mRNA_A-nodosum_M_contig8825.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8825.1.1
Unique NamemRNA_A-nodosum_M_contig8825.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig8825.1.1 vs. uniprot
Match: A0A6H5JMA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.370e-17
Identity = 52/86 (60.47%), Postives = 61/86 (70.93%), Query Frame = -1 
Query:  109 KVAKKDDRQRRLTQEQQDQLQEF-NDEHKAERQVFRRTRYVFHRTEADWMYWACSTETLLSNGAVEGLTQRLVCRHRRGRIKTPPL 363
            K AKKDD +RRLT+ Q+DQL+EF NDEHKA RQVFR       RT A+WM+  C+ E   SNG+  GL  RL C+ RRGRIKTPPL
Sbjct:  228 KTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFR-------RTVAEWMHRTCNMEQP-SNGSAGGLLSRLGCKRRRGRIKTPPL 305
[Close]
BLAST of mRNA_A-nodosum_M_contig8825.1.1 vs. uniprot
Match: A0A6H5JVE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE0_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 5.200e-16
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = -1 
Query:  106 KVAKKDDRQRRLTQEQQDQLQEF-NDEHKAERQVFRRTRYVFHRTEADWMYWACSTETLLSNGAVEGLTQRLVCRHRRGRIKTPPLD 363
            K AKKDD +RRLT+ Q+DQL+EF NDEHKA RQVFR       RT A+WM+  C+ E   SN +  GL  RL  + RRGRIKTPPL+
Sbjct:  126 KTAKKDDGRRRLTKAQEDQLREFINDEHKAGRQVFR-------RTVAEWMHRTCNMEQP-SNRSAGGLLSRLGFKRRRGRIKTPPLN 204
[Close]
BLAST of mRNA_A-nodosum_M_contig8825.1.1 vs. uniprot
Match: A0A6H5KKL0_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL0_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 7.560e-16
Identity = 51/87 (58.62%), Postives = 61/87 (70.11%), Query Frame = -1 
Query:  106 KVAKKDDRQRRLTQEQQDQLQEF-NDEHKAERQVFRRTRYVFHRTEADWMYWACSTETLLSNGAVEGLTQRLVCRHRRGRIKTPPLD 363
            K AKKDD +RRLT+ Q+DQL+EF NDEHKA RQVFR       RT A+WM+  C+ E   SN + EGL  RL  + RRGRIKTPPL+
Sbjct:   57 KTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFR-------RTVAEWMHRTCNMEQP-SNRSAEGLLSRLGYKGRRGRIKTPPLN 135
[Close]
BLAST of mRNA_A-nodosum_M_contig8825.1.1 vs. uniprot
Match: A0A6H5JWX3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWX3_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 9.690e-16
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = -1 
Query:  106 KVAKKDDRQRRLTQEQQDQLQEF-NDEHKAERQVFRRTRYVFHRTEADWMYWACSTETLLSNGAVEGLTQRLVCRHRRGRIKTPPLD 363
            K AKKDD +RRLT+ Q+DQL+EF NDEHKA RQVFR       RT A+WM+  C+ E   SN +  GL  RL  + RRGRIKTPPL+
Sbjct:   25 KTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFR-------RTVAEWMHSTCNMEQP-SNRSAGGLLSRLGYKRRRGRIKTPPLN 103
[Close]
BLAST of mRNA_A-nodosum_M_contig8825.1.1 vs. uniprot
Match: A0A6H5KAU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAU4_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.590e-15
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = -1 
Query:  106 KVAKKDDRQRRLTQEQQDQLQEF-NDEHKAERQVFRRTRYVFHRTEADWMYWACSTETLLSNGAVEGLTQRLVCRHRRGRIKTPPLD 363
            K AKKDD +RRLT+ Q+DQL+EF NDEHKA RQVFR       RT A+WM+  C+ E   SN +  GL  RL  + RRGRIKTPPL+
Sbjct:  135 KTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFR-------RTVAEWMHRTCNMEQP-SNRSAGGLLSRLGYKRRRGRIKTPPLN 213
[Close]
BLAST of mRNA_A-nodosum_M_contig8825.1.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.690e-15
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = -1 
Query:  106 KVAKKDDRQRRLTQEQQDQLQEF-NDEHKAERQVFRRTRYVFHRTEADWMYWACSTETLLSNGAVEGLTQRLVCRHRRGRIKTPPLD 363
            K AKKDD +RRLT+ Q+DQL+EF NDEHKA RQVFR       RT A+WM+  C+ E   SN +  GL  RL  + RRGRIKTPPL+
Sbjct:   45 KTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFR-------RTVAEWMHRTCNMEQP-SNRSAGGLLSRLGYKRRRGRIKTPPLN 123
[Close]
BLAST of mRNA_A-nodosum_M_contig8825.1.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.870e-15
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = -1 
Query:  106 KVAKKDDRQRRLTQEQQDQLQEF-NDEHKAERQVFRRTRYVFHRTEADWMYWACSTETLLSNGAVEGLTQRLVCRHRRGRIKTPPLD 363
            K AKKDD +RRLT+ Q+DQL+EF NDEHKA RQVFR       RT A+WM+  C+ E   SN +  GL  RL  + RRGRIKTPPL+
Sbjct:   45 KTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFR-------RTVAEWMHRTCNMEQP-SNRSAGGLLSRLGYKRRRGRIKTPPLN 123
[Close]
BLAST of mRNA_A-nodosum_M_contig8825.1.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.990e-15
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = -1 
Query:  106 KVAKKDDRQRRLTQEQQDQLQEF-NDEHKAERQVFRRTRYVFHRTEADWMYWACSTETLLSNGAVEGLTQRLVCRHRRGRIKTPPLD 363
            K AKKDD +RRLT+ Q+DQL+EF NDEHKA RQVFR       RT A+WM+  C+ E   SN +  GL  RL  + RRGRIKTPPL+
Sbjct:  162 KTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFR-------RTVAEWMHRTCNMEQP-SNRSAGGLLSRLGYKRRRGRIKTPPLN 240
[Close]
BLAST of mRNA_A-nodosum_M_contig8825.1.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 4.000e-15
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = -1 
Query:  106 KVAKKDDRQRRLTQEQQDQLQEF-NDEHKAERQVFRRTRYVFHRTEADWMYWACSTETLLSNGAVEGLTQRLVCRHRRGRIKTPPLD 363
            K AKKDD +RRLT+ Q+DQL+EF NDEHKA RQVFR       RT A+WM+  C+ E   SN +  GL  RL  + RRGRIKTPPL+
Sbjct:  173 KTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFR-------RTVAEWMHRTCNMEQP-SNRSAGGLLSRLGYKRRRGRIKTPPLN 251
[Close]
BLAST of mRNA_A-nodosum_M_contig8825.1.1 vs. uniprot
Match: A0A6H5KGQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGQ7_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.880e-14
Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = -1 
Query:  112 KVAKKDDRQRRLTQEQQDQLQEF-NDEHKAERQVFRRTRYVFHRTEADWMYWACSTETLLSNGAVEGLTQRLVCRHRRGRIKTPP 363
            K AK+DD +RR+T+ Q+DQL+EF +DEHKA RQVFR       RT A+WM+  C+ E   SN +  GL  RL  + RRGRIKTPP
Sbjct:   46 KTAKRDDGRRRVTEVQEDQLREFISDEHKAGRQVFR-------RTVAEWMHRTCNMEQP-SNRSAGGLLSRLGYKRRRGRIKTPP 122
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8825.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JMA8_9PHAE1.370e-1760.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVE0_9PHAE5.200e-1657.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKL0_9PHAE7.560e-1658.62DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5JWX3_9PHAE9.690e-1657.47Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KAU4_9PHAE3.590e-1557.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDX7_9PHAE3.690e-1557.47DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K024_9PHAE3.870e-1557.47DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KIM5_9PHAE3.990e-1557.47DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5JR41_9PHAE4.000e-1557.47DDE_3 domain-containing protein n=5 Tax=Ectocarpus... [more]
A0A6H5KGQ7_9PHAE1.880e-1454.12Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8825contigA-nodosum_M_contig8825:4646..5026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size382
Hectar predicted targeting categoryother localisation
Exons1
Cds size381
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870292.3616827-CDS-A-nodosum_M_contig8825:4645..50261680870292.3616827-CDS-A-nodosum_M_contig8825:4645..5026Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8825 4646..5026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8825.1.1prot_A-nodosum_M_contig8825.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8825 4646..5026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8825.1.1

>prot_A-nodosum_M_contig8825.1.1 ID=prot_A-nodosum_M_contig8825.1.1|Name=mRNA_A-nodosum_M_contig8825.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=127bp
RRCVDPALRCLHTSLCVNPSTARFDSRVSVLHVQYIQRRCFDPASTVPTH
EPLRQPFYRAVRQQSLRAACPVHPIRLRTVENIARTAENLALGLVLVVEL
LKLILLLLSETALPVVFLGDLLPYDVV
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mRNA from alignment at A-nodosum_M_contig8825:4646..5026+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8825.1.1 ID=mRNA_A-nodosum_M_contig8825.1.1|Name=mRNA_A-nodosum_M_contig8825.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=381bp|location=Sequence derived from alignment at A-nodosum_M_contig8825:4646..5026+ (Ascophyllum nodosum dioecious)
CGGCGGTGTGTTGATCCTGCTCTACGGTGCCTACACACGAGCCTTTGCGT
CAACCCTTCTACCGCGCGGTTCGACAGTAGAGTCTCCGTGCTGCATGTCC
AGTACATCCAACGGCGGTGTTTTGATCCTGCCTCTACGGTGCCTACACAC
GAGCCTTTGCGTCAACCCTTCTACCGCGCCGTTCGACAGCAGAGTCTCCG
TGCTGCATGCCCAGTACATCCAATCCGCCTCCGTACGGTGGAAAACATAG
CGCGTACGGCGGAAAACTTGGCGCTCGGCCTTGTGCTCGTCGTTGAACTC
TTGAAGTTGATCCTGTTGCTCTTGAGTGAGACGGCGTTGCCTGTCGTCTT
TCTTGGCGACCTTCTTCCCTATGACGTCGTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8825:4646..5026+

>mRNA_A-nodosum_M_contig8825.1.1 ID=mRNA_A-nodosum_M_contig8825.1.1|Name=mRNA_A-nodosum_M_contig8825.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=381bp|location=Sequence derived from alignment at A-nodosum_M_contig8825:4646..5026+ (Ascophyllum nodosum dioecious)
CGGCGGTGTGTTGATCCTGCTCTACGGTGCCTACACACGAGCCTTTGCGT
CAACCCTTCTACCGCGCGGTTCGACAGTAGAGTCTCCGTGCTGCATGTCC
AGTACATCCAACGGCGGTGTTTTGATCCTGCCTCTACGGTGCCTACACAC
GAGCCTTTGCGTCAACCCTTCTACCGCGCCGTTCGACAGCAGAGTCTCCG
TGCTGCATGCCCAGTACATCCAATCCGCCTCCGTACGGTGGAAAACATAG
CGCGTACGGCGGAAAACTTGGCGCTCGGCCTTGTGCTCGTCGTTGAACTC
TTGAAGTTGATCCTGTTGCTCTTGAGTGAGACGGCGTTGCCTGTCGTCTT
TCTTGGCGACCTTCTTCCCTATGACGTCGTC
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