mRNA_A-nodosum_M_contig887.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig887.1.1
Unique NamemRNA_A-nodosum_M_contig887.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig887.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig887contigA-nodosum_M_contig887:33649..36850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1483
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionG-protein gamma-like domain
Ec32 orthologEc-02_005920.1
Cds size216
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870300.8769944-UTR-A-nodosum_M_contig887:33648..337281680870300.8769944-UTR-A-nodosum_M_contig887:33648..33728Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig887 33649..33728 +
1680870300.8937411-UTR-A-nodosum_M_contig887:34667..347221680870300.8937411-UTR-A-nodosum_M_contig887:34667..34722Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig887 34668..34722 +
1680870300.9388447-UTR-A-nodosum_M_contig887:35718..368501680870300.9388447-UTR-A-nodosum_M_contig887:35718..36850Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig887 35719..36850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870300.9087-CDS-A-nodosum_M_contig887:34722..348031680870300.9087-CDS-A-nodosum_M_contig887:34722..34803Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig887 34723..34803 +
1680870300.9265268-CDS-A-nodosum_M_contig887:35583..357181680870300.9265268-CDS-A-nodosum_M_contig887:35583..35718Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig887 35584..35718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig887.1.1prot_A-nodosum_M_contig887.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig887 34723..35718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig887.1.1

>prot_A-nodosum_M_contig887.1.1 ID=prot_A-nodosum_M_contig887.1.1|Name=mRNA_A-nodosum_M_contig887.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=72bp
MSETTLQKVEAEVQKLAAELRSVQQAQMYSTAFDNLLGYVSETPEPFSSA
PPEPNSWHANVGSTGGCCSVS*
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mRNA from alignment at A-nodosum_M_contig887:33649..36850+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig887.1.1 ID=mRNA_A-nodosum_M_contig887.1.1|Name=mRNA_A-nodosum_M_contig887.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3202bp|location=Sequence derived from alignment at A-nodosum_M_contig887:33649..36850+ (Ascophyllum nodosum dioecious)
TAGAATCTTCATAATCCAAGTACACGACCCCGTTATTCACCTGGAAGTAG
ACGAAGAGCAGTAGGCGATCACACAAGGAGGTAAGAGGCAAGCGGAAAGA
ACTGTGTTCCTCGCTCCATACTTGTCAGGGCTGTTACATAGGCTGTGAAG
ACGAAGTCACTACATTGTTGTTTCTCACATTCAGCGTATTGGTTGCCAAC
CCGAAAAAATTACTTTACACGGTGGGTGGCCAATCCCGCTCGTGGTCTGC
TGAACAGGGAAAAGAGAACAAAAGAAAAAGTCTGGCAAATTTTAGTGGAG
CCCATGTCGTTTGTTTTCTCTTTTTAACTCCTGTTTAATTCGAGCTATTG
TAAATAATAGGCTGACCACGAATCGGATAGGCAACAGTCTTTGATCCCAC
CTAAACGTTTTGACATTTTTCCCCCATAACCGGGGGATGCTCAGAAGGTC
TAGGTGCGTTCTGATTTTTCTTTAAACAGCATGAAGTTTTTGAGATACCG
TAAGTATCGGAGTCTTGGTACACCCCCCAGACTGGCTTTCCAGGCTCGAT
TGCTTCACAACCAAGAGGGTGACAATGCCGAAAAGGGCGGGTTTCGAAAG
ATCTCGTCGAGAGCTTTCTTTAGACGTATCGGTAGGTGTCTACATCCTCT
TGGTTGTGGAGCAATCGAGCCTGGAAAGTCAGTCTACGTGTGCCAAGACT
CCGATACTTACGGTAGTTGGTAACGATAGCCCAATCGATCAATGCCAAGA
ACACGCAAGCATACAGCGATAGTCTTGATATCTCACCAGATCCATACCAG
GGGCAGTGCTAGATACTCGGACAGTGTTGACTCCTGGTACAGTATGTACC
ATTGGCGGTTATGGCATGCATGTTTCCTTTATTCTCTCACTCAATAATCC
TTTCGTTGCAGCTTTCCGAGGCAACAGGTACAATGTTTAGCTCTACATAA
GTACTTCGGTTTTGACACATTTCCTTTCCTTTTTATTTCTTCCCTCTTGC
TGTACTCGCTGCGTTGCAGCTTTCCGGGGCACAAGTGATCGCTGACCTTT
GGCCGGAGCGCCTGGTAAGGCGCCATGTCGGAGACAACCCTTCAAAAAGT
CGAGGCGGAGGTGCAAAAGCTGGCGGCGGAATTGCGCAGTGTACAGCAAG
CACAGGTGAGCCGTGAGTGAGCCTTACCCGGATCTCCCGTCATCCCGACT
CACAGTACAAATCTTACAGTACAAACCTCACTCACTTTTACAAGGGAATA
GCAGCGACAGGTCAACTAAACTGTGATGCTTGAGCGTAAAGAAATGGAAA
AAGCTGATGAGGCAAGCCACGAATTAATCTTGATCACTCTTGTTTTTTTC
GCCAAGGCATTCCTGCCATGCGCTTCGCTTCGCACAAATACCCTATACCC
TATTTCTTTTTTTCTTTTCTTTTCTTTTATCTCACTTATAGCCGACGGAC
CTCATCATTACCATCCTGCCTGTGGTCACTAAGGGTCTTCCCATCTCTCC
CCGGTTCACGCCTTACGATTTTTTATCGCGATGCAAGTTCAGCACTCTTA
CAACTCGTCAACTAATGGTTGAATTTTACTTACTCACGTTCCCAAGCTTT
CCGTTACGAAAGAATGAACACAAATCCTACTTTAGTAATAATCGAACTCA
CGACTTCCGCACTAGCAGGTGTGCAGGTTACCTACTAGACCACTCGGGCG
ACGAGGGCTCCCTTGGTTTTTTCGCCAACCTTTCCTTTCCGACTTATTTT
TCGTAGCAGACCTTCTTAATGACCTCCCTGTACACAAGTTCCTCACGCTA
ATTATTGCCGATTAGCGCAATAAGATGCTGTAGAGGGCAACACTAGCACA
GCGACTATGCCATCAACCTAACTACTTATAATTATACTTATCCTCCCAAA
CCACCACACCATCTCTTGGCCAACTGCTCCCTCAGATGTACTCAACAGCG
TTCGACAACCTGTTGGGATACGTAAGCGAAACCCCGGAACCGTTTTCGTC
TGCACCACCGGAACCCAACTCATGGCACGCGAACGTTGGAAGCACCGGCG
GGTGCTGCTCAGTTTCGTGACGTAATCCGCGGCGGTGCGGCGGGGTGCGG
CGGGGGATGACACTAAGTACCGGGTGAAATGAGAGAGGGCGAGAGTCAAG
TTTTGCGATGGAAGTTGGATCAAAATCATGAATATTGTTACCGTAGGTAT
TGAGCCTCGGACGGTACGAAGGAATGGTAATGCTAATGAAATGGGTGCGA
GCAGCGCTCATAGGGGGAAGCGCGGTCGTTTGCGACTTGTGGGGACGGTA
TCGAACCGGAACGCCTACAGCGACGATTGCTGGTGCGCATGCCGCTCATC
CGCCGAGTTTTTTAGCGTTTGGAGTAGAGCGTGTACGTTGTCAAGAAGTG
GAATATAGAAACGGCGTCTCGCGTCGTGCTGGCGAGCGCTGAAGTTTACT
ATCGGTTGTTTATCGTGGACGGACACCGAACAGCTTTGGCTATCTACATA
CTATACAGTACATAAGTGTTTCTAGATAGTGTAGCCGGCGCTTCCCCTCG
CTTTTTGCTCTCCTCCGCGATTCTTCGCTGGATTGCAAAACGAACCAATG
GTGATGCGTGCTTGTGTCTAGATACCTCGGGTACGAGTGATTGCCTGAGA
TCTATCGTAGACCTCAACAAGCTACGAGTAACTTACTGTCTTGGCTGCGT
TACAGTATTCTACTCTCGGTATTAGAGTACCAGTACGAGTAAAGAAGCGA
CGGGGAGCCCCTATCTGCTTGGATTTCTGTCGCAAGTGCGCTGCGAGGAA
GGTTCGCCCCATGGGCGCATGCCAAGTCAGTTTATTTCATTTAGTGGGTT
GGAAAGGTCTTGCTCATTTCGACGAGACCTAGAGCGAGGTTATTACTCTC
TGATGGTGCAGGTGTTGGCTTGATGCTGTAGAAGCGTTGGTCGATTTCGC
TCGCCAAAACGTGGTGCGATCCCTGACATCATCAACAACAGAGGTTCGCC
ACATCGCATGCTGCGTGAACACGACCACACGACCACAACATTTCTACATC
AGATGTCTACTGTTAGTTACACAGTACAGTACTTGAAGACCACCCGCCGC
CGCGATCGGATCGTGTGCGGTGTGCGCATGGCACGCCCACGCCATTGGCG
AAGTTATCTCGATCGAAATATAAAATATATTACTGTGTGGCGATGTGATG
CA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig887:33649..36850+

>mRNA_A-nodosum_M_contig887.1.1 ID=mRNA_A-nodosum_M_contig887.1.1|Name=mRNA_A-nodosum_M_contig887.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at A-nodosum_M_contig887:33649..36850+ (Ascophyllum nodosum dioecious)
ATGTCGGAGACAACCCTTCAAAAAGTCGAGGCGGAGGTGCAAAAGCTGGC
GGCGGAATTGCGCAGTGTACAGCAAGCACAGATGTACTCAACAGCGTTCG
ACAACCTGTTGGGATACGTAAGCGAAACCCCGGAACCGTTTTCGTCTGCA
CCACCGGAACCCAACTCATGGCACGCGAACGTTGGAAGCACCGGCGGGTG
CTGCTCAGTTTCGTGA
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