|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1453 |
| Hectar predicted targeting category | signal peptide |
| Exons | 3 |
| Cds size | 948 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680870304.6268537-CDS-A-nodosum_M_contig888:146121..146165 | 1680870304.6268537-CDS-A-nodosum_M_contig888:146121..146165 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig888 146122..146165 + |
| 1680870304.6412065-CDS-A-nodosum_M_contig888:146578..146651 | 1680870304.6412065-CDS-A-nodosum_M_contig888:146578..146651 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig888 146579..146651 + |
| 1680870304.721723-CDS-A-nodosum_M_contig888:146957..147788 | 1680870304.721723-CDS-A-nodosum_M_contig888:146957..147788 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig888 146958..147788 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680870304.7330434-UTR-A-nodosum_M_contig888:147788..148293 | 1680870304.7330434-UTR-A-nodosum_M_contig888:147788..148293 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig888 147789..148293 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig888.28.1 >prot_A-nodosum_M_contig888.28.1 ID=prot_A-nodosum_M_contig888.28.1|Name=mRNA_A-nodosum_M_contig888.28.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=316bp
MWAFCGWCIACDLYMVFVRCQMLPSSVCEDCRVRYVKGEGPPVRVVKPKP
RSLKTRLNKSHSLPGDTFPSRVSVKALSARFSSQPGSVVVGEKMTRMVSL
PFGNEVMKPSDTDLGESEQVPLSPIKVRVSGDHDTDSSEHDDKVTSRPNS
VGARLSIVELSDNWANTDTLGLSRKCSAKEFARTSGGSGQRIPSKMLAMD
RKTSRVAAAVEEYNKVFSQRLAKDFSKTNETAPAPRPMSRKTSGAFSDST
YSTARPCSSLPISDLDIESAAAVNHCKVGNSASAVDFPDLSETARDCQRR
EPSIAGGELQLSLPL* back to topmRNA from alignment at A-nodosum_M_contig888:146122..148293+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig888.28.1 ID=mRNA_A-nodosum_M_contig888.28.1|Name=mRNA_A-nodosum_M_contig888.28.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2172bp|location=Sequence derived from alignment at A-nodosum_M_contig888:146122..148293+ (Ascophyllum nodosum dioecious)
ATGTGGGCGTTCTGCGGATGGTGCATCGCGTGCGATCTCTACATGTGAGT
GTGCTAACCTCGTCATTGGCCATTTCGTCAGCAAAAAAAGTTGTGTAACT
ACTATACGAACATATATCTTGGAAACGGCAAATACATTGTAGACACGATA
CGTATGCAAACATCGACAGAGAAACCGCACGCAAGTGGGCGAACCGTAGT
AAGCTTGTGGCCTTGATTGCCAGGACTATACCGTACGCAAGTGGGCGAAC
CGTAGTAAGCTCGTGGCCTTGATTGCCAGGACTGTTAGGCAAGGGTTCCA
CGATTCCTACGATATTCACAAATCTATTTCGGTTCGGTAGTCGGTCTCGA
GGTGTTTTTTTGGTGACTTTATTCGCCCCGCCCAAAAGTGCTGCCGTTCT
GCGGTGTACATCAACTGTAGGCCCTAATTCGCCCCCAATGCGTGTCATTC
CTGACAGGGTGTTCGTTCGCTGCCAAATGTTACCGTCATCAGTCTGTGAA
GATTGCCGAGTGCGCTACGTCAAGGGGGAGGTGCGTAACCACGTACATAT
TGTACAGTAGCTTCAAAGTACATGTTGAAGAGGATGGGGACGCGCTAGCA
CTGCCCTGTGATACCGGCAGTTCTGTATTAAGACAAACTCGAGAGGGAGA
AACCTGAGATCTACACAGGTCGGATTTGCCACCTAGTCGACATTGGCGTT
TGCGTCAAGACCGCGTCGCCTGGCCTAGGACCAGAAAATCCACATGAAAA
ATTCCGTTCACCACCAGTGGATGACTCAACCGAGTCTAAAACGTTCCCTC
ATACCTTGATTTCTTGGCGGTTTCGACTTCGTGAAGGGGCCGCCTGTAAG
AGTGGTAAAACCAAAACCTAGGTCATTGAAAACGCGGTTAAACAAGAGCC
ACAGCTTACCAGGGGACACGTTTCCTTCAAGAGTCTCGGTCAAGGCACTC
AGCGCGCGGTTCTCAAGTCAACCTGGGAGCGTGGTGGTCGGAGAGAAGAT
GACGAGGATGGTCAGCTTGCCATTTGGCAACGAAGTCATGAAACCAAGTG
ATACCGACTTGGGGGAGAGTGAACAGGTTCCCCTATCGCCAATAAAGGTG
CGCGTTTCTGGGGACCACGATACTGACAGTTCTGAGCACGACGATAAGGT
CACATCTAGGCCAAACTCGGTGGGGGCGCGGCTTTCCATCGTTGAGTTAA
GTGATAACTGGGCTAACACTGACACCCTCGGTCTTAGTCGCAAGTGTTCG
GCTAAAGAATTTGCGCGAACTTCGGGGGGGAGCGGGCAGAGAATACCTTC
GAAGATGTTGGCCATGGACCGCAAGACGAGCAGAGTGGCGGCGGCGGTCG
AAGAGTACAATAAGGTGTTTTCTCAAAGACTTGCAAAAGATTTCAGTAAG
ACCAACGAGACGGCCCCTGCTCCGAGGCCGATGAGCCGAAAGACCAGCGG
AGCATTCTCTGACAGTACGTACTCCACGGCGAGACCGTGCTCCAGCCTGC
CAATCTCTGATTTGGACATCGAATCAGCCGCTGCTGTGAACCACTGCAAA
GTGGGCAATTCCGCAAGCGCTGTGGACTTCCCCGACCTGTCCGAGACAGC
CCGTGACTGCCAACGTCGAGAACCCTCCATCGCAGGCGGAGAATTGCAGC
TGTCACTGCCGTTGTAGCAAGGCTCCCATTGCTGGTGCATACGAATGCAC
TCGAAGAATCACAAGCTTATACAGCAGTCAAATGGTTCGGTCGAGCACAC
GGCGATATTACGAGAGCTTTGGCGTGAGTATTTATAGCGCAAATCGACAC
AAATCTGCGAGCCGGCAAAGGGACGCTCTTCCTTGTAGTAATTTTGAGCT
CACGCGCGCGGCGTTTCGCCGATACAGTATAACCTTTGAGGTTCTTGGAT
TGACTGGACGCAACGGTCCGATCGTCTGCGATCGCCGTAACCACGAATGG
TTATTAGGGTATCCCGTAGGTGATTCGTCGTTTTTCATTAAGGCTATTAG
CGACGACAGGAACAGGAAACGTAATACTTCGTATATTATTGTAAATTGCT
CGTCTCGGGAGAAGCTCGGAGGCTGAAGTACATCATCAGAACCTTCGACG
TCCCAAATCACGGATACAAAATTAATTCCGTCGGAGCTTGTTCAGATGAA
GTGTATAGGAACATGTTGGGGA back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig888:146122..148293+ >mRNA_A-nodosum_M_contig888.28.1 ID=mRNA_A-nodosum_M_contig888.28.1|Name=mRNA_A-nodosum_M_contig888.28.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at A-nodosum_M_contig888:146122..148293+ (Ascophyllum nodosum dioecious)
ATGTGGGCGTTCTGCGGATGGTGCATCGCGTGCGATCTCTACATGGTGTT
CGTTCGCTGCCAAATGTTACCGTCATCAGTCTGTGAAGATTGCCGAGTGC
GCTACGTCAAGGGGGAGGGGCCGCCTGTAAGAGTGGTAAAACCAAAACCT
AGGTCATTGAAAACGCGGTTAAACAAGAGCCACAGCTTACCAGGGGACAC
GTTTCCTTCAAGAGTCTCGGTCAAGGCACTCAGCGCGCGGTTCTCAAGTC
AACCTGGGAGCGTGGTGGTCGGAGAGAAGATGACGAGGATGGTCAGCTTG
CCATTTGGCAACGAAGTCATGAAACCAAGTGATACCGACTTGGGGGAGAG
TGAACAGGTTCCCCTATCGCCAATAAAGGTGCGCGTTTCTGGGGACCACG
ATACTGACAGTTCTGAGCACGACGATAAGGTCACATCTAGGCCAAACTCG
GTGGGGGCGCGGCTTTCCATCGTTGAGTTAAGTGATAACTGGGCTAACAC
TGACACCCTCGGTCTTAGTCGCAAGTGTTCGGCTAAAGAATTTGCGCGAA
CTTCGGGGGGGAGCGGGCAGAGAATACCTTCGAAGATGTTGGCCATGGAC
CGCAAGACGAGCAGAGTGGCGGCGGCGGTCGAAGAGTACAATAAGGTGTT
TTCTCAAAGACTTGCAAAAGATTTCAGTAAGACCAACGAGACGGCCCCTG
CTCCGAGGCCGATGAGCCGAAAGACCAGCGGAGCATTCTCTGACAGTACG
TACTCCACGGCGAGACCGTGCTCCAGCCTGCCAATCTCTGATTTGGACAT
CGAATCAGCCGCTGCTGTGAACCACTGCAAAGTGGGCAATTCCGCAAGCG
CTGTGGACTTCCCCGACCTGTCCGAGACAGCCCGTGACTGCCAACGTCGA
GAACCCTCCATCGCAGGCGGAGAATTGCAGCTGTCACTGCCGTTGTAG back to top
|