mRNA_A-nodosum_M_contig88.74.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig88.74.1
Unique NamemRNA_A-nodosum_M_contig88.74.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig88.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig88contigA-nodosum_M_contig88:782635..783469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size309
Hectar predicted targeting categoryother localisation
Exons3
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870281.623638-CDS-A-nodosum_M_contig88:782634..7827941680870281.623638-CDS-A-nodosum_M_contig88:782634..782794Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 782635..782794 +
1680870281.636084-CDS-A-nodosum_M_contig88:783167..7832811680870281.636084-CDS-A-nodosum_M_contig88:783167..783281Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 783168..783281 +
1680870281.6467907-CDS-A-nodosum_M_contig88:783435..7834671680870281.6467907-CDS-A-nodosum_M_contig88:783435..783467Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 783436..783467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig88.74.1prot_A-nodosum_M_contig88.74.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig88 782635..783467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig88.74.1

>prot_A-nodosum_M_contig88.74.1 ID=prot_A-nodosum_M_contig88.74.1|Name=mRNA_A-nodosum_M_contig88.74.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=102bp
SWDLNAGTRSTETESFRSARVARRRATYAERTERQRLRDAHERRMAGGAS
PAAVLTNAVTRLAWQQHQANVNAAAEAAALRAMHEESARLAAANAAADEA
AR
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mRNA from alignment at A-nodosum_M_contig88:782635..783469+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig88.74.1 ID=mRNA_A-nodosum_M_contig88.74.1|Name=mRNA_A-nodosum_M_contig88.74.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=835bp|location=Sequence derived from alignment at A-nodosum_M_contig88:782635..783469+ (Ascophyllum nodosum dioecious)
TCGTGGGATTTGAACGCCGGCACAAGGTCCACGGAAACTGAAAGTTTTAG
GTCGGCTCGTGTGGCTAGAAGACGGGCTACGTACGCCGAGCGAACGGAAC
GACAGCGCCTGCGTGATGCTCACGAAAGACGTATGGCGGGAGGCGCTAGT
CCTGCTGCAGGTGACAGCACCAGCAATTGGAAAACAAGGTTCTCTTGAGA
GAGCGTTCATTCGTTTGTGCCTTCAGTGTACGTAGACGAACTGCTGTGCT
ATTATAAAAACAAGAGAATTATATTTGCGATATTTGTTCGTCAAGCGTTC
CTGCCATGTTATACTATCTACCAATGTTTTCATATTACGTACGTCTCTCC
TGCCCACTGCATTCGTTTGTGCCTTAAGTGTACGTAGACGAACTGCTGTG
CTATTATAAAAACAAGAGAATTCTATTTGCGATATTTGTTCGTCAAGTGT
TCCTGCCATGTTATACTATCTACTTATGTTTTTGATATTACGTACGTCTC
TCCTGCCCACTGCACTGTGCGTACGTTTCGTAGTCCTTACAAACGCGGTA
ACACGGCTAGCTTGGCAACAACACCAGGCAAATGTTAATGCAGCTGCGGA
GGCGGCGGCATTGCGAGCTATGCATGAAGAATCGGCACGACTGGCAGGTG
AACCTAACGGCGGGCGTGTAGCATAGACCTTTTACTCCCGAAAATTAAGT
GGAAATAATATTTACATCAGTCAGGGAAAAAACAACAACGAATTTCAAAT
TCCCTCGTCCTCTGTTCTATGCGCCTGTGCCACTCTGCTTGGGTTTCATA
GCCGCGAACGCTGCTGCAGACGAGGCCGCAAGGAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig88:782635..783469+

>mRNA_A-nodosum_M_contig88.74.1 ID=mRNA_A-nodosum_M_contig88.74.1|Name=mRNA_A-nodosum_M_contig88.74.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at A-nodosum_M_contig88:782635..783469+ (Ascophyllum nodosum dioecious)
TCGTGGGATTTGAACGCCGGCACAAGGTCCACGGAAACTGAAAGTTTTAG
GTCGGCTCGTGTGGCTAGAAGACGGGCTACGTACGCCGAGCGAACGGAAC
GACAGCGCCTGCGTGATGCTCACGAAAGACGTATGGCGGGAGGCGCTAGT
CCTGCTGCAGTCCTTACAAACGCGGTAACACGGCTAGCTTGGCAACAACA
CCAGGCAAATGTTAATGCAGCTGCGGAGGCGGCGGCATTGCGAGCTATGC
ATGAAGAATCGGCACGACTGGCAGCCGCGAACGCTGCTGCAGACGAGGCC
GCAAGG
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