mRNA_A-nodosum_M_contig883.25.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig883.25.2
Unique NamemRNA_A-nodosum_M_contig883.25.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig883.25.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig883contigA-nodosum_M_contig883:202921..206319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size614
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_004510.2
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870295.0607421-CDS-A-nodosum_M_contig883:202920..2032501680870295.0607421-CDS-A-nodosum_M_contig883:202920..203250Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig883 202921..203250 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870295.0758538-UTR-A-nodosum_M_contig883:203250..2032881680870295.0758538-UTR-A-nodosum_M_contig883:203250..203288Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig883 203251..203288 -
1680870295.0871122-UTR-A-nodosum_M_contig883:206073..2063191680870295.0871122-UTR-A-nodosum_M_contig883:206073..206319Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig883 206074..206319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig883.25.2prot_A-nodosum_M_contig883.25.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig883 202921..203250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig883.25.2

>prot_A-nodosum_M_contig883.25.2 ID=prot_A-nodosum_M_contig883.25.2|Name=mRNA_A-nodosum_M_contig883.25.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=110bp
MEANKIISFLATTGAILLTTTLDCTVRRASATTSTPSSSTEICLLESAIC
FDAGVCWDCVAQLVDAADCAERYPVLADEGASNCEVGAAMLCCSFDASVE
DCLGDAVTMD
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mRNA from alignment at A-nodosum_M_contig883:202921..206319-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig883.25.2 ID=mRNA_A-nodosum_M_contig883.25.2|Name=mRNA_A-nodosum_M_contig883.25.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3399bp|location=Sequence derived from alignment at A-nodosum_M_contig883:202921..206319- (Ascophyllum nodosum dioecious)
AAATCATACGACAGCTAGACCTCAGAACGCGTACACTGGAATGAAAGAAG
CCAGGGAGGGGAAGGAAACTGCTGTAGCTAAGACGGCGTGATAAATCGAA
GTCGCTCGGAGGTGGACATACTCGATAATAATATAATAATCGGACTCTAG
GTGCCTTCGTAAGTTTGAACTCTGCAAGGTAAAGAAGGAAAAAAAGGAAC
GTCGAGAGAGGACAAAGGACGGTGGACGGGCAGGCGGGCTCTAAAGGTAC
GACACCACTGTTTATGGTAATATATCGGTCCATAATTCCGAAAAAGCGAT
GCAGTGTGTACTGAGTAGCAAGTATTTTGTGCTGTAGGTGGAGACCGCGT
CAAGCGCAACCAGTCTTGAGAGCATGGGGCTCTAGGCAAAGGATTCCCGC
TGCGGGTTGTGAGTACAATGACTCTTTGGAGCCAGCCATTACAAGTACTG
CCTTGGTGCGAAAGCTCAGCAGCCTTGAGAAATATTTTTGAGGAGGTCTA
TTTTTGTCTCGTTCCCCTATAGCTGGTACTACAGTACCGTATTGGGTATC
ATTTCTAGCATTATTATTTATTTACCGTTGGGTGGTGAAAATCGCAGTAG
ACCTGGTAAAACGGGTTGTCTAGAGCCCCTTGTGCTAACGTCAGGATCAC
TCGAGGCTCCTCATAACGCTTACCCTATATTCGACCCGTGGAGAAAGATT
ACCATGACGCACTGCATGTGGCAAGGGATTGATGTTCCTCGAGCTTGCCT
GGTGACAAGGATGCTGCCTCGCGCTTACCGGGTTCGTACAGCACGGGCAA
TGATGCAACCATCCGTCACTCAACGGTTATCACGTATATTGAGCAGGATC
TCTAGAATGTTCAAAACGAAAACGGTTGACCAGTGGTTCTATCTCGCCGC
TTTCTTTCGTACTGTGACCATTAGAATTTTCCACATTTTTTAGGTTATAT
AGAGCTCTATAGGCTTGTGTAGTGTATGTATAGTTGTAGCAGAACATAGA
TCAAGCGGGTAAGGTTCATTGTGTTTAGACCAATCCTGCCTGTGGTCAGC
TGAACAATTTTTCTTTGAAATCCTCACAATGTATTGATCCTACACAATCA
GTAGTGCGGATTTCGTGAATTCGAATCTTGAGAGGACGATTTATTTCACG
TGTACTTTGGCTTCCGTAGCAGAAATCGTGATAACGTGAGTAAATAAAAT
TCACTCATTGATTGACGAGGTGTACGATTGCTCAATTTGCATCGATGTCG
TGATTGTCTTTTAAAGAAAAATCTGAATGCACCTAGACCTTCTGAGCATC
CCCCAGTCAGGTGGAAAAAAATGTCAAAACGTTTAGGTGGGATCAATAGC
TGAAAATACAAAACCTCTTCATGGCATTTAAACGGGTTCCCCGATGGTAA
TAACATTGGGTCAACAGTATAATGTCGGGGAGAAACCCACCGTCATACTG
TACACTTACATTAATCGCCATGCAGGGACACCAACAAAAGGGAAGACAAA
ACAATACATCATCAAACAATAAAGACAAATACAATACAATAATTGAAACA
CGCACAGCAGAGCAGAGGACCATGATGAGAGTCTTCATAATCCAGAAACA
GTACAAGACGCCGTTATTCACCTGGAAGTAGACGAAGAGCAGTAGGCGAT
CACACAAGGCGGTAAGAGGCAAGCGGAAAGAACTGGGTTCCTCGCTCCAT
ACTTGTCAGGGCTACGACACACAGATGCTCCTCATGCATGGACTTAGCTA
TGGTCCCGCGTTGACCAGAAACACAGAGGAAAGAGCATCTGTCTGCCAAA
CAAAGTGACCAAGTAGGCCTCAGGCCACCTCGTGTAACCTCCCACCCAAT
CCTGACCCGAACCATCTTCAGCTCCATGTCTTTTATTCCGAACTGTCTTT
TCCTCGCGTTACGTTTGTGTTAAATAAAGATATGAACGCGTTTCGTCTTT
TTGCTTTCATTGAAGCCGCGGCCCTCCGTTCGATCGTTCTTCGATATACA
TGCGTCTCGGCAGCCACACGCAGTTGTTAGCTAACAACTGCATGTGTAAT
TTTTTTTTTGTGTTTTTTTTTTACGAAATATTTTGTACCATTGCCGTTTT
CTCCTTGTTTGGAGAGTATGTTGTACGTTTTCCCCCCGGATGGTGTTTTT
CTACCTTGTGACCACGGGCTAGATTTTTGACATCAGCCTACTATTATGTG
AGAATTCAATCAATCAATCAAAATCGTGAAAAAATGCCGTAGGTGAGAAA
CGGGGGGAGAGGGGAAGATATTTATTGTTAGTGTCTACAGGCATTAATTA
GCATTAACAATAACATTAACAGGATGGCAACATTGCAGTAGATGGGATTG
GTAACCTGGCACTTTACAGCCCGTACGCCATATTTGAGGTTCACGACATA
TTAGAGGTTCTAAACAAAAAAGCTACTGTACAACATTTTAGTATTTGAGG
CTCATTTTCGCCCGTCCAACTGTGCTGTTTGGCACAAAAGCTGGTAGAAC
CATGTCATGCGCATGGCTTGTTTAAAAAAAAAAATGTTTCAGGCCGAAAC
GCGAAGCGCAGCATGTGGTGATACACGTAAAAGTACTGTAGAACAAGGTC
ATGTTGCTACATGTATTAATAGCACATTTTTTTGTTTGCATCCTATTTAC
GGCCGATGGGCGTCACCAATCCCAGTTACTGCAACGTTGCCATCCTACCT
GTGGACACTAAGGATCTTCCCATCGCTCTCCGGTTCTCGCCTTATTACTT
TTTATCGGATGCAAGTCTAGCACTCTTACAAAACTCGTCAACCAACGGTT
GTATTTTACTTTCTCACGTTCTCACGCTTTCCGCTACGGAAGACAGAACA
GAGAATAAAAATCACGTTTTTTCACAAAAAACGATTTCACGACTTCCGCA
CAACCAATACTTGTGCGAGGTTACCTACTAGACTACTCGGGCGAGATATA
TATACTGAAGTCTGAATATTCGTGGATTTTTTCTTTTTTTTTCCCGTCCG
AATGTCATCCCGCAATCATCGCTTTGATCAGATAACGTGGACGGTAAAGG
GAACACGTCAACCTTCAGCATGGAAGCCAACAAGATAATTTCTTTTCTAG
CGACCACCGGGGCAATCCTGTTAACGACCACGTTAGATTGCACCGTACGA
CGTGCGAGCGCCACAACCAGCACTCCTTCTTCCTCCACCGAAATCTGCTT
GTTGGAAAGTGCGATTTGCTTCGATGCAGGCGTCTGCTGGGACTGCGTTG
CGCAGTTAGTCGATGCTGCGGACTGCGCCGAGCGCTATCCCGTATTGGCG
GACGAGGGAGCGAGTAACTGCGAGGTCGGCGCGGCAATGCTGTGCTGCAG
CTTCGACGCGAGTGTAGAAGACTGCCTTGGCGACGCGGTAACCATGGAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig883:202921..206319-

>mRNA_A-nodosum_M_contig883.25.2 ID=mRNA_A-nodosum_M_contig883.25.2|Name=mRNA_A-nodosum_M_contig883.25.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at A-nodosum_M_contig883:202921..206319- (Ascophyllum nodosum dioecious)
ATGGAAGCCAACAAGATAATTTCTTTTCTAGCGACCACCGGGGCAATCCT
GTTAACGACCACGTTAGATTGCACCGTACGACGTGCGAGCGCCACAACCA
GCACTCCTTCTTCCTCCACCGAAATCTGCTTGTTGGAAAGTGCGATTTGC
TTCGATGCAGGCGTCTGCTGGGACTGCGTTGCGCAGTTAGTCGATGCTGC
GGACTGCGCCGAGCGCTATCCCGTATTGGCGGACGAGGGAGCGAGTAACT
GCGAGGTCGGCGCGGCAATGCTGTGCTGCAGCTTCGACGCGAGTGTAGAA
GACTGCCTTGGCGACGCGGTAACCATGGAC
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