mRNA_A-nodosum_M_contig883.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig883.5.1
Unique NamemRNA_A-nodosum_M_contig883.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig883.5.1 vs. uniprot
Match: A0A6H5KQ16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ16_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.290e-24
Identity = 54/131 (41.22%), Postives = 75/131 (57.25%), Query Frame = 3 
Query:  177 LSVDAAGQMYDQTNEFVYLGGDVNHSSDLSIEVDRRIRNVWCSFRKYTHGLHDRTSAPLELKTRMLKAEVLDTMLYGCVSWSPRACHYDTLWRGGLVHFARNKQALRNIPYTVYHEAKSVRGHPDAINRDE 569
            L+++AAGQ Y QT EF YLGG VN   DL+ E++ R R  W   R+Y   L DR  AP  LK R+L+AE ++ +LYGC++WSP + HY TL     +H   ++  LR + Y    +     GH   + R E
Sbjct:   63 LTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRS---IH---HRLLLRVVGYKRKKDTYRQLGHAQTLKRVE 187
[Close]
BLAST of mRNA_A-nodosum_M_contig883.5.1 vs. uniprot
Match: A0A6H5JYZ4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYZ4_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 9.510e-24
Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = 3 
Query:  174 VLSVDAAGQMYDQTNEFVYLGGDVNHSSDLSIEVDRRIRNVWCSFRKYTHGLHDRTSAPLELKTRMLKAEVLDTMLYGCVSWSPRACHYDTLWRGGLVHFARNKQALRNI 503
            VL+++AAGQ Y QT EF YLGG VN   DL+ E++ R +  W   ++Y   L DR  AP  LK R+L+AE ++ +LYGC++WSPR  HY      G++    ++  LR I
Sbjct:   60 VLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHY------GMLQTTHHRLLLRVI 163
[Close]
BLAST of mRNA_A-nodosum_M_contig883.5.1 vs. uniprot
Match: A0A6H5K038_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K038_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.220e-23
Identity = 46/91 (50.55%), Postives = 61/91 (67.03%), Query Frame = 3 
Query:  177 LSVDAAGQMYDQTNEFVYLGGDVNHSSDLSIEVDRRIRNVWCSFRKYTHGLHDRTSAPLELKTRMLKAEVLDTMLYGCVSWSPRACHYDTL 449
            L+++AAGQ Y QT EF YLGG VN   DL+ E++ R R  W   R+Y   L DR  AP  LK R+L+AE ++ +LYGC++WSP + HY TL
Sbjct:   63 LTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTL 153
[Close]
BLAST of mRNA_A-nodosum_M_contig883.5.1 vs. uniprot
Match: A0A6H5KXX8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX8_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.490e-23
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 3 
Query:  174 VLSVDAAGQMYDQTNEFVYLGGDVNHSSDLSIEVDRRIRNVWCSFRKYTHGLHDRTSAPLELKTRMLKAEVLDTMLYGCVSWSPRACHYDTL 449
            VL+++AAGQ Y QT EF YLGG VN   DL+ E++ R +  W   ++Y   L DR  AP  LK R+L+AE ++ +LYGC++WSPR  HY  L
Sbjct:   70 VLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGML 161
[Close]
BLAST of mRNA_A-nodosum_M_contig883.5.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.800e-23
Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = 3 
Query:  174 VLSVDAAGQMYDQTNEFVYLGGDVNHSSDLSIEVDRRIRNVWCSFRKYTHGLHDRTSAPLELKTRMLKAEVLDTMLYGCVSWSPRACHYDTLWRGGLVHFARNKQALRNIPY 509
            VL+++AAGQ Y QT EF YLGG VN   DL+ E++ R +  W   ++Y   L DR  AP  LK R+L+AE ++ +LYGC++WSPR  HY      G++    ++  LR I Y
Sbjct:   41 VLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHY------GMLQTTHHRLLLRVIGY 146
[Close]
BLAST of mRNA_A-nodosum_M_contig883.5.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.060e-23
Identity = 50/117 (42.74%), Postives = 69/117 (58.97%), Query Frame = 3 
Query:  177 LSVDAAGQMYDQTNEFVYLGGDVNHSSDLSIEVDRRIRNVWCSFRKYTHGLHDRTSAPLELKTRMLKAEVLDTMLYGCVSWSPRACHYDTLWRGG------LVHFARNKQALRNIPY 509
            L+++AAGQ Y QT EF YLGG VN   DL+ E++ R R  W   R+Y   L DR  AP  LK R+L+AE ++ +LYGC++WSP + HY TL          ++ + R K   R + Y
Sbjct:   63 LTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSY 179
[Close]
BLAST of mRNA_A-nodosum_M_contig883.5.1 vs. uniprot
Match: A0A6H5KPJ4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPJ4_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 3.910e-23
Identity = 50/112 (44.64%), Postives = 68/112 (60.71%), Query Frame = 3 
Query:  174 VLSVDAAGQMYDQTNEFVYLGGDVNHSSDLSIEVDRRIRNVWCSFRKYTHGLHDRTSAPLELKTRMLKAEVLDTMLYGCVSWSPRACHYDTLWRGGLVHFARNKQALRNIPY 509
            VL+++AAGQ Y QT EF YLGG VN   DL+ E++ R +  W   ++Y   L DR  AP  LK R+L+AE ++ +LYGC++WSPR  HY   W     H+   +  LR I Y
Sbjct:   60 VLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRGHY---WLLQTTHY---RLLLRVIGY 165
[Close]
BLAST of mRNA_A-nodosum_M_contig883.5.1 vs. uniprot
Match: A0A6H5LCI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCI9_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.050e-23
Identity = 50/117 (42.74%), Postives = 70/117 (59.83%), Query Frame = 3 
Query:  177 LSVDAAGQMYDQTNEFVYLGGDVNHSSDLSIEVDRRIRNVWCSFRKYTHGLHDRTSAPLELKTRMLKAEVLDTMLYGCVSWSPRACHYDTLWRGG------LVHFARNKQALRNIPY 509
            L+++AAGQ Y QT EF YLGG VN   DL+ E++ R R  W   R+Y   L DR +AP  LK R+L+AE ++ +LYGC++WSP + HY TL          ++ + R K   R + Y
Sbjct:   99 LTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGWELFDRPNAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSY 215
[Close]
BLAST of mRNA_A-nodosum_M_contig883.5.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 7.270e-23
Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = 3 
Query:  174 VLSVDAAGQMYDQTNEFVYLGGDVNHSSDLSIEVDRRIRNVWCSFRKYTHGLHDRTSAPLELKTRMLKAEVLDTMLYGCVSWSPRACHYDTLWRGGLVHFARNKQALRNIPY 509
            VL+++AAGQ Y QT EF YLGG VN   DL+ E++ R +  W   ++Y   L DR  AP  LK R+L+AE ++ +LYGC++WSPR  HY      G++    ++  LR I Y
Sbjct:   60 VLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHY------GMLQTTHHRLLLRVIGY 165
[Close]
BLAST of mRNA_A-nodosum_M_contig883.5.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 8.350e-23
Identity = 48/111 (43.24%), Postives = 68/111 (61.26%), Query Frame = 3 
Query:  177 LSVDAAGQMYDQTNEFVYLGGDVNHSSDLSIEVDRRIRNVWCSFRKYTHGLHDRTSAPLELKTRMLKAEVLDTMLYGCVSWSPRACHYDTLWRGGLVHFARNKQALRNIPY 509
            L+++AAGQ Y QT EF YLGG +N   DL+ E++ R +  W   R+Y   L DR  AP  LK R+L+AE ++ +LYGC++WSPR  HY      G++    ++  LR I Y
Sbjct:   93 LTIEAAGQRYAQTTEFRYLGGLINEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHY------GMLQTTHHRLLLRVIGY 197
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig883.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ16_9PHAE2.290e-2441.22Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JYZ4_9PHAE9.510e-2443.64Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K038_9PHAE1.220e-2350.55Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KXX8_9PHAE1.490e-2348.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JLH5_9PHAE1.800e-2343.75Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAH7_9PHAE2.060e-2342.74Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KPJ4_9PHAE3.910e-2344.64Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LCI9_9PHAE4.050e-2342.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS4_9PHAE7.270e-2343.75Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KLX9_9PHAE8.350e-2343.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig883contigA-nodosum_M_contig883:39015..39627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog13735.ENSPSIP00000001764
PFAMsRVT_1
Model size613
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.4e-05
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39URR@33154|Opisthokonta,3BNQ4@33208|Metazoa,3D5MM@33213|Bilateria,48JDG@7711|Chordata,49GEU@7742|Vertebrata,4CJJP@8459|Testudines
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size381
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870292.728676-UTR-A-nodosum_M_contig883:39014..390461680870292.728676-UTR-A-nodosum_M_contig883:39014..39046Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig883 39015..39046 -
1680870292.7548125-UTR-A-nodosum_M_contig883:39427..396271680870292.7548125-UTR-A-nodosum_M_contig883:39427..39627Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig883 39428..39627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870292.7408974-CDS-A-nodosum_M_contig883:39046..394271680870292.7408974-CDS-A-nodosum_M_contig883:39046..39427Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig883 39047..39427 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig883.5.1prot_A-nodosum_M_contig883.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig883 39047..39427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig883.5.1

>prot_A-nodosum_M_contig883.5.1 ID=prot_A-nodosum_M_contig883.5.1|Name=mRNA_A-nodosum_M_contig883.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=127bp
MYDQTNEFVYLGGDVNHSSDLSIEVDRRIRNVWCSFRKYTHGLHDRTSAP
LELKTRMLKAEVLDTMLYGCVSWSPRACHYDTLWRGGLVHFARNKQALRN
IPYTVYHEAKSVRGHPDAINRDESRE*
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mRNA from alignment at A-nodosum_M_contig883:39015..39627-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig883.5.1 ID=mRNA_A-nodosum_M_contig883.5.1|Name=mRNA_A-nodosum_M_contig883.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=613bp|location=Sequence derived from alignment at A-nodosum_M_contig883:39015..39627- (Ascophyllum nodosum dioecious)
GTTGAAGATGTCACCCGTTGGCCTTCGTACCTCTTTGTGACCACGTACCG
CATTAACAGCCGAGATTTTTACCGAGTATGGTTCAGGCCCGATCGGTTAA
TGTAAAATAATCCGGGCACACAGACACACACACACCTCCGTCTTGATTGA
CCTTGACCCGACCCGACCACAAAGTACTCAGCGTAGACGCAGCGGGCCAG
ATGTACGACCAAACGAACGAGTTCGTATACCTCGGGGGGGACGTCAACCA
CAGTTCCGACCTGTCCATCGAGGTCGATCGGCGCATACGCAACGTATGGT
GCAGCTTCCGGAAGTACACCCATGGTCTACACGACCGAACGAGCGCTCCC
CTCGAGCTCAAAACCCGGATGCTCAAAGCCGAGGTACTCGACACAATGCT
GTACGGCTGCGTCTCGTGGAGCCCGCGCGCGTGCCACTACGACACGCTGT
GGAGGGGGGGGCTGGTTCATTTCGCTCGTAACAAGCAAGCCTTACGCAAT
ATACCATATACCGTATACCACGAGGCGAAATCAGTGCGCGGCCACCCAGA
CGCGATAAATCGGGACGAGTCCCGTGAGTAAGCACCAGATTCAGCCTGAG
TATGGAGAGTGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig883:39015..39627-

>mRNA_A-nodosum_M_contig883.5.1 ID=mRNA_A-nodosum_M_contig883.5.1|Name=mRNA_A-nodosum_M_contig883.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=381bp|location=Sequence derived from alignment at A-nodosum_M_contig883:39015..39627- (Ascophyllum nodosum dioecious)
ATGTACGACCAAACGAACGAGTTCGTATACCTCGGGGGGGACGTCAACCA
CAGTTCCGACCTGTCCATCGAGGTCGATCGGCGCATACGCAACGTATGGT
GCAGCTTCCGGAAGTACACCCATGGTCTACACGACCGAACGAGCGCTCCC
CTCGAGCTCAAAACCCGGATGCTCAAAGCCGAGGTACTCGACACAATGCT
GTACGGCTGCGTCTCGTGGAGCCCGCGCGCGTGCCACTACGACACGCTGT
GGAGGGGGGGGCTGGTTCATTTCGCTCGTAACAAGCAAGCCTTACGCAAT
ATACCATATACCGTATACCACGAGGCGAAATCAGTGCGCGGCCACCCAGA
CGCGATAAATCGGGACGAGTCCCGTGAGTAA
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