mRNA_A-nodosum_M_contig8822.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8822.7.1
Unique NamemRNA_A-nodosum_M_contig8822.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8822.7.1 vs. uniprot
Match: D7G867_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G867_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.500e-10
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 3 
Query:    3 QATSLVVFAATPRDQDRFFWSPLHPKPD*SNTRQDLGCALRCTDSECGAV 152
            +A S+V+FAATPRDQ+RFFWSPLHPKPD S  + +L  AL       G  
Sbjct: 1300 KAASVVIFAATPRDQERFFWSPLHPKPDWSQAKAELRLALESASPRGGGT 1349
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8822.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G867_ECTSI1.500e-1056.00PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8822contigA-nodosum_M_contig8822:9645..10019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870292.2378542-CDS-A-nodosum_M_contig8822:9644..97241680870292.2378542-CDS-A-nodosum_M_contig8822:9644..9724Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8822 9645..9724 +
1680870292.2522-CDS-A-nodosum_M_contig8822:9937..100191680870292.2522-CDS-A-nodosum_M_contig8822:9937..10019Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8822 9938..10019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8822.7.1prot_A-nodosum_M_contig8822.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8822 9645..10019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8822.7.1

>prot_A-nodosum_M_contig8822.7.1 ID=prot_A-nodosum_M_contig8822.7.1|Name=mRNA_A-nodosum_M_contig8822.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=54bp
SRRPAWWFLQQLPGIKIASFGRLSTLSRTSRIRGKTSGALSGVPTRSAGR
FLC*
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mRNA from alignment at A-nodosum_M_contig8822:9645..10019+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8822.7.1 ID=mRNA_A-nodosum_M_contig8822.7.1|Name=mRNA_A-nodosum_M_contig8822.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at A-nodosum_M_contig8822:9645..10019+ (Ascophyllum nodosum dioecious)
TCCAGGCGACCAGCTTGGTGGTTTTTGCAGCAACTCCCAGGGATCAAGAT
CGCTTCTTTTGGTCGCCTCTCCACCCTAAGGTCAAAGTGAAGCCGGCGTT
GCACGGCGAGATGGAACGTTTAGGCGACTCGTTCACGTTCCGTTCAATAG
CACTTTATTGGGTTTCAGTGTTTGTATTTGTATGCGCCAACGTTTCACGT
CGTGCGTGATGTACTATCAAAACTACTGTCTTGCTTTCTTTGCTGTCGGC
GTGTTTGCTTTGCCCTGGTTCGCATCCATCGGTCCATCGGCAGCCGGACT
AGTCGAATACGAGGCAAGACCTCGGGTGCGCTCTCCGGTGTACCGACTCG
GAGTGCGGGGCGGTTCCTTTGCTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8822:9645..10019+

>mRNA_A-nodosum_M_contig8822.7.1 ID=mRNA_A-nodosum_M_contig8822.7.1|Name=mRNA_A-nodosum_M_contig8822.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=162bp|location=Sequence derived from alignment at A-nodosum_M_contig8822:9645..10019+ (Ascophyllum nodosum dioecious)
TCCAGGCGACCAGCTTGGTGGTTTTTGCAGCAACTCCCAGGGATCAAGAT
CGCTTCTTTTGGTCGCCTCTCCACCCTAAGCCGGACTAGTCGAATACGAG
GCAAGACCTCGGGTGCGCTCTCCGGTGTACCGACTCGGAGTGCGGGGCGG
TTCCTTTGCTGA
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