mRNA_A-nodosum_M_contig8854.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8854.4.1
Unique NamemRNA_A-nodosum_M_contig8854.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8854.4.1 vs. uniprot
Match: D7G3X5_ECTSI (VWFD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X5_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 4.270e-17
Identity = 43/85 (50.59%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:   31 CGPALTITLSWSEVESDLDLFVTEPGGEVVSFANMVGDVGFLDMDVRSGPGIETYTVFRGLDPDMVGVIGTYEFEARRFAGPTET 285
            C P+LTITL W+   SD+DL+V EPGGEVV F+N  GDVGFLD D   G G E Y +   LDP    V+G YE   + ++G   T
Sbjct:  437 CVPSLTITLEWTGETSDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAAT 521
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BLAST of mRNA_A-nodosum_M_contig8854.4.1 vs. uniprot
Match: D7G5D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D6_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 6.770e-17
Identity = 43/85 (50.59%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:   31 CGPALTITLSWSEVESDLDLFVTEPGGEVVSFANMVGDVGFLDMDVRSGPGIETYTVFRGLDPDMVGVIGTYEFEARRFAGPTET 285
            C P+LTITL W+   SD+DL+V EPGGEVV F+N  GDVGFLD D   G G E Y +   LDP    V+G YE   + ++G   T
Sbjct:  311 CVPSLTITLEWTGEISDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAAT 395
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BLAST of mRNA_A-nodosum_M_contig8854.4.1 vs. uniprot
Match: A0A5D0SQN8_9BACT (VWA domain-containing protein n=1 Tax=Kosmotoga sp. TaxID=1955248 RepID=A0A5D0SQN8_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 1.440e-5
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 1 
Query:   37 PALTITLSWSEVESDLDLFVTEPGGEVVSFANMVG-DVGFLDMDVRSGPG----IETYTVFRGLD---PDMVGVIGTYEFEARRFAGP 276
            PAL +TLSW+ + +DLDLF+ EP G+V+S+ N    D G+L  D R        +E Y +  G D   PD    I  + F+++++  P
Sbjct: 1381 PALRVTLSWTAMGADLDLFIKEPNGDVISYKNRSSSDGGYLTNDERIYQNELHKVEEYILRYGEDYIPPDGKYEIKVHYFDSKQYGEP 1468
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BLAST of mRNA_A-nodosum_M_contig8854.4.1 vs. uniprot
Match: C5CEE7_KOSOT (PEGA domain protein n=2 Tax=Kosmotoga TaxID=651456 RepID=C5CEE7_KOSOT)

HSP 1 Score: 51.2 bits (121), Expect = 2.690e-5
Identity = 31/80 (38.75%), Postives = 42/80 (52.50%), Query Frame = 1 
Query:   40 ALTITLSWSEVESDLDLFVTEPGGEVVSFANMVGDVGFLDMDVRSGPG----IETYTVFRGLDPDMVGVIGTYEFEARRF 267
            ALT+ LSW   ++DLDL+V EPG  +V FAN   + G L MD R   G    +E Y +  G   + V   GTY+     +
Sbjct: 1394 ALTVELSWDNEDADLDLYVYEPGENIVYFANRGSECGNLTMDEREYIGGKQKVERYVLSYG--KNKVPAEGTYKIRVHYY 1471
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BLAST of mRNA_A-nodosum_M_contig8854.4.1 vs. uniprot
Match: A0A7K3ZNP3_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A7K3ZNP3_9ARCH)

HSP 1 Score: 49.7 bits (117), Expect = 9.070e-5
Identity = 30/87 (34.48%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:   40 ALTITLSWSEVESDLDLFVTEPG--GEVVSFANMVGDVG--FLDMDVRSGPGIETYTVFRGLD-PDMVGVIGTYEFEARRFAGPTET 285
            A+T+TL+W + ESD+DL V EPG  G  + ++N   D    +LD+D  +G G E Y    G   P    + GTY+   + +A  +++
Sbjct:  590 AMTVTLTWDQGESDVDLHVQEPGTEGRHIYYSNKGYDTAKPYLDLDNTAGYGPEHYYAVYGSSLPGAGNLYGTYQIRVQYYADHSDS 676
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8854.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G3X5_ECTSI4.270e-1750.59VWFD domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G5D6_ECTSI6.770e-1750.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5D0SQN8_9BACT1.440e-536.36VWA domain-containing protein n=1 Tax=Kosmotoga sp... [more]
C5CEE7_KOSOT2.690e-538.75PEGA domain protein n=2 Tax=Kosmotoga TaxID=651456... [more]
A0A7K3ZNP3_9ARCH9.070e-534.48Uncharacterized protein n=1 Tax=Candidatus Bathyar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8854contigA-nodosum_M_contig8854:16341..16855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3X5
PFAMsAMOP,SRCR,VWD,WSC
Model size292
Max annot lvl2759|Eukaryota
KEGG koko:K22017
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.01e-18
EggNOG OGsKOG4291@1|root,KOG4291@2759|Eukaryota
DescriptionSushi, nidogen and EGF-like
Cds size291
COG categoryKLT
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870299.5555372-CDS-A-nodosum_M_contig8854:16340..164901680870299.5555372-CDS-A-nodosum_M_contig8854:16340..16490Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8854 16341..16490 -
1680870299.567651-CDS-A-nodosum_M_contig8854:16714..168551680870299.567651-CDS-A-nodosum_M_contig8854:16714..16855Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8854 16715..16855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8854.4.1prot_A-nodosum_M_contig8854.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8854 16341..16855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8854.4.1

>prot_A-nodosum_M_contig8854.4.1 ID=prot_A-nodosum_M_contig8854.4.1|Name=mRNA_A-nodosum_M_contig8854.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=97bp
MSFVGDIEGPCGPALTITLSWSEVESDLDLFVTEPGGEVVSFANMVGDVG
FLDMDVRSGPGIETYTVFRGLDPDMVGVIGTYEFEARRFAGPTETVW
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mRNA from alignment at A-nodosum_M_contig8854:16341..16855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8854.4.1 ID=mRNA_A-nodosum_M_contig8854.4.1|Name=mRNA_A-nodosum_M_contig8854.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=515bp|location=Sequence derived from alignment at A-nodosum_M_contig8854:16341..16855- (Ascophyllum nodosum dioecious)
ATGTCATTTGTCGGCGACATAGAGGGACCATGCGGGCCTGCGCTCACCAT
CACCTTGTCATGGTCGGAGGTGGAGAGCGATCTCGATCTCTTCGTGACGG
AGCCGGGTGGCGAGGTGGTCAGCTTCGCGAATATGGTTGGGGTAAGTGCA
CACTTAAACGGCGCTTGTTTGAGGCATGTTCATAGTTTGTAGAGGTAACT
ATCGCTTTTTGGTTCTCTCGGAGAAGAAGTAATGGGTAGAATGCTCAGGT
TGGTGACTCAAATATGAAGACTTAATGACCTTAAATGCCCCCCACAATCG
ACGCTGGCCTCTCATTTTCGCTTTGTCTTCTCACACACTCCATCTTGATC
ATCCTCTGCCAAAAGGACGTTGGCTTCCTCGACATGGACGTCAGATCGGG
TCCTGGTATCGAAACCTACACCGTCTTTAGGGGGCTTGACCCTGATATGG
TCGGTGTAATCGGAACCTACGAGTTCGAAGCAAGGCGCTTTGCCGGTCCC
ACGGAGACGGTGTGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8854:16341..16855-

>mRNA_A-nodosum_M_contig8854.4.1 ID=mRNA_A-nodosum_M_contig8854.4.1|Name=mRNA_A-nodosum_M_contig8854.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=291bp|location=Sequence derived from alignment at A-nodosum_M_contig8854:16341..16855- (Ascophyllum nodosum dioecious)
ATGTCATTTGTCGGCGACATAGAGGGACCATGCGGGCCTGCGCTCACCAT
CACCTTGTCATGGTCGGAGGTGGAGAGCGATCTCGATCTCTTCGTGACGG
AGCCGGGTGGCGAGGTGGTCAGCTTCGCGAATATGGTTGGGGACGTTGGC
TTCCTCGACATGGACGTCAGATCGGGTCCTGGTATCGAAACCTACACCGT
CTTTAGGGGGCTTGACCCTGATATGGTCGGTGTAATCGGAACCTACGAGT
TCGAAGCAAGGCGCTTTGCCGGTCCCACGGAGACGGTGTGG
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