mRNA_A-nodosum_M_contig88.46.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig88.46.1
Unique NamemRNA_A-nodosum_M_contig88.46.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig88.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig88contigA-nodosum_M_contig88:393990..400850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2493
Hectar predicted targeting categoryother localisation
Exons2
Cds size1587
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870281.6772356-UTR-A-nodosum_M_contig88:393989..3946581680870281.6772356-UTR-A-nodosum_M_contig88:393989..394658Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig88 393990..394658 -
1680870281.7130752-UTR-A-nodosum_M_contig88:396245..3963051680870281.7130752-UTR-A-nodosum_M_contig88:396245..396305Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig88 396246..396305 -
1680870281.725991-UTR-A-nodosum_M_contig88:400673..4008501680870281.725991-UTR-A-nodosum_M_contig88:400673..400850Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig88 400674..400850 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870281.6997826-CDS-A-nodosum_M_contig88:394658..3962451680870281.6997826-CDS-A-nodosum_M_contig88:394658..396245Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 394659..396245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig88.46.1prot_A-nodosum_M_contig88.46.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig88 394659..396245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig88.46.1

>prot_A-nodosum_M_contig88.46.1 ID=prot_A-nodosum_M_contig88.46.1|Name=mRNA_A-nodosum_M_contig88.46.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=529bp
MVACAFGASCDKVARFAATGTEEPEFCFEHAYAGMVNVTSKRRSRKPFAR
TASPSDVAGSRDLSTEDTVGDTARKPGGSADCSNTPTHETPGGSEKREFC
AEYTIDGARAGVVNVTSEAASPSDISGGRKEDPGTERTASSAVDMPDGRC
SSAGFSKPPRYEMPDSSKKRKICAEHAVDGARARLVDVKSKPVSPSDVAG
SRGGDPNADHSVGIAVNVSDGRCSRTGCSKTPTHGSPGSEKREFCARHAV
YGMVNVSVNRQCGRVGCLKIPTHRKPGRKRKQFCEEHAVDGMISAFHNQR
CSWAGCSKGSLYGMPSTKKREFCAEHAVDGMVNMVHKRCSSAGCPKISSY
GMPSDRKREFCVEHMVDGMINLSVRQCAHVSCIKFPTYGVPGSQRPEFCV
THAADGMINLSSRRCSRQGCSKIPSYGMPGSKKREVCARHMVYGMVNMTL
KRCAQRGCSKIPSDGMVGSKRAKFCLEHEAEGLMRLPLRKVPGGKRSWKA
GQKARSPSEPAGAVSKVEVVKLEVTMSV*
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mRNA from alignment at A-nodosum_M_contig88:393990..400850-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig88.46.1 ID=mRNA_A-nodosum_M_contig88.46.1|Name=mRNA_A-nodosum_M_contig88.46.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6861bp|location=Sequence derived from alignment at A-nodosum_M_contig88:393990..400850- (Ascophyllum nodosum dioecious)
TGCCATGTGAGCCAGCATCATCTCTGCGGGCAAGAGTACCGGCTCGTGCT
CTGGTGAATGACCGTGCCATAAGGATGGTTTGAACTTCAACTACTGCTGT
AATTTTGACAGCCGCTGCTCACACCTAGTCCTTACTCCAAAGAAAGGGTC
GCCTGGCTGTGATACGGACATATCAAGGTAGGTAGGTGTGTATACAAACG
CGATTTGCTCTCATTCCCCCCCACCCGAAATTTCCTTCCTTCGATAATAT
TTTTGAGCTCTCCCAGATCATGATCGAATATTATGGTGTAGTGTGCGTTT
GCCGGTACCGCATGGTCGTAGTGCATGTGATGAATGCTCACAGCACCTCG
GTTGCAGGAAATCTTGAAGGTTCGGAGTCAGATATCGCTCTAGAGGTCCC
AAATAAAGCAACGCAACCACCCTTGAACATCTACTTAATTACAGTACCAC
TAACTGGTACCAGGTATACAGTAATAAGAACTTGTTGTCAACGGGCCTTT
CAATCTGTTACAGATCGAGCTGCCCATCCCTCCGGAGGTCCTAGCAGCAG
CGGACCCACGAACGACCCATAGAGCTCTATGCTATTTTTCCTTCGCCCGA
AACTTTCCAGACATGAGAACCTTACGAACACATCGAAAGGTTCAAGTTGG
TAGATTACTAAGTCATTTTCCGTGTTCAGCTGACCACGAGCAGGATTGGC
AACCTTACCTGGTTGATCCATACTCTGCTACTTTCAGCATGCCCACTTCA
TACCAATAGTGGGTGTGGGAAAGAGAGGCGAATATTAATTGGTCCATGGT
GATCTGCCAAGGCAGCACCCGTTCGGAACTACCTTGAGGTTTACTGGCCC
TGTGCCGGCGGACTCTCGGCAGTGAACGCCATCGGTACGCAATTGCGTGA
CCCGATAAGCTTGGGACTGACCCGATGGCGTATGGCGGTTTCATAATGGA
CGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCAGATTCAGC
CTGAGTATGGAGATGAGCAGGCTGACGCGGGACGGGACGGCTGAACCCGT
CTCGCGAGACCAAATTCTCAGGCACGCACGGGGACAGGGGAATATTCATT
TTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACCCGTTTGAT
CCATACTCTGCTATATGTGATGACCATACATATGTGTGATGACCGTACAT
ACATACATGAGGCCAACCGCTATGGAACCACAAAAATACAAAAACGGACA
AATGTCCGTAGGTCATTTTTGTGGGAAGCGCGCTATCGGAGCAAATAAAA
CAGAAAAGGCCCAGAAAGTTTTTGTGGTCTGTGTTTTTCTTTGTTTGTGG
TCTGTGAGGGACATACGGCACTGTTCACGCTTTTCAAAGCATTGTACAAA
ACCTGCCTTTGAGGACGAGATAGATGTGAAGAGTATAGCTGTCGCTACGA
ACTCGCGTTCGATGATATTTGTAACTATTGTCAGCTGTGTGCGTTGGTCG
GTCTGTATGTTTGTTTGATCCCATATATTCTGGCGCCAGTCTACGCCTTT
CGGTGTATGTTTGACGTATCAGCCGGGGTTTGAAAAGAAGAAAACGTATA
CAATGTTATGACGTGTTTTCGTTTTTGAAACCGAACCAATGACTGTCGCG
CCGTCCCACACGACAATGCAAGAACTTCCACCCTCGATACCAGCCACTAT
CCCAACCGCTGTCTAGCTTGTACCGCGAACCGCCTGAGTCTAACCTCCAC
TACGCGCCTTGCTGTGTGTTTTTTTTTTTTTTTTGAAGGAATGTTCCCCA
TTTTTTTGTTTTTCTTTCCCCTCTGTTATTAATAGTACAGAAAGTCAAAA
GTGCGTTGCGTAATGTAGTACTGATACCGTGGCGTAGTGGATCCGTAGGG
AGGTGTTACGATCCTTTAGTAGTGGGTTCAAATCTCCCTGCTCTTTTTTT
TTTGTTTTTGAAAAAGGAATGTTCGCTCTCTCCTAAAAACACTTGTGAAC
GGAGCTCGCTATCGCTCGCCGGAAGGATCTCTGTAAGCTAGACAGACCCC
ACCGTGGCGTGGACGGTGCTCGCTGTCGCTCGCCGGAAGGATCTGTGTAG
GCTAGGCGGACCCCACCGCTGTGGCGTGGACGGAGCTCGCTATCGCTCGC
CGGAAGGATCGGCGCACGGTTTTTTGCGGGGTGTTTTTTGCGTGCTTTTT
TTTTCCATCACCGTCGATTAGTAACTCGCTTCGCTCGTAGTAACAGCAAC
TGCCAGGGCCGCCGTAGCAGCCGCGGACGAGCACTACGATAACCTTTGTA
TCTAACCTGTAAACTACCCGACCACCTGTGTGTGGACTGCTAATAGTATT
AATAGTATTAATAGCTAGATGGGATGGATGGCGTTGTTAGTTGCTATGTT
TGCTACCCGAAAATTTCAAACTAGAGGGCTAGAGACTGGAATGGCCAATA
TTCCACGGACCTCCGTCTCATCTTTGGTTTTGGTTTTCTCGTTTATTCTT
TATTCGCCCAGCCCATAGCGGGGCACATACAAAAAAGGAAATACAGAAAT
AATTGCCGCGGAAATAAAACAAAAATTTTGCGTTTCATTTTTGTATTTTT
GTGGTCCCATAGCGGTTGGCCTATAAGGTAGCACCAGACGAAAATGACTA
CTGATTACACCATGTGGGGGACAAGATAAAAACAAACTGTCTGGAGTTAC
TAAGAGCTTGTTGTAATTATCTGCACGAGTACCTGTTGTGCATGCAGAAC
GTGGGATGTTCAAATTAGCTCCTCTGTTGTTTCTACGACAGAGCACCTGG
ATCCTTCGGGACTTGCAAGTACTTGTAGTGCTCTGGTCATACCCGGGGTA
CGTTACTGTTAGAGCCTTATAGAGCAAAGTTTGTGTTTTCGAACCGGGCA
TTCCGCTTGAGATCGCGCCGGCCGTTTGATCGCGATGCAAGCTCATAGCA
CTCCCTACACGACACGCCCAACCAATGATATGATTTGAATTTTGCTCTCT
CTCACGCTTCCTTCCCCAACAATATACTGTACACAACTGTACTGTACATG
AATAAGAAAAGGACCGCTTGTCTCTTGGGATCAGACCTCACAAGTTCCAC
CCTGGTCTGACTGCCACGACAGGCACTACGCAGGCAGCACAAGCGATGAC
ATTCCTATCTCAAGAGGTAACGAGGCTCTCGTCTAGAGAGCCGATGCCTC
CTGTTTCGTCGAACAAGTAGTACAACAGTAGTACGATTATGTAACGTCTC
TGTCGACTGCAAATCTTCCGCGTGTTTAGTGCGAAAGCTCCTATTGGCGA
CTTCAGCGTCTCCGGCAAAGATTTTGTCGCGATTTGGATCCCTGTTTGTT
TCAATAGCGGGTTGTCAGATAGGACCCGTTGACCTTCGTTCCTCTTTGCG
ACCACACGTACAGTAACGGATTGGCAACCGCGTTGATAACGTACTTGGTA
CGGTTGAGGCCCGATCGGTCAATGTGAACAACACACACACACACACACCA
CAAACACACACACTTCCTTTTCATTTCCGTGCTTTTTGCGCGGTAGCCCG
AAATTTTAGGAAGCACCCAACTTACGTACAGTCCACCACGGGAAACAGAC
CCTCTGAAAGTGAAACTAACGATCCAGGCCCAACATGGTGAAATCTTCCT
GCGATTCCCTGTACGTCAGGAAATTTGAGTAGTCGCTACAATGTAATATG
AGGTTTGGGATTTGACGATGCGAGGAAATCGTCACACTTAAAAGCTCAAA
CACAGTAGAGTATTAATCGTCGAAAGTGGCACCCGGCACGGTGTACGTGT
GCACGCGAAGGGTAAAGCGCGTGGACTTGGGGGATGGTGTACGTCCCCGG
GGACGAACGTTTACGTGCGCGCGTGGGACAATGTACACTAGCGTGAGGGA
CGGTTCTCACGCGCGGGCCAGACGCGAGTTTTTATTTTCGCGCGCGCAAG
GGTTACACTTTTTGTAGGGTACGTGCGCGCGATTGATGGACGGTCGCTCC
ATTCTGAAAATCACATCTAACGGGCGAATCCATGGCTTCCACCAATAATC
ATCCTGAAAATCACATCTATCGGGCTCGCGATTCTTGGCCTGACGGCGGA
GAAATTGACTCCCAGCACTTCCTCACATGGATGTGAATATACCATGATTG
CTTGAAATATGAAGGCAGCCGCCGATAAATTTTCAAGCCTCTGGGGATCA
ACTCTTTACCACACGCCGGTACTTTCAACATGCCTATATAACGCAAGTCC
GGCAAAAAGAGCAAGTTTTTACTGGCGCCCGCCCGCCTCAGCCCCTCCCC
CTCGCCAAGCATTCCACGCCTTGGACGTATCCAATTCAATCTGCACAGTA
CTCCGGGATGACGTCTTCATAGAGTACAACATGAAAAAAGCCTCTCAATA
GCTTACGGGGTATATCTTCCCTGAAGAGTTGTGGTGGAAAGTAAAGTGTC
CCCTCGTAGTTTTTTTTTACCCCCGTACGGAAGGTCTAACCACCACCCCC
CCCCCCCCCCCACCCCACGCCCCCCCCACGCCCGACCCAATTCAGAAAGG
ATCTGGCCGCGCCACAAGAGCAGCCGATCTGAGAATCTCCCTCGATCTAG
AAAAGATGGTCGCGTGCGCCTTCGGAGCAAGCTGTGATAAGGTGGCTAGG
TTTGCGGCCACTGGTACGGAGGAGCCAGAGTTCTGCTTCGAACACGCGTA
TGCGGGGATGGTCAACGTTACCAGCAAGAGGCGCAGCCGCAAGCCATTCG
CCAGAACCGCGAGCCCATCAGACGTTGCTGGCAGCCGTGATCTAAGCACG
GAGGACACGGTCGGCGACACGGCCAGAAAGCCTGGCGGGAGCGCGGACTG
CTCCAACACCCCGACTCACGAGACGCCAGGCGGCAGCGAGAAGCGGGAGT
TCTGCGCGGAGTACACGATCGACGGCGCTCGAGCCGGGGTAGTCAACGTC
ACGAGCGAAGCCGCGAGCCCATCAGACATTTCCGGCGGTCGCAAGGAAGA
TCCTGGTACAGAGCGCACGGCCAGCAGCGCGGTCGACATGCCTGACGGGA
GGTGTTCGAGCGCGGGCTTCTCCAAGCCTCCTAGATACGAGATGCCAGAT
AGCAGCAAGAAGCGGAAGATCTGCGCGGAACACGCGGTCGACGGCGCTCG
TGCCAGGTTGGTCGACGTCAAGAGCAAACCCGTGAGCCCATCAGACGTTG
CGGGCAGTCGCGGGGGAGATCCCAACGCAGATCACTCGGTCGGCATCGCG
GTCAACGTGTCTGACGGGAGGTGTTCGAGAACGGGCTGCTCCAAAACCCC
TACGCACGGTTCGCCGGGCAGCGAGAAGCGGGAGTTCTGTGCGCGGCACG
CGGTCTACGGCATGGTCAACGTGTCAGTCAACAGGCAGTGCGGGCGCGTG
GGTTGCCTCAAAATCCCCACCCACCGCAAGCCAGGCCGGAAAAGGAAACA
ATTCTGCGAGGAGCACGCGGTCGACGGCATGATCAGCGCGTTTCACAACC
AGAGGTGCTCGTGGGCCGGCTGCTCCAAGGGCTCACTCTACGGGATGCCG
AGCACGAAAAAGCGGGAGTTTTGCGCAGAGCACGCGGTCGACGGCATGGT
CAACATGGTTCACAAGAGGTGCTCCAGCGCGGGGTGCCCGAAGATCTCCA
GCTACGGCATGCCGAGCGACCGGAAGCGCGAGTTCTGCGTAGAGCACATG
GTCGACGGCATGATCAACCTGTCCGTCAGGCAATGCGCGCACGTGAGCTG
CATCAAATTTCCCACTTACGGCGTGCCAGGCAGCCAGAGACCAGAGTTCT
GCGTCACCCACGCGGCCGACGGCATGATCAACCTGTCGAGCAGGAGATGC
TCCCGGCAGGGCTGCTCTAAAATCCCCAGCTACGGCATGCCAGGCAGCAA
GAAGCGGGAGGTCTGCGCTCGGCACATGGTCTACGGCATGGTCAACATGA
CGCTGAAGCGGTGTGCTCAGAGGGGCTGCAGCAAGATTCCGAGCGACGGG
ATGGTGGGCAGCAAGAGGGCAAAGTTCTGCCTCGAGCACGAAGCCGAGGG
ACTGATGCGCTTGCCGCTCAGAAAGGTACCTGGCGGTAAGAGATCCTGGA
AAGCAGGCCAAAAAGCTAGGAGTCCTTCCGAGCCTGCGGGCGCGGTTTCC
AAGGTCGAAGTGGTCAAGCTGGAGGTAACGATGTCGGTGTAGCGGCGGCT
GTTGTCGCGCCCCACATGGCCCAAATTTGTCGCCATGTACACGAAAGAGG
GAAAACGCCAAATATATCGCGACGAGGCTGTAACTAGTTTTGTTTGTCTG
TCGCCGCCGCGCCGTAGACCTATGGCGCCGGGCCGACGATGATTTGAGGG
AGAGCGCGTACGGACGCCGCATGCGAGGCTTTGCTTTGGGATGCGGACTA
TAACTCTTTTGTGTGTAGCTTTATGCGGGGATTGGACTGGAATGGAATTT
GACGCTTGCACGTTACCGGCGGCTTCAGCGAAAAAAGCAGCAGCGTCGAC
TTTGGTATCGTGCGGCCATATGCCGGGTGTTCCGCACAGCGTACACGGAC
TTGTTTTACCCAATGAAATGCTATTGTATACTGGTACAATGCACAGGGGC
GTGCCGATAGTTGTATAATGTCTGTGTAGGGCTTTGTTAATAGCTGGCGT
ATGTTTCTTCTCGCGCACGGCGCACCACCAAAGTGTGTTTTTTACTTACA
GTTAATATTAATACGTAAGTGATGATTTAGAGGGGATAAAAGCGAAATAT
TTTTTTGTTGATCCTTTTGTTTTTAGTTTTGCCCCAGAAAAGAGGTTAAT
AATAACAACGTCTGGCATAATATACATAATCTAGAGAGGATAGTTTCGCG
TACAAGTAGAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig88:393990..400850-

>mRNA_A-nodosum_M_contig88.46.1 ID=mRNA_A-nodosum_M_contig88.46.1|Name=mRNA_A-nodosum_M_contig88.46.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1587bp|location=Sequence derived from alignment at A-nodosum_M_contig88:393990..400850- (Ascophyllum nodosum dioecious)
ATGGTCGCGTGCGCCTTCGGAGCAAGCTGTGATAAGGTGGCTAGGTTTGC
GGCCACTGGTACGGAGGAGCCAGAGTTCTGCTTCGAACACGCGTATGCGG
GGATGGTCAACGTTACCAGCAAGAGGCGCAGCCGCAAGCCATTCGCCAGA
ACCGCGAGCCCATCAGACGTTGCTGGCAGCCGTGATCTAAGCACGGAGGA
CACGGTCGGCGACACGGCCAGAAAGCCTGGCGGGAGCGCGGACTGCTCCA
ACACCCCGACTCACGAGACGCCAGGCGGCAGCGAGAAGCGGGAGTTCTGC
GCGGAGTACACGATCGACGGCGCTCGAGCCGGGGTAGTCAACGTCACGAG
CGAAGCCGCGAGCCCATCAGACATTTCCGGCGGTCGCAAGGAAGATCCTG
GTACAGAGCGCACGGCCAGCAGCGCGGTCGACATGCCTGACGGGAGGTGT
TCGAGCGCGGGCTTCTCCAAGCCTCCTAGATACGAGATGCCAGATAGCAG
CAAGAAGCGGAAGATCTGCGCGGAACACGCGGTCGACGGCGCTCGTGCCA
GGTTGGTCGACGTCAAGAGCAAACCCGTGAGCCCATCAGACGTTGCGGGC
AGTCGCGGGGGAGATCCCAACGCAGATCACTCGGTCGGCATCGCGGTCAA
CGTGTCTGACGGGAGGTGTTCGAGAACGGGCTGCTCCAAAACCCCTACGC
ACGGTTCGCCGGGCAGCGAGAAGCGGGAGTTCTGTGCGCGGCACGCGGTC
TACGGCATGGTCAACGTGTCAGTCAACAGGCAGTGCGGGCGCGTGGGTTG
CCTCAAAATCCCCACCCACCGCAAGCCAGGCCGGAAAAGGAAACAATTCT
GCGAGGAGCACGCGGTCGACGGCATGATCAGCGCGTTTCACAACCAGAGG
TGCTCGTGGGCCGGCTGCTCCAAGGGCTCACTCTACGGGATGCCGAGCAC
GAAAAAGCGGGAGTTTTGCGCAGAGCACGCGGTCGACGGCATGGTCAACA
TGGTTCACAAGAGGTGCTCCAGCGCGGGGTGCCCGAAGATCTCCAGCTAC
GGCATGCCGAGCGACCGGAAGCGCGAGTTCTGCGTAGAGCACATGGTCGA
CGGCATGATCAACCTGTCCGTCAGGCAATGCGCGCACGTGAGCTGCATCA
AATTTCCCACTTACGGCGTGCCAGGCAGCCAGAGACCAGAGTTCTGCGTC
ACCCACGCGGCCGACGGCATGATCAACCTGTCGAGCAGGAGATGCTCCCG
GCAGGGCTGCTCTAAAATCCCCAGCTACGGCATGCCAGGCAGCAAGAAGC
GGGAGGTCTGCGCTCGGCACATGGTCTACGGCATGGTCAACATGACGCTG
AAGCGGTGTGCTCAGAGGGGCTGCAGCAAGATTCCGAGCGACGGGATGGT
GGGCAGCAAGAGGGCAAAGTTCTGCCTCGAGCACGAAGCCGAGGGACTGA
TGCGCTTGCCGCTCAGAAAGGTACCTGGCGGTAAGAGATCCTGGAAAGCA
GGCCAAAAAGCTAGGAGTCCTTCCGAGCCTGCGGGCGCGGTTTCCAAGGT
CGAAGTGGTCAAGCTGGAGGTAACGATGTCGGTGTAG
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