mRNA_A-nodosum_M_contig888.19.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_A-nodosum_M_contig888.19.1
Unique Name	mRNA_A-nodosum_M_contig888.19.1
Type	mRNA
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig888.19.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig888.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig888	contig	A-nodosum_M_contig888:68248..75474 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Model size	164
Hectar predicted targeting category	no signal peptide or anchor
Exons	2
Cds size	162

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680870304.4320748-CDS-A-nodosum_M_contig888:68247..68333	1680870304.4320748-CDS-A-nodosum_M_contig888:68247..68333	Ascophyllum nodosum dioecious	CDS	A-nodosum_M_contig888 68248..68333 -
1680870304.5137265-CDS-A-nodosum_M_contig888:75398..75474	1680870304.5137265-CDS-A-nodosum_M_contig888:75398..75474	Ascophyllum nodosum dioecious	CDS	A-nodosum_M_contig888 75399..75474 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig888.19.1	prot_A-nodosum_M_contig888.19.1	Ascophyllum nodosum dioecious	polypeptide	A-nodosum_M_contig888 68248..75474 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at A-nodosum_M_contig888:68248..75474-
coding sequence from alignment at A-nodosum_M_contig888:68248..75474-

protein sequence of mRNA_A-nodosum_M_contig888.19.1

>prot_A-nodosum_M_contig888.19.1 ID=prot_A-nodosum_M_contig888.19.1|Name=mRNA_A-nodosum_M_contig888.19.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=54bp
SHDPVALRRLAEQSISALIDSCFCLSGKRSNHAHSSKFRFDATLNHVAHG
TPS*

mRNA from alignment at A-nodosum_M_contig888:68248..75474-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_A-nodosum_M_contig888.19.1 ID=mRNA_A-nodosum_M_contig888.19.1|Name=mRNA_A-nodosum_M_contig888.19.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7227bp|location=Sequence derived from alignment at A-nodosum_M_contig888:68248..75474- (Ascophyllum nodosum dioecious)
TCGCATGACCCGGTCGCGCTCAGGAGGTTGGCTGAACAATCCATCTCGGC
CTTGATTGATTCTTGCTTTTGCTTGTCTGAAAAAAAAAAAAAGCCGGGGA
GTTAATTCGCACGTGCTCAGTATTCCGTAGTTAGGTAGATCTCGCCGTCC
CTGCTAATATCTTGGAAAGTAGTACCAGTAGTTGTTTACCGGTATTTCAC
TCAACGTACACGATTTAATAAATGATTCCGAGAGAGTTCGTTTTGACAAA
CGCGAACAAGCAACTGAGAAAATGGGCTGATTGTTTGGAGTCGTCGGACG
CAACGCACCGCATGGGAAGACGCGGTTGTGTCGGGCCCTCTGTGACATCC
ACGGTAAACTTTTTATATCAATAAGATCTATAATAATAGCTCTGTAAAGT
TAGCCTGCCGAGCTAAAATCGGAAACGTTTTGAGGTTATTGAAATGAGCG
GTACACTTACGCACTTTCATTCTCTACTACCGTACTGTACTGAACCGGGG
GATAGGGAGGGGGGGGGGGGCGGGGTCACTATAATAAAGTCACAATCGCA
ACGTTATACATAGCCCGTACTTTCAACATGCCCACTTCATAGGGGCGGGG
TCACTACAAAGTCACAATCGCAACGTTATACATAGCCCGTACTTTCAACA
TGCCCACTTCATACCATTAGTGGGTGTGGGAAAGAGAGGCGCATATTAGT
TGGTCTATGGTGACCTGCCAGGGCAGCACTGGTTCAAAACTACCTTGAGC
TTTACTGGCCCTGTGCCGGTGTACTCTCGGCAGTGAACGCTATCGATAGG
CAACTGTGTGACCCGATGAACTCGGGACTGACCCAATAATGGCGTATGGC
GGTTTTGAATTAAATAAAGGGACGCCGCCGCGGAACTCGGGAGGAATCCC
GTAAGTAAGCACCAGATTCAGCCTGAGTATGGAAATGAGCAGGCTGATGC
GGGACGGGACTGCCGAACCCGTCTCGCGAGGCCAAATTCTCAGGCGCGAT
CGCGAAGAGGAAATATTTTTTTCCTATTTACCTGACCACGAGCAGGATTG
GCAACCTTACCCGGTTGATCCATACTCCTGCAATAATATGTAACCATACA
TTAACATGACCGAAACGCCATTCGCCCCTAAACCTTTCTCGTTAATCGTT
CTTTTTCGTAACGTTCGTGTTATTTTTTATACTCCCCAGCTCAAAGGGTC
TCTGGAGAGTGACAGTCGGTGCACTTCTCAAAGGTTCGCGCCGGGAGAGA
GGAGCACGTCCACCAACCGATAGCGTAAAAAATAAACGGCAAATTAATCT
CTAGACGGCTTTGAGTAAAGCAAATTCAGTACCGTATGGTCCTACGGTTT
TGATATATACAGACTTTTAAACGCTACTACAATAGCTACGGTACATTCTG
AATAATATATATGAATGCGCGCTTTCATTCTCTACTATCGTACTGTACTG
AACCGGGGGATAGGGGGGTCACTATAAAGTCACAATCGCAACGTTATACG
TAGCCCGTACTTTCAACATGCCCACTTCATACCATTAGTGGGTGTGGGAA
AGAGAGGCGCATATTAATTGGTCTATGGTGACCTGCGAAGGCAGCACTGG
TTCAAAACTACCTTGAGCTTTACTGGCCCTGTGCCGGTGTACTCTCGGCA
GTGAACGCTATCGATAGGCAACTGTGTGACCCGATGAACTCGGGACTGAC
CCAATAATGGCGTATGGCGGTTTTGAATTAAATAAAGGGACGCCGCCGCG
GAACTCGGGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGG
AAATGAGCAGGCTGATGCGGAACGGGACTGCCGAACCCGTCCCGCGAGGC
CAAATTCTCAGGCGCGATCGCGAAGAGGGAAATATTATTTTTCCCTATTC
ACCTGACCACGAGCAGGATTGGCAACCTTACCCGGTTGATCCACACTCCT
GAAATAATATGGGTAACCATACATACACATGACCGAAACACCATTCGCCC
CTAAACCTTTCTCGTTAATCGTTCTTTTTCGTAACGTTCGTGTTATTTTT
TATACTCCCCAGCTCAAAGGGTCTCTGGAGAGTGACAGTCGATGCACTTC
TCAAAGGTTCGCGCCGGGAGAGAGGAGCACGTCCACCAACCGATAGCGTA
AGAAATAAACGGCAAATTAATCTCTAGACGGCTTTGAGTAAAGCAAATTC
AGTACCGTATGGTCCTAAGGTTTGGATATATACAGACTTTTAAACGCTAC
TACAATAGCTACGGTACATTCTGAATAATATATATGAATACGCGCTTTCA
TTCTCTACTATCGTACTGTACTGAACCGGGGGATAGGGGGGTCACTATAA
AGTCACAATCGCAACGTTATACATCGCCCGTACTTTCAACATGCCCACTT
GATCTTGATACCAGTAGTGGTGGGTGTGGGAAAGAGAGCGCATACCTGAC
CATGAGAAGATCTGGTCGATCTTGATGTGCGTGTGCCCCACCATCATGAA
ATTGATTTCCACACGACCAATGATGCCCCGGCCGACAAGCGAGCCCAAGT
ACCCGACAAGGATGTGATTCTTGTTCTCTCCGACGCAGTTGTCTACCTGC
AAGAACAACTCCTCGATGTAGGCGTCGCCGCCGTCGTTAATGTGGGTCTC
GAAGATAGGGGTGAGGGCGTGGTGGATTGCTGTGCAGATGAGGTTGCTCC
CTGGGCGCGAACGGAGAAGACAAAAAGTAATTTACAAAAAGCGCAGTCTT
TGAAACAAGAAAAGCTTTTATTTTATTAAAACACTCAAGAGGTTCTACAG
TAAGTAACTGAACCGCTACAACTCTACCTCCTCTATCCCACATCTTTGTT
TGAGTTTACGAATTATATATGCTTCGGGTACTGTGAATTTCCGTGTCTCT
CCGGCGGAGCTTCTGTATCTAGAACCGGTACAAAGACAACACCGCCCCTC
CTTTGTGTGTGTTCACATGAATCTTTGGTGTGCTCACATGCGTCTTAACG
AATGGAAGATAACTTATCCGATATGACGTTTTCGTCCGGTTAAGATTTCC
CTGCGGAGTGTTTTCGTCGAACAATATCTGCAACATACATCCCATCTCAA
AGCCCCTTTCCAAGAATAACACGCGCTTATCATAGTTTCGATAGGCAAGC
AACAAACTGACCTCCTCCGACAGTTTGCGGTGCAAGGAAGAACTGGAAGA
AGTTGCTTGGGGAATAGACGCAGTAAATCTTCTGACGTTCTGAGTAACCC
CTGAGATAAATTTTACACGTAACTGCGGATTACACAGTATTACAGTATGT
TTTTTGGAGATATCGCGACGAGTACAACTTTCCTACATTGTGATTTTGTA
TCATAACTTCCCGGACGTCGTGTACGCGGGGTGACGATATTATTGGTCGA
TCGAAGTGCAATGTTAAGAATGTGGGTCTGTGATGGTGAAACGTTTCCAG
GGAATCCGCATATCCCCTTATTTCTCGTTAGACCAACTTATCATTCTACT
CCACGATGGAAATTAAACAATAACAAATTATAGCTGTCCTCCCGGGTACG
ATGAAAACGGTCGCAATCGCCTCACTATACGTGTCCAATCATCGCTACAA
ACCTCACTTGTCAGTATCGTGTGATTGCGGCGAGACAGCGGCAGGCAGAA
TGCCGTTTGGCAGGCAGCATCCGCTTGAGTGATACCTTCCCAGCGGTTTC
ATGTCTTGTAGCGAGCGCAGCGCAATTGCTTCGATCATTGCAATACGATC
AGGATCCTTGCTCACCAACTTAAATCCCGAAACGAATGCATCAAAATATT
TGAGAAAATTTAACAGGGAAGTGTTAGTGGGAGTATGACAATTAGGACGT
CGGTGGTTGAGAAACAGCACTACTACTGCACGAAGCAAACTCTACAACTA
CTTGTATGGTCCTTAAAGCGAGGAACACGGACGTACTTGCCACCATTAAA
ACGTATTATAAGCAATAATATCTTTACACAGTAGGTACGTGTCTGTTATG
GTCTCACCCCTAAATGTCACGCTCTGTCGTCGGTTGTGCGCTTCACGAGA
GCATCATCCGCACTAACCCTTCTAGTTCCGGGAGCTCCCAACAGCGTTGC
ACTAAATAGCGTACACAGCGAACATTTCATGAAGTCACCCCCTGTCTTAG
GCTTGATGTTGGGGCGGTACTTTTTCCACACCTTGTAGAAATAGGTCTTA
CTGCACCCAACGCTAGAACCGTACAGCGTGCGCAAGTTTCGCTGACACGT
CTCAAAAAGTTCCTGATTGGCACCGGGGAAGTATGATCCAGCCCGCGCGC
ATTTTGGGCCAGGGCGAGGGGGAGGGGGGTGGTGGAGGGAGGGGGGGGGG
GGTATAGGGGGTGAGGAACCTGTGCATTGCAGGTTTATTTTCTTTGAAAG
ATACTGTACGCAAACTTAACAAAAAAACTCCACGTTTAAAGTAAAAGCTG
AATGCGCCTAGACCTTCTGAGTATCCCCCAGTCAGGAGAAAAATCTAAAA
AAATCTAGGTTGGATCATAGTAGGCTGCAAATACAAACCCTCTTCATAGC
ATTTAAACGGGTGTCCCGATGGTAGTAACATCGGGTCAGCAGTGTATAAT
GTCGGGGAGAAGCCCACCGTTATAATGTACACTTACATTATTAATCGCCA
TCCCCGATATTATACTGTTGACCCAATGGTACCACCATAGGGGAATCCGT
TTAAATGCCATGAAGAGGTTTTGTATTTGCAGCCTTTGATCCCACCTAAA
CGTTTTGACATTTTCCCCCCCCTAACCGGGGGATGCTCAGAAGGTCTAGT
CTTCTAGGTGTGTTCTATTTTTCTTTCAAAACAGAAGACACTGTAGTATA
AGAGGGTAGTAATAGTATAATATCGCCATCGAACCATCGTACCAAAATAG
GCGCTTGGGTCAACAGTAAAATATCGGGGATAAACCCACCGTTATACACT
CTACCGCAAATTACCACAATCGCACTCTTCTAAATCGTCCCACCACTATC
ATATTATTACCTTCTTGCTGTGAACGTAGAGGTAGATGGCGTCCTTGTGA
GGCATGTGCTGGCCGCATTGCTCCGTGTACGAGTCAAGGTATGTCAGTAT
GTGGCGTCTTGTTTCTGAATACGGATCGTCCTTTTTGTTGTTGTTTTTGT
CAGGTAGGAACCACCCAAAACAGCAGACGAAGGAACGAGTGGGCACACAA
TGTAGCGGGCCGAGCGCTAAACCAGCCCTCCGTTTGAGATACGGCCGCAA
CACGTGCAGCCTATGAAAGCTCCAAATGACTGGGTGGAACACGAACATAC
ATGAAATAAGCTTCTCAACACTACTACTTATTTGTGTTGCAAACCTCGCT
GCAGGGACGGGACTGTCGGAATTCTCGAAATTTTAGTATCGAAGACTCTT
TTATGTTAGTATATTACCAGTACTGTATATTATAGCGCTAGGTTCATCTT
GTTTAAATAAAAATCAGAACGCGCCTAGACCTTCTGAGCATCTCCCAGTC
AGGGAGGAAACGATGTAGCACATTTTTTACGACGGTGTGCCATGCGCCAC
ATGGTTGAGGGTGGCATCGAAGCGAAATTTACTGGAGTGTGCGTGATTGG
AACGCTTACCAGGTAAGTGCTGTTGAACCCGACATCGATTCGAAATTGGA
CACTTACGTTTTTCTTCCGGATGAACACGGGTTCCTTCTGGCTGAATCGA
TGGAACACTTTGACACGCCAAACGCCGAGCAGAAAAACTGGTTGCAGACG
TAGATGTCACCAGCTTTCATCGATCCCTGGTTCTTTCCTTGCTTAGCAAA
CGGTACCATCGTCCCTATCCATGCCGTGCGACCCTTACGGCTCTCCAACC
GCGAGAAGTCTTCTTGCTGTCGTCGAAGCTCCTCCTCGATGTCGCCGTTG
CCGGTCAAAAATGTTTCGACGCATCTCATTGTTTGACAGCACACGAAGGA
CTCTTTCACCATCACACGGACGTCGGTTGTCGATGTCCGTTTACAGCGAT
TCGCCTCGGGGCCTTCCGTGCGCTGATCTTTTGCCGGTCCGGCCGCGAGG
CAAGGGTCAATGTTTTCCAGGTTATCGTCACTTAACCAGGCGATAGGGGT
TCTAGAGGCCGTGTAAGATGATCTCACAAAAAAAGACGACATGCTTCTGT
TATATTGACGTTCATCACGAACGCGATAAATTAAGCTAGAACAGCCGACT
GGACAATGCGGGCAGCGCCTAAGTAATAATGGGTTCGATCTTCTCAAACG
TTTATACACATTGGAATATAGTTTTTAATCCACTTCGAGGCGAAAGCTAG
TTCGATCCCTAGATCGATGGTCTCTACATAAGCAAGACTAGTTGAAAAAA
TCCCGAACATATACGTCATTTTAATGTACCCAAATAGTTATTTTCTTAAC
CTTTAAGCATTGTGTGGAAGGAAAACCGTTGAAATACAAAAAAAGAACAA
TTTGTTGATCGAAGAGGCCAAACAGTTCTTTTTTTAACTATGTACGGCTT
CAATCTTAGCCAATAGGTTTTATCAACTTTATGACAATTATAAAATGGCT
CCATTTTTCGGTGTGGAAAGCTATGTTGCGCGCCATTTGCGGTACTGTTT
GATTTGGCAATAATGTTGAATCAAGTATGTAACAAGGTTTTAATCTGAAC
ACTAAATACACGTGTTCCCTTGTGTTAGAGGGTACGGCTGCTCCTAACAT
AGCGAGGACATCAAGGTGCATTCATAGACAAACTCTTCCGAGATGATAAC
GAACCCTTAGGCAAAATAACCAGAATTTGACGAATAGTCTACATATATAT
AAGAATAATACAATATGTACATACATAAGATTATAAGAATAATTTTTGAC
CGGCAAGGACGACATCGAGGAGGAGCTTCGACGACAGCAAGAAGACTTCT
CGCGGTTGGAGAGCCGTAAGGGTCGCACGGCATGGATAGGGACGATGGTA
CCGTTTGCTAAGCAAGGAAAGAACCAGGGATCGATGAAAGCTGGTGACAT
CTACGTCTGCAACCAGTTTTTCTGCTCGGCGTTTGGCGTGTCAAAGTGTT
CCATCGATTCAGCCAGAAGGAACCCGTGTTCATCCGGAAGAAAAACGTAA
GTGTCCAATTTCGAATCGATGTCGGGTTCAACAGCACTTACCTGGTAAGC
GTTCCAATCACGCACACTCCAGTAAATTTCGCTTCGATGCCACCCTCAAC
CATGTGGCGCATGGCACACCGTCGTAA

Coding sequence (CDS) from alignment at A-nodosum_M_contig888:68248..75474-

>mRNA_A-nodosum_M_contig888.19.1 ID=mRNA_A-nodosum_M_contig888.19.1|Name=mRNA_A-nodosum_M_contig888.19.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=162bp|location=Sequence derived from alignment at A-nodosum_M_contig888:68248..75474- (Ascophyllum nodosum dioecious)
TCGCATGACCCGGTCGCGCTCAGGAGGTTGGCTGAACAATCCATCTCGGC
CTTGATTGATTCTTGCTTTTGCTTGTCTGGTAAGCGTTCCAATCACGCAC
ACTCCAGTAAATTTCGCTTCGATGCCACCCTCAACCATGTGGCGCATGGC
ACACCGTCGTAA