mRNA_A-nodosum_M_contig8876.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8876.1.1
Unique NamemRNA_A-nodosum_M_contig8876.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8876.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8876contigA-nodosum_M_contig8876:4739..5097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G4Z8
PFAMsDimer_Tnp_hAT
Model size361
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.46e-08
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870304.2637546-UTR-A-nodosum_M_contig8876:4738..49501680870304.2637546-UTR-A-nodosum_M_contig8876:4738..4950Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8876 4739..4950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870304.276767-CDS-A-nodosum_M_contig8876:4950..50971680870304.276767-CDS-A-nodosum_M_contig8876:4950..5097Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8876 4951..5097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8876.1.1prot_A-nodosum_M_contig8876.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8876 4951..5097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8876.1.1

>prot_A-nodosum_M_contig8876.1.1 ID=prot_A-nodosum_M_contig8876.1.1|Name=mRNA_A-nodosum_M_contig8876.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=49bp
MQALASVSPLKRKQETADARTVKPRSLQSLGVQGWPCVNFTGCPDGLLK
back to top

mRNA from alignment at A-nodosum_M_contig8876:4739..5097+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8876.1.1 ID=mRNA_A-nodosum_M_contig8876.1.1|Name=mRNA_A-nodosum_M_contig8876.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=359bp|location=Sequence derived from alignment at A-nodosum_M_contig8876:4739..5097+ (Ascophyllum nodosum dioecious)
TAAACGTTTTGATATTTTATTGTAACTGCTAAAGGCAAATAAAACTGCTG
CTTTGATTATTGGCATCATGACCTGCCCAGGACATAATCTTCGCATTTCT
CTTTAAACTCAGAACGCGCTCAATGTCGCCTCGTGAGGTCGATGTTATAC
ACTACTCGACACTCTTCAAAAGTATCCTCTAAACCGTGCAGCAGGCATCC
TTTCAAAAACCAATGCAAGCTCTGGCCTCGGTATCACCCCTAAAGCGGAA
GCAAGAAACAGCTGACGCCCGGACGGTCAAGCCTCGGTCTTTGCAATCAC
TCGGAGTACAGGGGTGGCCCTGTGTCAATTTCACCGGTTGCCCTGACGGG
CTTTTAAAA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig8876:4739..5097+

>mRNA_A-nodosum_M_contig8876.1.1 ID=mRNA_A-nodosum_M_contig8876.1.1|Name=mRNA_A-nodosum_M_contig8876.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=147bp|location=Sequence derived from alignment at A-nodosum_M_contig8876:4739..5097+ (Ascophyllum nodosum dioecious)
ATGCAAGCTCTGGCCTCGGTATCACCCCTAAAGCGGAAGCAAGAAACAGC
TGACGCCCGGACGGTCAAGCCTCGGTCTTTGCAATCACTCGGAGTACAGG
GGTGGCCCTGTGTCAATTTCACCGGTTGCCCTGACGGGCTTTTAAAA
back to top