATTTTCTCTAGGTCTTCATTATTTTTATTTTATTCTGTGCC
TTGTTTTGGGTCATATGGCTTGTGACTACAGAACTTCGTTACTATGCCCC
GAAAAGTAAGAAAGAAAAGGTGGACAACCAACAGCACACAGATACATACA
ACCGGAATTCCGGAAATGAGATTTCCTGCTTTTACTAAACATGGGACAAT
TTGAACGGTACAATAGCTGTTTCTTTTCCAACCAAGTTAAAGACGGAGAG
TCTGACTCGGTTCACCAAGCTTGGCGTACGAAGATTTGCGTACATGACTG
CGTCAGCTTGCTTTCTTCAAGAGCGCCTTCTTGATCTGTAAATATTGGAT
AGTACTGTAGAAAGAGACAGTCTGTACAGGCAGGATGTCGTTGTCGATCG
ATACATTTTCGAAGATGACTCGAGAGAAGTGCACGTTCTTAAGTTAACCT
CTTCCTTAATCTTTTATCTGTTGACTATTACCCATTTTTTTCTCTTCCCT
TTCTCTAGGATGGAGACATGGTACGCTTCGACTCGGAGGAGGAGTTCGTG
GCTGCCATGACCGGATTCATGTCCTGGAGGAGCTGCCTGCGCGTCGAGGT
CACGGTCCTCAAGTCCGTCCCTTCCTCCGCAGCTGTTTCGGCCGATACCT
CCGCCGAAACTGCCCAACCCGCCGCCAGCACTGTAGTCGGTAATCAAGGA
GAGGCCGAAACGGAGAAGGTGGCGGTCTCGGAGGCCACGCCCTCTGAGAT
GACCGAGCCCACTCCGTCTGAAAGCGGCAGCATGATGTCCTTCGTGAGTG
ACGTGACTCGGTCGACCATTTCTGGAGCTACGGCCAAGATTCCCGCCGGG
CCTGTTGCACCTCGTCCGGAGCCTGCCCCTGCTGCCGCCACATCGACCGC
TGGTGATGTTCCCGCCACAATTTCTGTGGAGCCTGAGGTACCTCCTCCGG
CGGCCCCCTCGCCGGCAGGGTCGTCTGCGTCAGCAGCCCAATTCGCAGCC
TCCGGCGATACCTCGGCAACGACGCCGACCGCCCAGGCCAAGGCATTCCT
TACTCAAGTACTTCCAAGCCTGGCAGATGTGCTCGCCCGCTCCATGTACG
CGGCGCAGATGATGCCCAACGCGATGGCGCCTCCGACCTCACAGTCCTCG
CGCAATGCGGAGGATATCTTTGGTTCTACAGCCGCGGGACTCGCAGCGGC
GGCGGCCACTGCGGCGGCCACAGCCGCCAGCATGGCGTCGAGCGTCAGCT
CCGTCGCCGAGAATGTGCAGGCGCCGGTGGACCATGCCCCTGCTAACACC
AGTGGCGCTGTCCCGGCGGCTCCTGCCCAGCCACCTGTTGTGCCAGCTGG
CAACGCCCCCGCTGCTACACCTGTTTCGGCTTCGGCTACTCCCCATGAAG
CTAATAGCCCGGTGGTGCACACGGGCATCGTGTGCGATGTCTGCGAGGTG
TGCCCGATTGTGGGCACGCGGTACAAGTGCGCGGTGCGCAGCGATTTCGA
CCTGTGCGAGGCGTGCGAGGCCGTCACCGGCGCCGATTCGCCTTTCCCCT
TCCTGAAGATTAGAACGCCTGCCCAGGTTCCATCCGCGATCGTCTGCCTT
CTCAGGCCCGACCAACCCGCCAGCATCGAAGAGGCCTCGACCGGAAAGAA
TCACCGTGGCAACAATGCCTCGGGGTCGAGGTCCTACGCGCCCGGACAGC
CTTGGCGCGCCAGGAGGAGCCCTCAGCGCGGGGGCTGGGGTGAGGGCCGC
AGAAACTGCCAACGCTGGATGAAGGACATGGCCCGCCGCCAGCAGCAGCA
GGAGCTTCTCGCCGGCGGCAGGGGCTCAGTTGTCCCACCAGGTGTCGAGG
TCGTGCGGTGCGCGCCGCCGCCGTGGTGTGGCCCCAGGATGCAACGCCGC
AAGCAGGACGACACCGCCCCGCCGACCGCCGTTGGCCAGAAGTCTGCGGA
AGAGCCCGTCAAGAAGAGCGAGGCCGAAAGAGATGGTGTCGAGCCCCCCA
CTCCTCCCGCTAGCGTCGCCAGCAGCGAACATGGTTCTACAATCGTCGCT
ACCGCCGTCTCTGACCCCGCGAACGCTGGGGTCGCGCAAGCCGAGGTCGC
TCCCGAGGAGGTGGTGGAAGCCGACACGGTCGAGAAACCCGCTAACGACC
CTTTCAGCTTCTCCGCGGCCACGGAGGCGGAGGCGGAGGCATCTCAGCCT
CCCAACTACCACGACCTTCTGGCGACGTCCATGCGCTCGCTTGCTTCTTC
CATGTCCTCATCTCACCCGATCGCCGCGGCACCTCAGGAAAAGTCCCGTG
GACACGCGGGCTCGGGTGAAGCTAGCAAACCCCAGGGAAAGCCCATGGCC
CGTTTTGTGACAGACGTGTCCGTGGCGGACGGCAGCCCTTTGCCGCCCAA
CACCCGCTTTGTGAAGACATGGTGCATGCGCAATGACGGTGCGGTGATAT
TCCCCCCCGGGTGTAAGCTTATGCCCGTCGGAGGGGATCTCATGTCCGGT
CCGGAAGATGGAGTGCCCGTGGAATCACGCGCCCCTGGAGAGGAGTTCCA
TGTGAGTGATTTGCGGGCTTGCCGCTTTAGTTTGGTTCCCGAAATTGTTG
CAATAGCGGGGGTATCCATGTCCCTCTGATGGAAGGAAACTCGTGGCGAT
CATTTGAAATGTAGCTTGGTCTTGTGCGGCGTCACGCTGACTGTGTCTCC
TTGCCAACTGTTTGTTGTAATACACCCGCGGTATGCTCTGACAGGTGAGC
GTGACGCTTACGACGCCCATCCAAAGCGGCCGTTACATTGGCTACTGGCG
CCTGCGCACTGCTGAGGGCCAGAACTTTGGGCACCGTATCTGGGCCGATG
TTCTCGTGACAGGAGGCACTGCTGACCTTATGGCGGAGGGCAGCGTGGTA
AGTGCAGCACAGGTCTTTTGTTGTTCCACGGCCACTTTCCTCCCCGCTTT
GACTGCACTTTTACTTTTGACCGCCGTGATAATCGAAGCGGGTCTTTGAT
TTTTCGGAGACCATTCCCCCCTTTGGTTGCACTTCTACTCTTGACCGCCG
TGATAATCGAAATATTCCGTGCTCAACACATTTATAACTTTGTACTCGCA
TGTATTCTAAAGTCACATGTCTGGCACCGCCTTTTTCAGGATGGCGACTG
GGACCTAGTGAACATGCAGCGCCTGTCCAAGGCGGTGGAGGACACCGCGA
AGGACGCTCAGATTGCCGCAGCCGATGCCAAGGCCGTGGCCAATTCGGCT
ACCGATGCGGCCGCTGATCCTCCAGCCCAAGCCGCTCCCACACCCCCCGT
GAACGTCGGCCCTGACGCTTCCTTCGAAGCCCCCGCTCAGGCTGTTTCTA
AAAACCCATTCGATCCTTTCCTCGGCGACTGTTCCGGCGTGGACGAGACC
AAGACTTCGGACGAGGCGGTCGAAAAACAGCCCGAGCCGAAGGCGACTTC
GCCTGCCGTCTCCAAGTGGCACCGCGAGCTGTGCTCCCTTGCGGAAATGG
GATTCGAGAACACTGCCCGCAACATCACCCTGCTGGAAAAGCACGTTACC
GCTCCCGGGAACCCCGGCATGGAGAGGCAAGAAAGATTCCTGGGTTGAAC
GTTGAACGAGTTTCTATAATTTTCTTATGGGGGGGGGGCAGGGGATATAA
AACAAATCATTGTTTTTTTCTCAACACAGTGGATTGATACACAAAACGTT
CATGCTTCAACTCTCACTGTTTCTCATCACGTGCGCTCCCGACGACGCCC
CACCCCTTGGACCGAAAAATGAAACAGGGTGCTGCACGAGCTGCTACGAG
GTACTTAGCTTGTGATTCTTCCATGATGATACTGACGACTTCGTCAGGAG
TGCCACCAATGCGGCCTTAATCGACACCGTGCTCTGTTGGCGGCATCTAT
TGGGTAATCCCTGTTTTTTTTGCAAGGGTCAGGAGAGAGGCGCAAGGTTT
TTGTTGTTGATAAAGCACGGCACGGCATGGCCGGTTTGCGATATAATACT
ATAAATAGTGCAAACGGTGTGTAAGTTTCCCGAGAAACGCTGCTGCAACC
CATGCCCCTGTTGTGGCACGATTTGTATGGATGCGGAGGGTGGAAGAATT
TGGTATATGTTGAGGGGATGCGTAAGGGACCGTAGTGGGTGTAGAGATCC
CTTCGTTCGTTCGGAATCCCACGATGATCGACGAGGATCTCCGCAGTTGT
AGCTGGTATGTGGAATAATGCGGTAAATGGGAGGGGGAATGAAATGGCTG
GTGGTACGAAACAGGAGTTCTCGCCCAATGAGGAGGAAGTCGACGTGTTC
CTGCATCATCTGTGCGCGACGATCACCTTGGGCACTGCATCGAAAAAAAA
ATCGAACGTTATAAAGTAAACCCACTGATGACAGTGGTGTAGCCAGGAAG
CAAGTTCGAGTTCCGGGTAAACCGGCTAATTACATAAAGAGAAAGGGTTC
TGTTTCTCTTGGTTACAACTGGGTTATCCCAGGTGATACTATAAATAATT
CGACATGGTGTATATATTTTTGGAAGGTTTTGAAAATCTGTCTCCCATAA
ACCCACGATGTCATCAACTCTTCAGTACGGGATGAGTGATCATTTGCATC
TCACGGCAGATAAACTCACTAACGGCTCATTTCGGAAAGCGGCTTACGTG
GCGCGACGGTCTTCCTGAGATGTGTATGTATTACAGTATCTTCTCTTGCC
AGCGCCTATGCAATGGGTCCCAAATATGTTTTTTTTCGAACTCTTTATTC
CGGACGTTTTTCATCCACCTTCCTGCGGTGCGTGCATCAATTTTTCTCGC
GAGAAGAATTCAGACGTTCCTTTCCCTCGTCGACCGTCGAGTCGAATTTT
GTGTACCAACGATCTACTTGCTGGGCATTTTTTAAAAATATTTTCTAGTG
AGGAGAAATCCCAATTACCAGAATTGATTTCACGCCCCCAACGTGTCAAG
GTTACGAGGTTACCAACTGAACTACCGGCCCACATGAGCTGAATAGATCG
AAAATCCGAAGAGATTATCCGGCTGCGACGGTTGTGTTTCACAGCAGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig888:45799..51346-

>mRNA_A-nodosum_M_contig888.7.2 ID=mRNA_A-nodosum_M_contig888.7.2|Name=mRNA_A-nodosum_M_contig888.7.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=2655bp|location=Sequence derived from alignment at A-nodosum_M_contig888:45799..51346- (Ascophyllum nodosum dioecious)
ATGGTACGCTTCGACTCGGAGGAGGAGTTCGTGGCTGCCATGACCGGATT
CATGTCCTGGAGGAGCTGCCTGCGCGTCGAGGTCACGGTCCTCAAGTCCG
TCCCTTCCTCCGCAGCTGTTTCGGCCGATACCTCCGCCGAAACTGCCCAA
CCCGCCGCCAGCACTGTAGTCGGTAATCAAGGAGAGGCCGAAACGGAGAA
GGTGGCGGTCTCGGAGGCCACGCCCTCTGAGATGACCGAGCCCACTCCGT
CTGAAAGCGGCAGCATGATGTCCTTCGTGAGTGACGTGACTCGGTCGACC
ATTTCTGGAGCTACGGCCAAGATTCCCGCCGGGCCTGTTGCACCTCGTCC
GGAGCCTGCCCCTGCTGCCGCCACATCGACCGCTGGTGATGTTCCCGCCA
CAATTTCTGTGGAGCCTGAGGTACCTCCTCCGGCGGCCCCCTCGCCGGCA
GGGTCGTCTGCGTCAGCAGCCCAATTCGCAGCCTCCGGCGATACCTCGGC
AACGACGCCGACCGCCCAGGCCAAGGCATTCCTTACTCAAGTACTTCCAA
GCCTGGCAGATGTGCTCGCCCGCTCCATGTACGCGGCGCAGATGATGCCC
AACGCGATGGCGCCTCCGACCTCACAGTCCTCGCGCAATGCGGAGGATAT
CTTTGGTTCTACAGCCGCGGGACTCGCAGCGGCGGCGGCCACTGCGGCGG
CCACAGCCGCCAGCATGGCGTCGAGCGTCAGCTCCGTCGCCGAGAATGTG
CAGGCGCCGGTGGACCATGCCCCTGCTAACACCAGTGGCGCTGTCCCGGC
GGCTCCTGCCCAGCCACCTGTTGTGCCAGCTGGCAACGCCCCCGCTGCTA
CACCTGTTTCGGCTTCGGCTACTCCCCATGAAGCTAATAGCCCGGTGGTG
CACACGGGCATCGTGTGCGATGTCTGCGAGGTGTGCCCGATTGTGGGCAC
GCGGTACAAGTGCGCGGTGCGCAGCGATTTCGACCTGTGCGAGGCGTGCG
AGGCCGTCACCGGCGCCGATTCGCCTTTCCCCTTCCTGAAGATTAGAACG
CCTGCCCAGGTTCCATCCGCGATCGTCTGCCTTCTCAGGCCCGACCAACC
CGCCAGCATCGAAGAGGCCTCGACCGGAAAGAATCACCGTGGCAACAATG
CCTCGGGGTCGAGGTCCTACGCGCCCGGACAGCCTTGGCGCGCCAGGAGG
AGCCCTCAGCGCGGGGGCTGGGGTGAGGGCCGCAGAAACTGCCAACGCTG
GATGAAGGACATGGCCCGCCGCCAGCAGCAGCAGGAGCTTCTCGCCGGCG
GCAGGGGCTCAGTTGTCCCACCAGGTGTCGAGGTCGTGCGGTGCGCGCCG
CCGCCGTGGTGTGGCCCCAGGATGCAACGCCGCAAGCAGGACGACACCGC
CCCGCCGACCGCCGTTGGCCAGAAGTCTGCGGAAGAGCCCGTCAAGAAGA
GCGAGGCCGAAAGAGATGGTGTCGAGCCCCCCACTCCTCCCGCTAGCGTC
GCCAGCAGCGAACATGGTTCTACAATCGTCGCTACCGCCGTCTCTGACCC
CGCGAACGCTGGGGTCGCGCAAGCCGAGGTCGCTCCCGAGGAGGTGGTGG
AAGCCGACACGGTCGAGAAACCCGCTAACGACCCTTTCAGCTTCTCCGCG
GCCACGGAGGCGGAGGCGGAGGCATCTCAGCCTCCCAACTACCACGACCT
TCTGGCGACGTCCATGCGCTCGCTTGCTTCTTCCATGTCCTCATCTCACC
CGATCGCCGCGGCACCTCAGGAAAAGTCCCGTGGACACGCGGGCTCGGGT
GAAGCTAGCAAACCCCAGGGAAAGCCCATGGCCCGTTTTGTGACAGACGT
GTCCGTGGCGGACGGCAGCCCTTTGCCGCCCAACACCCGCTTTGTGAAGA
CATGGTGCATGCGCAATGACGGTGCGGTGATATTCCCCCCCGGGTGTAAG
CTTATGCCCGTCGGAGGGGATCTCATGTCCGGTCCGGAAGATGGAGTGCC
CGTGGAATCACGCGCCCCTGGAGAGGAGTTCCATGTGAGCGTGACGCTTA
CGACGCCCATCCAAAGCGGCCGTTACATTGGCTACTGGCGCCTGCGCACT
GCTGAGGGCCAGAACTTTGGGCACCGTATCTGGGCCGATGTTCTCGTGAC
AGGAGGCACTGCTGACCTTATGGCGGAGGGCAGCGTGGATGGCGACTGGG
ACCTAGTGAACATGCAGCGCCTGTCCAAGGCGGTGGAGGACACCGCGAAG
GACGCTCAGATTGCCGCAGCCGATGCCAAGGCCGTGGCCAATTCGGCTAC
CGATGCGGCCGCTGATCCTCCAGCCCAAGCCGCTCCCACACCCCCCGTGA
ACGTCGGCCCTGACGCTTCCTTCGAAGCCCCCGCTCAGGCTGTTTCTAAA
AACCCATTCGATCCTTTCCTCGGCGACTGTTCCGGCGTGGACGAGACCAA
GACTTCGGACGAGGCGGTCGAAAAACAGCCCGAGCCGAAGGCGACTTCGC
CTGCCGTCTCCAAGTGGCACCGCGAGCTGTGCTCCCTTGCGGAAATGGGA
TTCGAGAACACTGCCCGCAACATCACCCTGCTGGAAAAGCACGTTACCGC
TCCCGGGAACCCCGGCATGGAGAGGGTGCTGCACGAGCTGCTACGAGGTA
CTTAG
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