mRNA_A-nodosum_M_contig880.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig880.1.1
Unique NamemRNA_A-nodosum_M_contig880.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig880.1.1 vs. uniprot
Match: A0A6H5KY76_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY76_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.460e-16
Identity = 44/87 (50.57%), Postives = 53/87 (60.92%), Query Frame = 3 
Query:    3 VLNADMPTYASDVYSFGIVMWEILSGDTPWASIARPWGIMARV-FNGHRPPILDHFPTDLAAITQTCWVNKPEDRPLAEEIMRRLKS 260
            VL A   TYASDVYSFGIV WE+LS + PWAS+  P  +  RV  N  RP I    P D+A I + CW   PE RP +  IM R++S
Sbjct: 1119 VLGASGSTYASDVYSFGIVAWEVLSRELPWASVVHPREVYIRVVLNELRPEIPADAPADIATIMRACWAGDPEARPTSSAIMERIES 1205
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BLAST of mRNA_A-nodosum_M_contig880.1.1 vs. uniprot
Match: D8LHV1_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV1_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 4.050e-15
Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = 3 
Query:    3 VLNADMPTYASDVYSFGIVMWEILSGDTPWASIARPWGIMARVFNGHRPPILDHFPTDLAAITQTCWVNKPEDRPLAEEIMRRL--KSPH 266
            VL +   TYASDVYSFGIV+WE++SG+ PWA+  RP  I++ V  G RP      P D+  I + CWV +P  R   + ++  +  K PH
Sbjct:  999 VLESGGSTYASDVYSFGIVVWEVVSGELPWANKTRPREILSAVLMGARPSFRHDAPADIVEIAKACWVGEPRARTTFDAVLEGMDSKEPH 1088
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BLAST of mRNA_A-nodosum_M_contig880.1.1 vs. uniprot
Match: D8LRE9_ECTSI (Transmembrane receptor kinase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE9_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.800e-14
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = 3 
Query:    3 VLNADMPTYASDVYSFGIVMWEILSGDTPWASIARPWGIMARVFNGHRPPILDHFPTDLAAITQTCWVNKPEDRPLAEEIMRRLKS 260
            VL +   T ASDVYSFGIV+WE++SG+ PWA+ +RP  I++ V  G RP   D  PTD+  I + CW  +P+ R   + +M  + S
Sbjct:  861 VLESGGSTRASDVYSFGIVVWEVVSGELPWANKSRPREILSAVLMGVRPSFNDIAPTDMVEIAKACWEGEPDARTTFDAVMEGMMS 946
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BLAST of mRNA_A-nodosum_M_contig880.1.1 vs. uniprot
Match: D8LAU2_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU2_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.180e-13
Identity = 39/85 (45.88%), Postives = 48/85 (56.47%), Query Frame = 3 
Query:    3 VLNADMPTYASDVYSFGIVMWEILSGDTPWASIARPWGIMARVFNGHRPPILDHFPTDLAAITQTCWVNKPEDRPLAEEIMRRLK 257
            VL A+  TY SDVYSFGIV WE++S   PWA   RP  ++  V  G RP I      D+A + + CW  +PE RP    IM  LK
Sbjct:  298 VLEAEGSTYESDVYSFGIVAWEVISKKMPWADKIRPRDVICAVLKGLRPVIPAGATVDIADVMKACWAEEPEARPKFGAIMEGLK 382
[Close]
BLAST of mRNA_A-nodosum_M_contig880.1.1 vs. uniprot
Match: A0A6H5K914_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K914_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.400e-13
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 3 
Query:    3 VLNADMPTYASDVYSFGIVMWEILSGDTPWASIARPWGIMARV-FNGHRPPILDHFPTDLAAITQTCWVNKPEDRP 227
            VL +   + ASDVYSFG+V WE+L+  TPWA  ARP  I  RV     RP +    P D+A + ++CW  +PEDRP
Sbjct:   13 VLESKETSKASDVYSFGMVAWEVLTRQTPWADQARPRDIYLRVVMREERPAMPAGGPVDIAEMVRSCWAQEPEDRP 88
[Close]
BLAST of mRNA_A-nodosum_M_contig880.1.1 vs. uniprot
Match: A0A6H5JSI8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI8_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 9.090e-13
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 
Query:    3 VLNADMPTYASDVYSFGIVMWEILSGDTPWASIARPWGIMARVFNGHRPPILDHFPTDLAAITQTCWVNKPEDRPLAEEIMRRLKS 260
            VL+++  +Y SDVYSFGIV+WE+LS + PWA+  RP  ++  V  G RP      P D+  I + CW  +P++R     I+  +K+
Sbjct:  808 VLDSEKSSYESDVYSFGIVVWEVLSRELPWANKTRPSEVLTAVLRGIRPSFHVGAPADIVDIAKACWCGEPKERTTFRAILDGMKA 893
[Close]
BLAST of mRNA_A-nodosum_M_contig880.1.1 vs. uniprot
Match: D8LH32_ECTSI (Leucine rich repeat tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH32_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 3.160e-12
Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 3 
Query:    3 VLNADMPTYASDVYSFGIVMWEILSGDTPWASIARPWGIMARV-FNGHRPPILDHFPTDLAAITQTCWVNKPEDRP 227
            VL +   + ASDVYSFG+V WE+L+  TPWA  ARP  I  RV     RP I    P D+A + ++CW  +PEDRP
Sbjct: 1009 VLESKETSTASDVYSFGMVAWEVLTRQTPWADQARPRDIYLRVVMREERPAIPADAPVDIAEMVRSCWAQEPEDRP 1084
[Close]
BLAST of mRNA_A-nodosum_M_contig880.1.1 vs. uniprot
Match: A0A2N0SEF0_9GLOM (Kinase-like protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N0SEF0_9GLOM)

HSP 1 Score: 72.0 bits (175), Expect = 5.030e-12
Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 3 
Query:    3 VLNADMPTYASDVYSFGIVMWEILSGDTPWASIARPWGIMARVFNGHRPPILDHFPTDLAAITQTCWVNKPEDRPLAEEIMRRLK 257
            VL+   PT +SD+YSFGI+MWE+ S + P+   A    ++  + NG RP I+   P    ++ + CW + P  RP AEE++  +K
Sbjct:    5 VLSGQQPTLSSDIYSFGIIMWELSSFNPPFHDKAHDIKLIMEICNGCRPDIVKETPNAYVSLMKRCWHSDPAKRPTAEELVYLIK 89
[Close]
BLAST of mRNA_A-nodosum_M_contig880.1.1 vs. uniprot
Match: D7FL78_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL78_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 5.110e-12
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 3 
Query:    3 VLNADMPTYASDVYSFGIVMWEILSGDTPWASIARPWGIMARVFNGHRPPILDHFPTDLAAITQTCWVNKPEDRPLAEEIM 245
            +L  +  ++ASDVYSFGIV+WE+ S   PWA+  RP  I++ V  G R       P D+  I + CW  +PE+R     I+
Sbjct:   10 MLEEEGSSFASDVYSFGIVVWEVFSRKLPWANKTRPREILSAVLRGKRSLFHTATPADIVDIAKACWGGEPEERTTFSAIL 90
[Close]
BLAST of mRNA_A-nodosum_M_contig880.1.1 vs. uniprot
Match: D7FL57_ECTSI (Hypothetical leucine rich repeat kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL57_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 7.660e-12
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 3 
Query:    3 VLNADMPTYASDVYSFGIVMWEILSGDTPWASIARPWGIMARVFNGHRPPILDHFPTDLAAITQTCWVNKPEDRPLAEEIMRRLKS 260
            VL ++  +Y SDVYSFGIV+WE++  + PWA   RP  I+  V  G RP      P D+  I + CW  +P++R     I+  +K+
Sbjct:  892 VLESEGSSYESDVYSFGIVVWEVICRELPWAKKTRPRDILTAVLRGVRPSFHVDAPADIVYIAKACWCGEPKERTTFRAILMGIKA 977
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig880.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY76_9PHAE1.460e-1650.57Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LHV1_ECTSI4.050e-1543.33Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LRE9_ECTSI1.800e-1444.19Transmembrane receptor kinase n=2 Tax=Ectocarpus s... [more]
D8LAU2_ECTSI1.180e-1345.88Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5K914_9PHAE1.400e-1347.37Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JSI8_9PHAE9.090e-1339.53Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LH32_ECTSI3.160e-1248.68Leucine rich repeat tyrosine kinase n=1 Tax=Ectoca... [more]
A0A2N0SEF0_9GLOM5.030e-1237.65Kinase-like protein n=1 Tax=Rhizophagus irregulari... [more]
D7FL78_ECTSI5.110e-1239.51Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FL57_ECTSI7.660e-1238.37Hypothetical leucine rich repeat kinase n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig880contigA-nodosum_M_contig880:1104..1825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRF5
Preferred nameRIPK4
PFAMsAnk_2,Ank_3,Ank_4,Ank_5,Pkinase,Pkinase_Tyr
Model size722
Max annot lvl2759|Eukaryota
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
Exons1
Evalue2.34e-18
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
EC2.7.11.1
Descriptionprotein kinase activity
Cds size252
COG categoryKLT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870286.925174-UTR-A-nodosum_M_contig880:1103..11201680870286.925174-UTR-A-nodosum_M_contig880:1103..1120Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig880 1104..1120 +
1680870286.9602885-UTR-A-nodosum_M_contig880:1372..18251680870286.9602885-UTR-A-nodosum_M_contig880:1372..1825Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig880 1373..1825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870286.9382694-CDS-A-nodosum_M_contig880:1120..13721680870286.9382694-CDS-A-nodosum_M_contig880:1120..1372Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig880 1121..1372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig880.1.1prot_A-nodosum_M_contig880.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig880 1121..1372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig880.1.1

>prot_A-nodosum_M_contig880.1.1 ID=prot_A-nodosum_M_contig880.1.1|Name=mRNA_A-nodosum_M_contig880.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=84bp
MPTYASDVYSFGIVMWEILSGDTPWASIARPWGIMARVFNGHRPPILDHF
PTDLAAITQTCWVNKPEDRPLAEEIMRRLKSPH*
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mRNA from alignment at A-nodosum_M_contig880:1104..1825+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig880.1.1 ID=mRNA_A-nodosum_M_contig880.1.1|Name=mRNA_A-nodosum_M_contig880.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=722bp|location=Sequence derived from alignment at A-nodosum_M_contig880:1104..1825+ (Ascophyllum nodosum dioecious)
AGGTGTTGAACGCCGATATGCCGACTTACGCCAGCGATGTGTACAGCTTC
GGCATCGTGATGTGGGAGATCCTCTCTGGAGACACTCCCTGGGCTAGCAT
TGCTCGTCCTTGGGGCATAATGGCGCGTGTCTTCAACGGGCATCGCCCTC
CGATTCTTGACCACTTCCCTACAGACCTTGCGGCCATCACGCAGACCTGC
TGGGTCAACAAGCCGGAAGATCGTCCTTTGGCCGAGGAAATCATGAGGCG
CCTCAAGTCTCCCCATTAACGTGCTGCAACAGAGGACAGCAGGTGTAAAG
CACGGTGGATCTCCCGGTCTACGAGAAGTGTCACTCGCGTTCTAGGGGGG
CGGGAGAGTCCTGGTCTGGTGTACATGTGTATTACCCGCACAGCGACGAG
TCAGAGAGTTGATTTTGATCATTTGTAGTGGCAATACACAGCCAAAATTC
CCAATCCAACGATGGTTCTACAAGGTTTCGGAGATATTTTACATTGTGTT
GCCTGGATTTTCAGTATTTCGGAGAATGAATGAAATTACGAAACGTTTGC
GGCAGCAAAATATCTCCGGGAGCCAATACACGCAGTCTTCGTAACAAGGG
CCTAGGGCAAGCAAGCGCCTTTAGCTCCATTCCTTCGATGGGCCAATGAA
CACAGCGTACGTACGTATACCTGTGGGCAGTTGCTACACTTGCAGGTTGC
CTTCTTGGTCAAAATAGGGTGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig880:1104..1825+

>mRNA_A-nodosum_M_contig880.1.1 ID=mRNA_A-nodosum_M_contig880.1.1|Name=mRNA_A-nodosum_M_contig880.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at A-nodosum_M_contig880:1104..1825+ (Ascophyllum nodosum dioecious)
ATGCCGACTTACGCCAGCGATGTGTACAGCTTCGGCATCGTGATGTGGGA
GATCCTCTCTGGAGACACTCCCTGGGCTAGCATTGCTCGTCCTTGGGGCA
TAATGGCGCGTGTCTTCAACGGGCATCGCCCTCCGATTCTTGACCACTTC
CCTACAGACCTTGCGGCCATCACGCAGACCTGCTGGGTCAACAAGCCGGA
AGATCGTCCTTTGGCCGAGGAAATCATGAGGCGCCTCAAGTCTCCCCATT
AA
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