mRNA_A-nodosum_M_contig8860.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8860.1.1
Unique NamemRNA_A-nodosum_M_contig8860.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig8860.1.1 vs. uniprot
Match: D7FN81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 3.260e-20
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    1 LPALHIQAVVQPVTRGILRLTLRVLADFLWQARFCWGYFSAAFWIWVEDGDNEHVYHSESFLLAK 195
            LPALHI+  VQPVTRGILR+TL V A+FLWQ +F     + AF+IWVEDGDNEHVYHSE+FLL K
Sbjct: 1313 LPALHIETSVQPVTRGILRMTLTVSAEFLWQDKFHGA--TEAFYIWVEDGDNEHVYHSENFLLKK 1375          
BLAST of mRNA_A-nodosum_M_contig8860.1.1 vs. uniprot
Match: A0A8B6C1M2_MYTGA (Activating signal cointegrator complex subunit 3 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6C1M2_MYTGA)

HSP 1 Score: 70.9 bits (172), Expect = 7.760e-13
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 LPALHIQAVVQPVTRGILRLTLRVLADFLWQARFCWGYFSAAFWIWVEDGDNEHVYHSESFLLAK 195
            LPAL ++A +QP+TR +LR+ L +  +F W  +   G  S  FWIWVED DN H+YHSE FLL K
Sbjct:  149 LPALDLEASIQPITRTVLRVRLTITPEFKWDDKVH-GTSSEPFWIWVEDPDNNHIYHSEYFLLNK 212          
BLAST of mRNA_A-nodosum_M_contig8860.1.1 vs. uniprot
Match: A0A7S3UTV5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTV5_HETAK)

HSP 1 Score: 70.9 bits (172), Expect = 9.000e-13
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 LPALHIQAVVQPVTRGILRLTLRVLADFLWQARFCWGYFSAAFWIWVEDGDNEHVYHSESFLLAK 195
            LP L ++A VQP+TRGILR+TLRV A+F W  R  W      +WIW+ED + E +YH ESFLL K
Sbjct:   19 LPHLELEAAVQPITRGILRVTLRVRANFRWSDR--WHGAVEPWWIWMEDYNQETIYHHESFLLHK 81          
BLAST of mRNA_A-nodosum_M_contig8860.1.1 vs. uniprot
Match: A0A8B6FJW2_MYTGA (Activating signal cointegrator complex subunit 3 n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6FJW2_MYTGA)

HSP 1 Score: 70.9 bits (172), Expect = 9.120e-13
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 LPALHIQAVVQPVTRGILRLTLRVLADFLWQARFCWGYFSAAFWIWVEDGDNEHVYHSESFLLAK 195
            LPAL ++A +QP+TR +LR+ L +  +F W  +   G  S  FWIWVED DN H+YHSE FLL K
Sbjct: 1164 LPALDLEASIQPITRTVLRVRLTITPEFKWDDKVH-GTSSEPFWIWVEDPDNNHIYHSEYFLLNK 1227          
BLAST of mRNA_A-nodosum_M_contig8860.1.1 vs. uniprot
Match: A0A7R9U1M1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1M1_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.250e-12
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 LPALHIQAVVQPVTRGILRLTLRVLADFLWQARFCWGYFSAAFWIWVEDGDNEHVYHSESFLLAK 195
            LP L+++A VQP+TRG++RLTLRV ADF W  R+     S  + IWVEDGD E +YH+E + L +
Sbjct: 1150 LPHLYMEASVQPITRGVIRLTLRVAADFEWSDRYHGS--SEPYLIWVEDGDTERLYHTEPYYLLR 1212          
BLAST of mRNA_A-nodosum_M_contig8860.1.1 vs. uniprot
Match: A0A7M7T3G5_STRPU (Uncharacterized protein n=4 Tax=Echinacea TaxID=7674 RepID=A0A7M7T3G5_STRPU)

HSP 1 Score: 70.1 bits (170), Expect = 1.710e-12
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 LPALHIQAVVQPVTRGILRLTLRVLADFLWQARFCWGYFSAAFWIWVEDGDNEHVYHSESFLLAK 195
            LPA+ + A +QP+TR +LR+ L +  DF W  R   G  S ++WIWVED +N H+YHSE FLL K
Sbjct: 1191 LPAIRLDASIQPITRTVLRVRLTITPDFTWNDRVH-GTGSESWWIWVEDPENNHIYHSEYFLLQK 1254          
BLAST of mRNA_A-nodosum_M_contig8860.1.1 vs. uniprot
Match: A0A7S1Y115_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y115_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.320e-12
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 LPALHIQAVVQPVTRGILRLTLRVLADFLWQARFCWGYFSAAFWIWVEDGDNEHVYHSESFLLAK 195
            LP L+++A  QP+TRG++R+TLRV ADF W  R        ++ IWVEDGD E +YHSE+F L K
Sbjct:  908 LPHLYMEARTQPITRGVIRMTLRVAADFTWADRHHGS--QESYLIWVEDGDTERLYHSETFTLYK 970          
BLAST of mRNA_A-nodosum_M_contig8860.1.1 vs. uniprot
Match: UPI001EE594A0 (LOW QUALITY PROTEIN: activating signal cointegrator 1 complex subunit 3-like n=4 Tax=Haliotis TaxID=6452 RepID=UPI001EE594A0)

HSP 1 Score: 69.7 bits (169), Expect = 2.340e-12
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 LPALHIQAVVQPVTRGILRLTLRVLADFLWQARFCWGYFSAAFWIWVEDGDNEHVYHSESFLLAK 195
            +PAL + A +QP+TR +LR+ L + ADF W  +   G  +  FW+WVED DN H+YHS+ FLL K
Sbjct: 1176 IPALILDASIQPITRTVLRVRLTITADFSWDDKVH-GSVTEPFWVWVEDPDNNHIYHSDYFLLHK 1239          
BLAST of mRNA_A-nodosum_M_contig8860.1.1 vs. uniprot
Match: A0A2G8L8R2_STIJA (Putative activating signal cointegrator 1 complex subunit 3 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L8R2_STIJA)

HSP 1 Score: 69.3 bits (168), Expect = 3.170e-12
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 LPALHIQAVVQPVTRGILRLTLRVLADFLWQARFCWGYFSAAFWIWVEDGDNEHVYHSESFLLAK 195
            LPA+ ++A +QP+TR +++++L +  DF W  R   G  S ++WIWVED +N H+YHSE F+L K
Sbjct:  129 LPAIELEATLQPITRTVMKVSLTITPDFKWNDRVH-GNVSESWWIWVEDPENNHIYHSEYFILQK 192          
BLAST of mRNA_A-nodosum_M_contig8860.1.1 vs. uniprot
Match: UPI001EE5E0DB (LOW QUALITY PROTEIN: activating signal cointegrator 1 complex subunit 3-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5E0DB)

HSP 1 Score: 69.3 bits (168), Expect = 3.180e-12
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 LPALHIQAVVQPVTRGILRLTLRVLADFLWQARFCWGYFSAAFWIWVEDGDNEHVYHSESFLLAK 195
            +PAL + A +QP+TR +LR+ L + ADF W  +   G  +  FW+WVED DN H+YHS+ FLL K
Sbjct: 1176 IPALILDASIQPITRTVLRVRLTITADFSWDDKVH-GSSTEPFWVWVEDPDNNHIYHSDYFLLHK 1239          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8860.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN81_ECTSI3.260e-2070.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8B6C1M2_MYTGA7.760e-1352.31Activating signal cointegrator complex subunit 3 n... [more]
A0A7S3UTV5_HETAK9.000e-1355.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8B6FJW2_MYTGA9.120e-1352.31Activating signal cointegrator complex subunit 3 n... [more]
A0A7R9U1M1_9STRA1.250e-1252.31Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7M7T3G5_STRPU1.710e-1250.77Uncharacterized protein n=4 Tax=Echinacea TaxID=76... [more]
A0A7S1Y115_9STRA2.320e-1252.31Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
UPI001EE594A02.340e-1249.23LOW QUALITY PROTEIN: activating signal cointegrato... [more]
A0A2G8L8R2_STIJA3.170e-1246.15Putative activating signal cointegrator 1 complex ... [more]
UPI001EE5E0DB3.180e-1249.23LOW QUALITY PROTEIN: activating signal cointegrato... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8860contigA-nodosum_M_contig8860:8830..9252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FN81
PFAMsDEAD,Helicase_C,Sec63
Model size195
Max annot lvl2759|Eukaryota
KEGG koko:K12854,ko:K18663
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.34e-21
EggNOG OGsCOG1204@1|root,KOG0952@2759|Eukaryota
EC3.6.4.12,3.6.4.13
Descriptionhelicase activity
Cds size195
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870300.6809142-CDS-A-nodosum_M_contig8860:8829..89521680870300.6809142-CDS-A-nodosum_M_contig8860:8829..8952Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8860 8830..8952 +
1680870300.6940525-CDS-A-nodosum_M_contig8860:9180..92521680870300.6940525-CDS-A-nodosum_M_contig8860:9180..9252Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8860 9181..9252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8860.1.1prot_A-nodosum_M_contig8860.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8860 8830..9252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8860.1.1

>prot_A-nodosum_M_contig8860.1.1 ID=prot_A-nodosum_M_contig8860.1.1|Name=mRNA_A-nodosum_M_contig8860.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=65bp
LPALHIQAVVQPVTRGILRLTLRVLADFLWQARFCWGYFSAAFWIWVEDG
DNEHVYHSESFLLAK
back to top

mRNA from alignment at A-nodosum_M_contig8860:8830..9252+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8860.1.1 ID=mRNA_A-nodosum_M_contig8860.1.1|Name=mRNA_A-nodosum_M_contig8860.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=423bp|location=Sequence derived from alignment at A-nodosum_M_contig8860:8830..9252+ (Ascophyllum nodosum dioecious)
CTGCCGGCTCTCCACATCCAAGCGGTGGTGCAGCCCGTGACTCGCGGTAT ACTCCGCCTCACGCTCAGGGTCTTGGCCGACTTCCTCTGGCAGGCGCGTT TTTGTTGGGGTTATTTTTCTGCCGTTGAAGGGGCTCGGCCTCATCCGTCG TTTTTTTAGGCAGTAGGTTCGGTTCAAATGATTTAGATTTAGTGTTTATC CGGAAGGTCTACGTTGGAGAGGCTCCGGCGACCGTCCCCGCTTCATTTCC GTCGCATGTGACGTTTCGTTTCGAAACCGCCACATTGTGGCTTACACTAG ACTCGTCTCGATTCTGTTGCTGTTCTCAGGACAAGTTTCACGGCGCGTCA GGCGTTTTGGATATGGGTGGAGGACGGGGACAACGAGCACGTCTACCACT CTGAGAGCTTTCTCCTCGCCAAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig8860:8830..9252+

>mRNA_A-nodosum_M_contig8860.1.1 ID=mRNA_A-nodosum_M_contig8860.1.1|Name=mRNA_A-nodosum_M_contig8860.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=195bp|location=Sequence derived from alignment at A-nodosum_M_contig8860:8830..9252+ (Ascophyllum nodosum dioecious)
CTGCCGGCTCTCCACATCCAAGCGGTGGTGCAGCCCGTGACTCGCGGTAT
ACTCCGCCTCACGCTCAGGGTCTTGGCCGACTTCCTCTGGCAGGCGCGTT
TTTGTTGGGGTTATTTTTCTGCCGCGTTTTGGATATGGGTGGAGGACGGG
GACAACGAGCACGTCTACCACTCTGAGAGCTTTCTCCTCGCCAAG
back to top