mRNA_A-nodosum_M_contig8860.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8860.2.1
Unique NamemRNA_A-nodosum_M_contig8860.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8860.2.1 vs. uniprot
Match: D7FN81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.350e-20
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 MGLGVLELTGDHTPSLDALRRATIIVTTPEKWDGITRGWQTRAYVKETGLVV 156
            M +GVLELTGDHTP  DALRRA+IIVTTPEKWDG+TRGW++R YVK+TGLV+
Sbjct: 1531 MDMGVLELTGDHTPDGDALRRASIIVTTPEKWDGVTRGWKSRDYVKDTGLVI 1582
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BLAST of mRNA_A-nodosum_M_contig8860.2.1 vs. uniprot
Match: A0A812ZJH8_9DINO (BRR2C protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812ZJH8_9DINO)

HSP 1 Score: 79.3 bits (194), Expect = 5.390e-16
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 MGLGVLELTGDHTPSLDALRRATIIVTTPEKWDGITRGWQTRAYVKETGLVV 156
            +G  V+ELTGD TP +DAL RA ++VTTPEKWDGI+R WQ RAYV++ GLV+
Sbjct:   12 LGKAVVELTGDFTPDIDALERADVVVTTPEKWDGISRHWQHRAYVRKVGLVI 63
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BLAST of mRNA_A-nodosum_M_contig8860.2.1 vs. uniprot
Match: A0A183UPX3_TOXCA (Uncharacterized protein n=2 Tax=Toxocara canis TaxID=6265 RepID=A0A183UPX3_TOXCA)

HSP 1 Score: 78.2 bits (191), Expect = 1.380e-15
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 MGLGVLELTGDHTPSLDALRRATIIVTTPEKWDGITRGWQTRAYVKETGLVV 156
            M +  +ELTGDHTP L +L +A +++TTPEKWDGITRGW+TR YVK+  LVV
Sbjct: 1284 MKIKTVELTGDHTPDLRSLAKARLVITTPEKWDGITRGWETREYVKDVALVV 1335
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BLAST of mRNA_A-nodosum_M_contig8860.2.1 vs. uniprot
Match: Q235I9_TETTS (Type III restriction enzyme, res subunit family protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q235I9_TETTS)

HSP 1 Score: 77.4 bits (189), Expect = 2.570e-15
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 MGLGVLELTGDHTPSLDALRRATIIVTTPEKWDGITRGWQTRAYVKETGLVV 156
            +G  VLELTGD+TP LDAL +A +++TTPEKWDGI+R W  R YV++TGLV+
Sbjct: 1446 IGKTVLELTGDYTPDLDALLKADVLITTPEKWDGISRNWHNRNYVQKTGLVI 1497
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BLAST of mRNA_A-nodosum_M_contig8860.2.1 vs. uniprot
Match: A0A3P6H6B4_ENTVE (Uncharacterized protein n=2 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A3P6H6B4_ENTVE)

HSP 1 Score: 77.0 bits (188), Expect = 3.510e-15
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 MGLGVLELTGDHTPSLDALRRATIIVTTPEKWDGITRGWQTRAYVKETGLVV 156
            +G+  +ELTGDHTP L +L  A ++VTTPEKWDGITR W++RAYV+E  LV+
Sbjct: 1082 LGMKCVELTGDHTPDLRSLSEAKLVVTTPEKWDGITRSWESRAYVREVALVI 1133
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BLAST of mRNA_A-nodosum_M_contig8860.2.1 vs. uniprot
Match: UPI00144AE24B (Sec63-domain-containing protein n=1 Tax=Lindgomyces ingoldianus TaxID=673940 RepID=UPI00144AE24B)

HSP 1 Score: 77.0 bits (188), Expect = 3.510e-15
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 MGLGVLELTGDHTPSLDALRRATIIVTTPEKWDGITRGWQTRAYVKETGLVV 156
            MGL ++ELTGD+TP    +R A II+TTPEKWDGI+R WQTR YV++ GLV+
Sbjct: 1212 MGLKLVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRGYVRQVGLVI 1263
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BLAST of mRNA_A-nodosum_M_contig8860.2.1 vs. uniprot
Match: UPI001D037D12 (uncharacterized protein n=1 Tax=Bacidia gigantensis TaxID=2732470 RepID=UPI001D037D12)

HSP 1 Score: 77.0 bits (188), Expect = 3.510e-15
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 MGLGVLELTGDHTPSLDALRRATIIVTTPEKWDGITRGWQTRAYVKETGLVV 156
            MGL ++ELTGD+TP    +R A II+TTPEKWDGI+R WQTR YV++ GLV+
Sbjct: 1213 MGLKLVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRGYVRQVGLVI 1264
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BLAST of mRNA_A-nodosum_M_contig8860.2.1 vs. uniprot
Match: S3CE74_GLAL2 (p-loop containing nucleoside triphosphate hydrolase n=2 Tax=Glarea lozoyensis TaxID=101852 RepID=S3CE74_GLAL2)

HSP 1 Score: 77.0 bits (188), Expect = 3.510e-15
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 MGLGVLELTGDHTPSLDALRRATIIVTTPEKWDGITRGWQTRAYVKETGLVV 156
            MGL ++ELTGD+TP    +R A IIVTTPEKWDGI+RGWQ+R YVK+  LV+
Sbjct: 1211 MGLKLVELTGDNTPDTRTIRDADIIVTTPEKWDGISRGWQSRGYVKQVSLVI 1262
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BLAST of mRNA_A-nodosum_M_contig8860.2.1 vs. uniprot
Match: A0A7S4VEP9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4VEP9_9DINO)

HSP 1 Score: 77.0 bits (188), Expect = 3.510e-15
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 MGLGVLELTGDHTPSLDALRRATIIVTTPEKWDGITRGWQTRAYVKETGLVV 156
            +G  V+ELTGD TP +DAL RA ++VTTPEKWDGI+R WQ RAYV+  GL+V
Sbjct: 1469 LGKTVVELTGDFTPDVDALDRADVVVTTPEKWDGISRHWQHRAYVRRVGLIV 1520
[Close]
BLAST of mRNA_A-nodosum_M_contig8860.2.1 vs. uniprot
Match: A0A2P6N4F9_9EUKA (Activating signal cointegrator 1 complex subunit 3 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N4F9_9EUKA)

HSP 1 Score: 77.0 bits (188), Expect = 3.510e-15
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 MGLGVLELTGDHTPSLDALRRATIIVTTPEKWDGITRGWQTRAYVKETGLVV 156
            +G  V+ELTGD+TP++ AL+ A I++TTPEKWDGI+R WQ R+YVK  GLVV
Sbjct: 1374 LGKSVVELTGDYTPNVQALKNADIVLTTPEKWDGISRNWQHRSYVKSVGLVV 1425
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8860.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN81_ECTSI1.350e-2078.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A812ZJH8_9DINO5.390e-1665.38BRR2C protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]
A0A183UPX3_TOXCA1.380e-1563.46Uncharacterized protein n=2 Tax=Toxocara canis Tax... [more]
Q235I9_TETTS2.570e-1563.46Type III restriction enzyme, res subunit family pr... [more]
A0A3P6H6B4_ENTVE3.510e-1561.54Uncharacterized protein n=2 Tax=Enterobius vermicu... [more]
UPI00144AE24B3.510e-1563.46Sec63-domain-containing protein n=1 Tax=Lindgomyce... [more]
UPI001D037D123.510e-1563.46uncharacterized protein n=1 Tax=Bacidia gigantensi... [more]
S3CE74_GLAL23.510e-1565.38p-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S4VEP9_9DINO3.510e-1565.38Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A2P6N4F9_9EUKA3.510e-1563.46Activating signal cointegrator 1 complex subunit 3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8860contigA-nodosum_M_contig8860:15167..15790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FN81
PFAMsDEAD,Helicase_C,Sec63
Model size156
Max annot lvl2759|Eukaryota
KEGG koko:K12854,ko:K18663
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue2.21e-21
EggNOG OGsCOG1204@1|root,KOG0952@2759|Eukaryota
EC3.6.4.12,3.6.4.13
Descriptionhelicase activity
Cds size156
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870300.7473946-CDS-A-nodosum_M_contig8860:15166..152251680870300.7473946-CDS-A-nodosum_M_contig8860:15166..15225Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8860 15167..15225 +
1680870300.7630408-CDS-A-nodosum_M_contig8860:15693..157901680870300.7630408-CDS-A-nodosum_M_contig8860:15693..15790Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8860 15694..15790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8860.2.1prot_A-nodosum_M_contig8860.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8860 15167..15790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8860.2.1

>prot_A-nodosum_M_contig8860.2.1 ID=prot_A-nodosum_M_contig8860.2.1|Name=mRNA_A-nodosum_M_contig8860.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp
MGLGVLELTGDHTPSLDALRRATIIVTTPEKWDGITRGWQTRAYVKETGL
VV
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mRNA from alignment at A-nodosum_M_contig8860:15167..15790+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8860.2.1 ID=mRNA_A-nodosum_M_contig8860.2.1|Name=mRNA_A-nodosum_M_contig8860.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=624bp|location=Sequence derived from alignment at A-nodosum_M_contig8860:15167..15790+ (Ascophyllum nodosum dioecious)
ATGGGTTTGGGGGTGTTGGAACTCACCGGAGACCACACCCCGAGTCTTGA
CGCCCTCAGGTAGCCTTTCGGTTTAACCCGTCCATGGGTGCATTGGTGAT
TCGAAACACTTTTGGTTTGAATAGGCTACGCGATACCGTAATAATAACAA
AGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TACTGTCATAATACTACCTGGTACATTATTGATGCACGATTATTAGAGCT
CTAGACTACTGCTGTCCTGTTCTGTTTTCGTGTTGTTTTTTTAGTATATA
TCAGGCGTGCAGAAGCGAGAAATTTGCACTTACGCGAAACACTCGGAAGC
AACAAAAAAGAACAAAGCCAAAATTTCAAAATTTGTGGTGTCGTGGTAAA
TATATTTTCATTAGAGCCGAATATATTGTTGAACGTTTTTGAATGTTTTT
ATTTTTCTTCTTTTTCTCTTGGACGAATTCACTGCTGCGTTTTTCAACCC
CCTCCCTTGCCCCTTGCCCCTTATCAGGCGAGCCACCATTATTGTAACAA
CTCCCGAAAAGTGGGACGGGATCACTAGAGGCTGGCAGACCAGGGCTTAC
GTCAAGGAGACAGGCCTGGTGGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8860:15167..15790+

>mRNA_A-nodosum_M_contig8860.2.1 ID=mRNA_A-nodosum_M_contig8860.2.1|Name=mRNA_A-nodosum_M_contig8860.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=156bp|location=Sequence derived from alignment at A-nodosum_M_contig8860:15167..15790+ (Ascophyllum nodosum dioecious)
ATGGGTTTGGGGGTGTTGGAACTCACCGGAGACCACACCCCGAGTCTTGA
CGCCCTCAGGCGAGCCACCATTATTGTAACAACTCCCGAAAAGTGGGACG
GGATCACTAGAGGCTGGCAGACCAGGGCTTACGTCAAGGAGACAGGCCTG
GTGGTG
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