mRNA_A-nodosum_M_contig883.32.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig883.32.1
Unique NamemRNA_A-nodosum_M_contig883.32.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig883.32.1 vs. uniprot
Match: A0A6H5JYZ4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYZ4_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.220e-22
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:   22 GQVYIYTS-FTYLGGTVTEMPNLSDEIDRRIRAGWMDFKRYKRELYDLPKASLLPLKARVVRSEVVEALLYGCVTWTPLKCHYAKLRTTNHRM 297
            GQ Y  T+ F YLGG V E  +L+ EI+ R +A W   KRY  EL+D P A    LKAR++++E VEALLYGC+TW+P + HY  L+TT+HR+
Sbjct:   67 GQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFR-LKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRL 158
[Close]
BLAST of mRNA_A-nodosum_M_contig883.32.1 vs. uniprot
Match: A0A6H5KXX8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX8_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.670e-22
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:   22 GQVYIYTS-FTYLGGTVTEMPNLSDEIDRRIRAGWMDFKRYKRELYDLPKASLLPLKARVVRSEVVEALLYGCVTWTPLKCHYAKLRTTNHRM 297
            GQ Y  T+ F YLGG V E  +L+ EI+ R +A W   KRY  EL+D P A    LKAR++++E VEALLYGC+TW+P + HY  L+TT+HR+
Sbjct:   77 GQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFR-LKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRL 168
[Close]
BLAST of mRNA_A-nodosum_M_contig883.32.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.690e-21
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:   22 GQVYIYTS-FTYLGGTVTEMPNLSDEIDRRIRAGWMDFKRYKRELYDLPKASLLPLKARVVRSEVVEALLYGCVTWTPLKCHYAKLRTTNHRM 297
            GQ Y  T+ F YLGG V E  +L+ EI+ R +A W   KRY  EL+D P A    LKAR++++E VEALLYGC+TW+P + HY  L+TT+HR+
Sbjct:   48 GQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFR-LKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRL 139
[Close]
BLAST of mRNA_A-nodosum_M_contig883.32.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.210e-20
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:   22 GQVYIYTS-FTYLGGTVTEMPNLSDEIDRRIRAGWMDFKRYKRELYDLPKASLLPLKARVVRSEVVEALLYGCVTWTPLKCHYAKLRTTNHRM 297
            GQ Y  T+ F YLGG V E  +L+ EI+ R +A W   KRY  EL+D P A    LKAR++++E VEALLYGC+TW+P + HY  L+TT+HR+
Sbjct:   67 GQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFR-LKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRL 158
[Close]
BLAST of mRNA_A-nodosum_M_contig883.32.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.970e-20
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:   22 GQVYIYTS-FTYLGGTVTEMPNLSDEIDRRIRAGWMDFKRYKRELYDLPKASLLPLKARVVRSEVVEALLYGCVTWTPLKCHYAKLRTTNHRM 297
            GQ Y  T+ F YLGG + E  +L+ EI+ R +A W   +RY  EL+D P A    LKAR++++E VEALLYGC+TW+P + HY  L+TT+HR+
Sbjct:   99 GQRYAQTTEFRYLGGLINEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFR-LKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRL 190
[Close]
BLAST of mRNA_A-nodosum_M_contig883.32.1 vs. uniprot
Match: A0A6H5K038_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K038_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.190e-20
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:   22 GQVYIYTS-FTYLGGTVTEMPNLSDEIDRRIRAGWMDFKRYKRELYDLPKASLLPLKARVVRSEVVEALLYGCVTWTPLKCHYAKLRTTNHRM 297
            GQ Y  T+ F YLGG V E  +L+ EI+ R R  W   +RY REL+D P+A    LK R++++E +EALLYGC+TW+PL  HY  LR+ +HR+
Sbjct:   69 GQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFR-LKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRL 160
[Close]
BLAST of mRNA_A-nodosum_M_contig883.32.1 vs. uniprot
Match: A0A6H5KPJ4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPJ4_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.630e-20
Identity = 47/93 (50.54%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:   22 GQVYIYTS-FTYLGGTVTEMPNLSDEIDRRIRAGWMDFKRYKRELYDLPKASLLPLKARVVRSEVVEALLYGCVTWTPLKCHYAKLRTTNHRM 297
            GQ Y  T+ F YLGG V E  +L+ EI+ R +A W   KRY  EL+D P A    LKAR++++E VEALLYGC+TW+P + HY  L+TT++R+
Sbjct:   67 GQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFR-LKARLLQAEAVEALLYGCMTWSPRRGHYWLLQTTHYRL 158
[Close]
BLAST of mRNA_A-nodosum_M_contig883.32.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.720e-20
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:   22 GQVYIYTS-FTYLGGTVTEMPNLSDEIDRRIRAGWMDFKRYKRELYDLPKASLLPLKARVVRSEVVEALLYGCVTWTPLKCHYAKLRTTNHRM 297
            GQ Y  T+ F YLGG V E  +L+ EI+ R +A W   KRY  EL+D P A    LKAR++++E VEALLYGC+TW+P + HY  L+TT+HR+
Sbjct:  518 GQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFR-LKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRL 609
[Close]
BLAST of mRNA_A-nodosum_M_contig883.32.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.780e-20
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:   22 GQVYIYTS-FTYLGGTVTEMPNLSDEIDRRIRAGWMDFKRYKRELYDLPKASLLPLKARVVRSEVVEALLYGCVTWTPLKCHYAKLRTTNHRM 297
            GQ Y  T+ F YLGG V E  +L+ EI+ R +A W   KRY  EL+D P A    LKAR++++E VEALLYGC+TW+P + HY  L+TT+HR+
Sbjct:  847 GQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFR-LKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRL 938
[Close]
BLAST of mRNA_A-nodosum_M_contig883.32.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.810e-20
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:   22 GQVYIYTS-FTYLGGTVTEMPNLSDEIDRRIRAGWMDFKRYKRELYDLPKASLLPLKARVVRSEVVEALLYGCVTWTPLKCHYAKLRTTNHRM 297
            GQ Y  T+ F YLGG V E  +L+ EI+ R +A W   KRY  EL+D P A    LKAR++++E VEALLYGC+TW+P + HY  L+TT+HR+
Sbjct: 1134 GQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFR-LKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRL 1225
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig883.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYZ4_9PHAE4.220e-2251.61Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KXX8_9PHAE4.670e-2251.61Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JLH5_9PHAE3.690e-2151.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS4_9PHAE1.210e-2051.61Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KLX9_9PHAE2.970e-2049.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K038_9PHAE3.190e-2049.46Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KPJ4_9PHAE3.630e-2050.54Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JEX7_9PHAE3.720e-2051.61Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7U5_9PHAE3.780e-2051.61Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K319_9PHAE3.810e-2051.61Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig883contigA-nodosum_M_contig883:263957..264253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog281687.CJA42353
PFAMsExo_endo_phos_2,RVT_1
Model size297
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.93e-09
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39QMY@33154|Opisthokonta,3CR1P@33208|Metazoa,3E777@33213|Bilateria,40RJ6@6231|Nematoda,1M8PB@119089|Chromadorea,40RUG@6236|Rhabditida
DescriptionEndonuclease-reverse transcriptase
Cds size297
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870295.6056414-CDS-A-nodosum_M_contig883:263956..2642531680870295.6056414-CDS-A-nodosum_M_contig883:263956..264253Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig883 263957..264253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig883.32.1prot_A-nodosum_M_contig883.32.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig883 263957..264253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig883.32.1

>prot_A-nodosum_M_contig883.32.1 ID=prot_A-nodosum_M_contig883.32.1|Name=mRNA_A-nodosum_M_contig883.32.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=99bp
WYCTIFQGQVYIYTSFTYLGGTVTEMPNLSDEIDRRIRAGWMDFKRYKRE
LYDLPKASLLPLKARVVRSEVVEALLYGCVTWTPLKCHYAKLRTTNHRM
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mRNA from alignment at A-nodosum_M_contig883:263957..264253+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig883.32.1 ID=mRNA_A-nodosum_M_contig883.32.1|Name=mRNA_A-nodosum_M_contig883.32.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at A-nodosum_M_contig883:263957..264253+ (Ascophyllum nodosum dioecious)
TGGTATTGTACAATTTTCCAGGGTCAAGTCTATATCTATACCTCCTTCAC
CTACCTGGGAGGCACAGTGACTGAAATGCCTAACCTGTCAGACGAGATCG
ACCGGCGGATCCGCGCGGGGTGGATGGATTTCAAGCGCTACAAGCGGGAA
CTGTACGACCTCCCGAAGGCAAGCCTGCTGCCTCTGAAGGCGCGGGTGGT
AAGATCCGAGGTAGTAGAAGCTCTCTTGTACGGATGCGTGACATGGACCC
CCCTGAAGTGCCACTACGCCAAGCTCCGTACAACAAACCACAGGATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig883:263957..264253+

>mRNA_A-nodosum_M_contig883.32.1 ID=mRNA_A-nodosum_M_contig883.32.1|Name=mRNA_A-nodosum_M_contig883.32.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=297bp|location=Sequence derived from alignment at A-nodosum_M_contig883:263957..264253+ (Ascophyllum nodosum dioecious)
TGGTATTGTACAATTTTCCAGGGTCAAGTCTATATCTATACCTCCTTCAC
CTACCTGGGAGGCACAGTGACTGAAATGCCTAACCTGTCAGACGAGATCG
ACCGGCGGATCCGCGCGGGGTGGATGGATTTCAAGCGCTACAAGCGGGAA
CTGTACGACCTCCCGAAGGCAAGCCTGCTGCCTCTGAAGGCGCGGGTGGT
AAGATCCGAGGTAGTAGAAGCTCTCTTGTACGGATGCGTGACATGGACCC
CCCTGAAGTGCCACTACGCCAAGCTCCGTACAACAAACCACAGGATG
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