mRNA_A-nodosum_M_contig885.3.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig885.3.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE) HSP 1 Score: 254 bits (650), Expect = 5.010e-72 Identity = 137/237 (57.81%), Postives = 170/237 (71.73%), Query Frame = -2
Query: 13 DGQLEATRRL*TGQHLQRLKEGEDHRGRSYARVCRIGSIRTPLAIACEHGCLVWQTDVVVAFLQSLIDKNVFVESAPGHDPRDSKTGEVMVYKLQRSLYGLAQSPVLWYDTTDGVLVVIGSRPTQSDPCMYTHGSGVTLVILTLYVDDILITRKDPTLVEQKKKKLKERFEMTDMGEVSRILGMGFTGDYDEGTLAIAHTAYVDNILERFGMQDANAAHTPGYGPELSAEQPEDKLL 723
DG+ +A RL G H Q + G+D+ GRSYA VCRIGSIR AI C + ++Q DVV AFL +L D+ V+V APG ++S TGE MVYKL+RSLYGL+QSP LW DT D L V G + TQSDPC+Y + SG +VILT+YVDDILIT D LV+QKKK+L +RFEMTDMGEV RILG+ DY++GTLAI+ YV+ LERFGMQ+AN T GYG E+S QP+D++L
Sbjct: 36 DGRFKA--RLVVGGHRQ--EPGQDY-GRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQIL 267
BLAST of mRNA_A-nodosum_M_contig885.3.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE) HSP 1 Score: 259 bits (661), Expect = 1.630e-71 Identity = 137/237 (57.81%), Postives = 173/237 (73.00%), Query Frame = -2
Query: 13 DGQLEATRRL*TGQHLQRLKEGEDHRGRSYARVCRIGSIRTPLAIACEHGCLVWQTDVVVAFLQSLIDKNVFVESAPGHDPRDSKTGEVMVYKLQRSLYGLAQSPVLWYDTTDGVLVVIGSRPTQSDPCMYTHGSGVTLVILTLYVDDILITRKDPTLVEQKKKKLKERFEMTDMGEVSRILGMGFTGDYDEGTLAIAHTAYVDNILERFGMQDANAAHTPGYGPELSAEQPEDKLL 723
DG+ +A RL G H Q + G+D+ GRSYA VCRIGSIR AI C + ++Q DVV AFL +L D++V+V APG ++S TGE MVYKL+RSLYGL+QS LW DT D L V+G + TQSDPC+Y + SG +VILT+YVDDILIT D LV+QKKK+L +RFEMTDMGEV RILG+ DY++GTLAI+ YV+ +LERFGMQ+AN TPGYG E+S QP+D++L
Sbjct: 244 DGRFKA--RLVVGGHRQ--EPGQDY-GRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQIL 475
BLAST of mRNA_A-nodosum_M_contig885.3.1 vs. uniprot
Match: A0A6H5KTY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY2_9PHAE) HSP 1 Score: 254 bits (650), Expect = 1.900e-71 Identity = 136/237 (57.38%), Postives = 171/237 (72.15%), Query Frame = -2
Query: 13 DGQLEATRRL*TGQHLQRLKEGEDHRGRSYARVCRIGSIRTPLAIACEHGCLVWQTDVVVAFLQSLIDKNVFVESAPGHDPRDSKTGEVMVYKLQRSLYGLAQSPVLWYDTTDGVLVVIGSRPTQSDPCMYTHGSGVTLVILTLYVDDILITRKDPTLVEQKKKKLKERFEMTDMGEVSRILGMGFTGDYDEGTLAIAHTAYVDNILERFGMQDANAAHTPGYGPELSAEQPEDKLL 723
DG+ +A RL G H Q + G+D+ GRSYA VCRIGSIR AI C + ++Q DVV AFL +L D++V+V APG ++S TGE MVYKL+RSLYGL+QSP LW DT D L V G + TQSDPC+Y + SG ++VILT+YVDDILIT D LV+QKKK+L +RFEMTDMGEV RILG+ DY++ TLAI+ YV+ +LERFGMQ+AN T GYG E+S QP+D+ L
Sbjct: 244 DGRFKA--RLVVGGHRQ--EPGQDY-GRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQRTLAISQEHYVNALLERFGMQEANPVSTSGYGAEISTNQPQDQFL 475
BLAST of mRNA_A-nodosum_M_contig885.3.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE) HSP 1 Score: 261 bits (668), Expect = 2.600e-71 Identity = 138/237 (58.23%), Postives = 173/237 (73.00%), Query Frame = -2
Query: 13 DGQLEATRRL*TGQHLQRLKEGEDHRGRSYARVCRIGSIRTPLAIACEHGCLVWQTDVVVAFLQSLIDKNVFVESAPGHDPRDSKTGEVMVYKLQRSLYGLAQSPVLWYDTTDGVLVVIGSRPTQSDPCMYTHGSGVTLVILTLYVDDILITRKDPTLVEQKKKKLKERFEMTDMGEVSRILGMGFTGDYDEGTLAIAHTAYVDNILERFGMQDANAAHTPGYGPELSAEQPEDKLL 723
DG+ +A RL G H Q + G+D+ GRSYA VCRIGSIR AI C + ++Q DVV AFL +L D++V+V APG ++S TGE MVYKL+RSLYGL+QSP LW DT D L V G + TQSDPC+Y + SG +VILT+YVDDILIT D LV+QKKK+L +RFEMTDMGEV RILG+ DY++GTLAI+ YV+ +LERFGMQ+AN TPGYG E+S QP+D++L
Sbjct: 400 DGRFKA--RLVVGGHRQ--EPGQDY-GRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQIL 631
BLAST of mRNA_A-nodosum_M_contig885.3.1 vs. uniprot
Match: A0A6H5KG29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG29_9PHAE) HSP 1 Score: 244 bits (622), Expect = 4.850e-70 Identity = 132/239 (55.23%), Postives = 165/239 (69.04%), Query Frame = -2
Query: 13 RL*TGQHLQRLKEGEDHRGRSYARVCRIGSIRTPLAIACEHGCLVWQTDVVVAFLQSLIDKNVFVESAPG----------HDPRDSKTGEVMVYKLQRSLYGLAQSPVLWYDTTDGVLVVIGSRPTQSDPCMYTHGSGVTLVILTLYVDDILITRKDPTLVEQKKKKLKERFEMTDMGEVSRILGMGFTGDYDEGTLAIAHTAYVDNILERFGMQDANAAHTPGYGPELSAEQPEDKLL 699
RL G H Q + G+D+ G SYA VCRIGSIR A C + ++Q DVV AFL +L D++V+V APG ++S TGE MVYKL+RSLYGL+QSP L DT D L V G + TQSDPC+Y + SG +VILT+YVDDILIT D LV+QKKK+L +RFEMTDMGEV RILG+ DY++GTLAI+ YV+ +LERFGMQ+AN TPGYG E+S QP+D++L
Sbjct: 42 RLVVGGHRQ--EPGQDY-GHSYAPVCRIGSIRMTCATGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTXXXXXXXXXXSAKNSATGEPMVYKLERSLYGLSQSPALLNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQIL 277
BLAST of mRNA_A-nodosum_M_contig885.3.1 vs. uniprot
Match: A0A6H5K7T8_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T8_9PHAE) HSP 1 Score: 254 bits (649), Expect = 6.230e-69 Identity = 134/237 (56.54%), Postives = 171/237 (72.15%), Query Frame = -2
Query: 13 DGQLEATRRL*TGQHLQRLKEGEDHRGRSYARVCRIGSIRTPLAIACEHGCLVWQTDVVVAFLQSLIDKNVFVESAPGHDPRDSKTGEVMVYKLQRSLYGLAQSPVLWYDTTDGVLVVIGSRPTQSDPCMYTHGSGVTLVILTLYVDDILITRKDPTLVEQKKKKLKERFEMTDMGEVSRILGMGFTGDYDEGTLAIAHTAYVDNILERFGMQDANAAHTPGYGPELSAEQPEDKLL 723
DG+ +A RL G H Q + G+D+ GRSYA VCRIGSIR AI C + ++Q DVV AFL +L D++V+V APG ++ TGE M+Y+L+RSLYGL+Q P LW DT D L V G + TQSDPC+Y + SG +VILT+YVDDILIT D LV+QKKK+L +RFEMTDMGEV RILG+ DY++GTLAI+ YV+ +LERFGMQ+AN TPGYG E+S QP+D++L
Sbjct: 443 DGRFKA--RLVVGGHRQ--EPGQDY-GRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNYATGEPMMYELERSLYGLSQYPALWKDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQIL 674
BLAST of mRNA_A-nodosum_M_contig885.3.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE) HSP 1 Score: 254 bits (650), Expect = 7.990e-69 Identity = 127/190 (66.84%), Postives = 148/190 (77.89%), Query Frame = -2
Query: 76 GRSYARVCRIGSIRTPLAIACEHGCLVWQTDVVVAFLQSLIDKNVFVESAPGHDPRDSKTGEVMVYKLQRSLYGLAQSPVLWYDTTDGVLVVIGSRPTQSDPCMYTHGSGVTLVILTLYVDDILITRKDPTLVEQKKKKLKERFEMTDMGEVSRILGMGFTGDYDEGTLAIAHTAYVDNILERFGMQDAN 645
GR YARVCRIGS+R AIACE G VWQ DV VAFLQ IDK+V+V+ APG D +D TG +MVYKL+RSLYGLAQSPVLWYDT D VLVVIG RPTQSDPC+Y HGSG TLVILTLYV+DILI+ KDP LV KK+L++RFE+TD+GEV ILGM T Y+ GTL ++ YV +ILE GM++ N
Sbjct: 459 GRRYARVCRIGSVRIFFAIACERGWPVWQMDVAVAFLQPTIDKDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCN 648
BLAST of mRNA_A-nodosum_M_contig885.3.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE) HSP 1 Score: 243 bits (620), Expect = 3.710e-67 Identity = 132/237 (55.70%), Postives = 168/237 (70.89%), Query Frame = -2
Query: 13 DGQLEATRRL*TGQHLQRLKEGEDHRGRSYARVCRIGSIRTPLAIACEHGCLVWQTDVVVAFLQSLIDKNVFVESAPGHDPRDSKTGEVMVYKLQRSLYGLAQSPVLWYDTTDGVLVVIGSRPTQSDPCMYTHGSGVTLVILTLYVDDILITRKDPTLVEQKKKKLKERFEMTDMGEVSRILGMGFTGDYDEGTLAIAHTAYVDNILERFGMQDANAAHTPGYGPELSAEQPEDKLL 723
DG+ +A L G H Q + G+D+ G SYA VCRIGSIR I C + ++Q DVVVAFL +L D++V+V APG ++S TGE MVYKL+RSLYGL+QSP LW DT + L V G + TQ DPC+Y + SG +VILT+YVDDILIT D LV+QKK+ L +RFEMTDMGEV RILG+ DY++GTLAI+ YV+ +LERFGMQ+AN T GYG E+S QP+D++L
Sbjct: 137 DGRFKA--HLVVGGHRQ--EPGQDY-GSSYAPVCRIGSIRMTCTIGCHNNWPIYQLDVVVAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITGGDQQLVDQKKE-LTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQDQIL 367
BLAST of mRNA_A-nodosum_M_contig885.3.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE) HSP 1 Score: 249 bits (637), Expect = 4.120e-67 Identity = 132/228 (57.89%), Postives = 165/228 (72.37%), Query Frame = -2
Query: 40 DGQLEATRRL*TGQHLQRLKEGEDHRGRSYARVCRIGSIRTPLAIACEHGCLVWQTDVVVAFLQSLIDKNVFVESAPGHDPRDSKTGEVMVYKLQRSLYGLAQSPVLWYDTTDGVLVVIGSRPTQSDPCMYTHGSGVTLVILTLYVDDILITRKDPTLVEQKKKKLKERFEMTDMGEVSRILGMGFTGDYDEGTLAIAHTAYVDNILERFGMQDANAAHTPGYGPELS 723
DG+ +A RL G H Q + G+D+ GRSYA VCRIGSIR AI C + ++Q DVV AFL +L D++V+V APG ++S TGE MVYKL+RSLYGL+QSP LW DT D + G + TQSDPC+Y + SG +VILT+YVDDILIT D LV+QKKK+L +RFEMTDMGEV RILG+ DY++GTLAI+ YV+ +LERFGMQ+AN TPGYG E+S
Sbjct: 625 DGRFKA--RLVVGGHRQ--EPGQDY-GRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESITAFGWKRTQSDPCVYAYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEIS 847
BLAST of mRNA_A-nodosum_M_contig885.3.1 vs. uniprot
Match: A0A6H5KS50_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS50_9PHAE) HSP 1 Score: 243 bits (619), Expect = 7.380e-66 Identity = 135/238 (56.72%), Postives = 166/238 (69.75%), Query Frame = -2
Query: 13 DGQLEATRRL*TGQHLQRLKEGEDHRGRSYARVCRIGSIRTPLAIACEHGCLVWQTDVVVAFLQSLIDKNVFVESAPGHDPRDSKTGEVMVYKLQRSLYGLAQSPVLWYDTTDGVLVVIGSRPTQSDPCMYTH-GSGVTLVILTLYVDDILITRKDPTLVEQKKKKLKERFEMTDMGEVSRILGMGFTGDYDEGTLAIAHTAYVDNILERFGMQDANAAHTPGYGPELSAEQPEDKLL 723
DG+ +A RL G H Q G+D+ GRSYA VCRIGSIR AI C + ++Q DVV AFL +L D++V+V APG ++S TGE MVYKL+RSLYGL+QSP LW DT D L V G + TQSDPC+Y SG T+VILT+ VDDILIT D LV+Q KK+L RFEMTDMGEV RILG+ DY++GTLAI+ V+ +LERFGMQ+AN T GYG E+S QP+D+ L
Sbjct: 343 DGRFKA--RLVVGGHRQ--APGQDY-GRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVCLTSGNTIVILTVCVDDILITGGDQQLVDQPKKELTNRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHNVNTLLERFGMQEANPVSTSGYGAEISTNQPQDQFL 575 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig885.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig885.3.1 >prot_A-nodosum_M_contig885.3.1 ID=prot_A-nodosum_M_contig885.3.1|Name=mRNA_A-nodosum_M_contig885.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=82bp MMSSEHIPWSRGFCLSGMIMPPMVRCGLPISSANLTPFFRSAVGTKMLRPback to top mRNA from alignment at A-nodosum_M_contig885:59405..62058- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig885.3.1 ID=mRNA_A-nodosum_M_contig885.3.1|Name=mRNA_A-nodosum_M_contig885.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2654bp|location=Sequence derived from alignment at A-nodosum_M_contig885:59405..62058- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig885:59405..62058- >mRNA_A-nodosum_M_contig885.3.1 ID=mRNA_A-nodosum_M_contig885.3.1|Name=mRNA_A-nodosum_M_contig885.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at A-nodosum_M_contig885:59405..62058- (Ascophyllum nodosum dioecious)back to top |