mRNA_A-nodosum_M_contig88.30.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig88.30.1
Unique NamemRNA_A-nodosum_M_contig88.30.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig88.30.1 vs. uniprot
Match: A0A6H5KYY0_9PHAE (Response regulatory domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY0_9PHAE)

HSP 1 Score: 457 bits (1177), Expect = 5.860e-144
Identity = 231/355 (65.07%), Postives = 270/355 (76.06%), Query Frame = 1
Query:  103 SPAWVWVDVGMAWAMAPLAGGNLQLSLWGSIVPSWLSITVALGYGLCAEEVALNRIETAAPLGLLAMVVVCGLCPLAIGYQVMWEHAKDRITMMDLADEIVETDKRGRHARFSELLLRHLVTEPALHVLAAGVKELFNDAKTFVIHSDALQQIKDGIDTFADHGETALGRLRSGAPDLPPPAFELADMEAILDACLHTTAYLAVSRDHHAVQLDLKVSPHVAKMVKTFRLWLSQMTRACLIHSLHPEEKSTVTLRVHYARPGLLRVGVEAIWRVRA--TGKGGK---GLASRQR-----LTGWDNEMPEAAWWVRAAALSLGGEADYSFSTHTPGFHELWFTLPAENVSDESKRE 1137
            +PAW WVDVG+AWA+AP AGG+LQLSLWGSIVPSWL +TVAL YGL AEEVAL+       L L A +VVCGL  LA+GYQV+WE A+D  T+M L D I   D R R A FSELLLRHLVTEP+LHVL AGVKELF DA+ FV+HSDAL+QI+DG+   A++GE AL  L++GA +LP P  E ADME ILDACL TTAYLAVSRDHH VQLDL+V+ +V K VK +RLWLSQMTRACLIH+LHP+E  +V LRV YARPGL+RVG+EA+WRV    TG GG    G ++  R     L+GWD +MP A WWVRAAAL+LGGEADY  S    GFHELWFT+PAENV D+   E
Sbjct:   27 TPAWAWVDVGIAWAIAPAAGGSLQLSLWGSIVPSWLCVTVALAYGLRAEEVALDGDGADGALILFASLVVCGLSALAVGYQVLWEQARDARTLMALEDSIDFEDHRRRQAAFSELLLRHLVTEPSLHVLEAGVKELFKDARIFVLHSDALEQIQDGVSLLAEYGEKALSGLKNGASELPTPVLEKADMEEILDACLRTTAYLAVSRDHHKVQLDLRVAANVDKSVKIYRLWLSQMTRACLIHALHPDEDDSVILRVSYARPGLMRVGIEAVWRVAGSRTGSGGSWGDGTSADHREAPRVLSGWDRDMPAAVWWVRAAALALGGEADYDRSRDREGFHELWFTIPAENVPDDDDLE 381          
BLAST of mRNA_A-nodosum_M_contig88.30.1 vs. uniprot
Match: D7FY83_ECTSI (Response regulatory domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY83_ECTSI)

HSP 1 Score: 332 bits (851), Expect = 2.690e-99
Identity = 167/262 (63.74%), Postives = 198/262 (75.57%), Query Frame = 1
Query:  382 MDLADEIVETDKRGRHARFSELLLRHLVTEPALHVLAAGVKELFNDAKTFVIHSDALQQIKDGIDTFADHGETALGRLRSGAPDLPPPAFELADMEAILDACLHTTAYLAVSRDHHAVQLDLKVSPHVAKMVKTFRLWLSQMTRACLIHSLHPEEKSTVTLRVHYARPGLLRVGVEAIWRVRATGKGGKGL-----ASRQR-----LTGWDNEMPEAAWWVRAAALSLGGEADYSFSTHTPGFHELWFTLPAENVSDESKRE 1137
            M L D +   D R R + FSELLLRHLVTEP+LHVL AGVKELF DA+ FV+HSDAL+QI+DG+   A++GE AL  L++GA +LP P  E ADME ILDACL TTAYLAVSRDHH VQLDL+V+  V K VKT+RLWLSQMTRACLIH+LHP+E  +V LRV YARPGL+RVG+EA+WRV  + +GG        ++ QR     L+GWD +MP AAWWVRAAAL+LGGEADY  S    GFHELWFT+PAENV D+   E
Sbjct:    1 MALEDSMDFEDHRRRQSAFSELLLRHLVTEPSLHVLEAGVKELFKDARIFVMHSDALEQIQDGVSLLAEYGEKALSGLKNGASELPTPVLEKADMEEILDACLRTTAYLAVSRDHHKVQLDLRVAADVDKSVKTYRLWLSQMTRACLIHALHPDEDDSVILRVSYARPGLMRVGIEAVWRVAGSREGGXXXXXXXTSADQREAPRVLSGWDRDMPAAAWWVRAAALALGGEADYDRSRDREGFHELWFTIPAENVPDDDDLE 262          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig88.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYY0_9PHAE5.860e-14465.07Response regulatory domain-containing protein n=1 ... [more]
D7FY83_ECTSI2.690e-9963.74Response regulatory domain-containing protein n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig88contigA-nodosum_M_contig88:256737..266938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1777
Hectar predicted targeting categoryother localisation
Exons10
Ec32 ortholog descriptionMembrane-localised response receiver domain protein
Ec32 orthologEc-24_003450.1
Cds size1776
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig88.30.1prot_A-nodosum_M_contig88.30.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig88 256737..266938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870283.1978745-CDS-A-nodosum_M_contig88:256736..2569881680870283.1978745-CDS-A-nodosum_M_contig88:256736..256988Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 256737..256988 +
1680870283.2119312-CDS-A-nodosum_M_contig88:257587..2576801680870283.2119312-CDS-A-nodosum_M_contig88:257587..257680Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 257588..257680 +
1680870283.2232883-CDS-A-nodosum_M_contig88:258415..2585391680870283.2232883-CDS-A-nodosum_M_contig88:258415..258539Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 258416..258539 +
1680870283.234817-CDS-A-nodosum_M_contig88:259728..2598761680870283.234817-CDS-A-nodosum_M_contig88:259728..259876Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 259729..259876 +
1680870283.2476087-CDS-A-nodosum_M_contig88:260238..2603531680870283.2476087-CDS-A-nodosum_M_contig88:260238..260353Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 260239..260353 +
1680870283.2625573-CDS-A-nodosum_M_contig88:260594..2606661680870283.2625573-CDS-A-nodosum_M_contig88:260594..260666Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 260595..260666 +
1680870283.2744424-CDS-A-nodosum_M_contig88:264147..2643421680870283.2744424-CDS-A-nodosum_M_contig88:264147..264342Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 264148..264342 +
1680870283.285433-CDS-A-nodosum_M_contig88:265160..2656011680870283.285433-CDS-A-nodosum_M_contig88:265160..265601Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 265161..265601 +
1680870283.2985911-CDS-A-nodosum_M_contig88:266090..2663751680870283.2985911-CDS-A-nodosum_M_contig88:266090..266375Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 266091..266375 +
1680870283.309359-CDS-A-nodosum_M_contig88:266887..2669381680870283.309359-CDS-A-nodosum_M_contig88:266887..266938Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 266888..266938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig88.30.1

>prot_A-nodosum_M_contig88.30.1 ID=prot_A-nodosum_M_contig88.30.1|Name=mRNA_A-nodosum_M_contig88.30.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=592bp
VELSGSTLAVSCNSTSTFGDECSGLAKNPLPLKASPAWVWVDVGMAWAMA
PLAGGNLQLSLWGSIVPSWLSITVALGYGLCAEEVALNRIETAAPLGLLA
MVVVCGLCPLAIGYQVMWEHAKDRITMMDLADEIVETDKRGRHARFSELL
LRHLVTEPALHVLAAGVKELFNDAKTFVIHSDALQQIKDGIDTFADHGET
ALGRLRSGAPDLPPPAFELADMEAILDACLHTTAYLAVSRDHHAVQLDLK
VSPHVAKMVKTFRLWLSQMTRACLIHSLHPEEKSTVTLRVHYARPGLLRV
GVEAIWRVRATGKGGKGLASRQRLTGWDNEMPEAAWWVRAAALSLGGEAD
YSFSTHTPGFHELWFTLPAENVSDESKREFGEREADEISVSEQLSLPRPE
QRSPGQQTADSDAPLQTDDESEDLKDASSFSNDISMSSAKPGGGRGRIGV
VRYGLPRPGAVVVASSRKRSLSALSKRRPKAQPQESFARSATRIAKKRSR
VGADVARQPRRVHDRSRSSSAPPPRNRAARTGEGGGARERVRRHSAKDPG
GTGRASDGSEIDSSDISDLSAPNLKILFVDPEGLLRWVLPRL
back to top

mRNA from alignment at A-nodosum_M_contig88:256737..266938+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig88.30.1 ID=mRNA_A-nodosum_M_contig88.30.1|Name=mRNA_A-nodosum_M_contig88.30.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=10202bp|location=Sequence derived from alignment at A-nodosum_M_contig88:256737..266938+ (Ascophyllum nodosum dioecious)
GTGGAGCTGAGCGGTTCCACCCTCGCGGTTAGCTGCAACAGCACTTCTAC CTTCGGAGATGAATGTTCCGGGCTAGCCAAAAATCCTCTCCCTCTCAAAG CCTCGCCCGCTTGGGTGTGGGTGGACGTAGGTATGGCGTGGGCTATGGCG CCACTTGCGGGTGGGAATCTTCAGCTCAGCTTGTGGGGATCGATCGTACC GAGTTGGCTGAGCATTACGGTGGCCCTCGGGTACGGCTTGTGTGCCGAGG AGGTGCGTTAAAACGAGAAGGGTTTTCGCGGAGGGCGGTCGACTAAGAGC CAACCACTACGCAGGTCCTTATCTGTGTACACCCTGTGTCCAGCATGTCT CCACCCCTAAGGAAGAGTAAGTAAGTTTAATCGTCGTACAGTAGTTCTTA TATCATTCGCAGCACCAACTCCTACTATAACCTCTGTATCAGCAACCACG GCACTCTTTGTCACATGGTTGATCCTCATGGCTCGTGGGTTCCTCGCGCG GAAGCGCAGCACGTAGAACACGGAGGCCGAAAAGTTTCAGAACCGAATCC GGATCCTTTTTTTTGTGAAGGCGCACGTTCCTACGCCAATGCTCTGTGAT AAATATTCGTGGCTCCACGGTCGAGTATCTTCTTCTTTGACCGAATACGA AGATAATTCCAGACGCCGCAGTCGAAATACGTTTCGCGACGACCTTGGTC ACCGGTCGCTCAGGACTATCTATGACTTCGGTGCAGGTTTCCGCTGATAT TGAAGTAGCTACGCTACCTCTCGCCTCTGTTCGAAAAACTGTTAGTAGCA TCATAGTTTTTCTGCTAACGGAACAACGCATCCAAAACACGTACAACTCA GGTCGCGTTGAACAGGATAGAGACGGCCGCTCCCCTGGGGTTGTTGGCGA TGGTGGTGGTATGCGGACTGTGTCCTCTGGCCATCGGTTACCAGGTATGT ATAACGCGCCGCCGGATGACCGCCGTCCGCGAGCTATGGTATCCGGACGC ACGATCGATCCGTAGAAATCCTTAACTTAGTCGATCGAGACTGAGGAAAA GGGGGGCGTCACGTACTGAAGGGAAGAAAAACGTTGCGTTAGCATAAATT GAAGGCGTCGGGGGTGGCGCCCTTGACACAGAATCTGGCTTGTAAGTACG TGCTTGTAGTCTTCCTGGGCTGCCATGGGGAAACGGGTGCACGGAAGATC CTGTTCTCTGGTTGTCCTTGAGCCGTGGCCACCTGGGATTGACATGCACT AGGTAGCCAATCTGTCCGGTAGTAGTAACCGAACGGTTTGTAAGTGTTGT GGGATGGACTTTTGCCGGGCATTCCTTGTGGAAGTACTCGCAAAAAGGAA GATGCACGCACACGGGATGCGCTTTCATTTGATTCGTGTCGTTGTCGGGA CCTGGGTGCGTGGCGGTCTTTGCTGTACACACTTAAGGCGCTGTGGGGAG GGGGGGTGCGTATAGTATTGTAGCGGGCATGGCGGGGGGGGTGTTGCAGT TCGTTGTATGCTTGTTTTCTCCGATAAAACGCTTTTGCTGGGACGTTCTC GGAAGCAACGTGGTGGAAGCGCCGCCGAACAATATGAGGCTTAGCTCTGT CAGGCCTTGTTCAATTAGCCTTACCGTGAGTAGAGTACAATGTAGCACAC GTGCGCTCGCCCCCCTTCTTTGCGTTCAGGTGATGTGGGAGCATGCCAAG GACAGAATCACGATGATGGATCTGGCAGACGAGATAGTGGAGACAGACAA GCGCGGTCGACATGCGCGCTTCTCGGAGCTACTTCTGCGGCACCTCGTCA CCGGCAAGGGCAAGGAGTCTGACTTAGATTTTGGTTTGTACAAAAGTACG AAGTACAAACAAACATCACAGTTTGCCGTCAGGCAACGCCGTGGAGCTGT AAAATGTTAGAGATGGAGGTTCTGCTGAAATCGCACACCTACGTGGGACA CGAGGTCCTCGATCGAACACGAAAAACAGACCCAAGAAACCATATGGGGA GAGCTGCGCCCGCCTTGCTGAGCGAACTATTTATTTCTTGTCCCCTTTTC ACGGCACCCGACCGGCACGTTTGACGCGATCTGCAACAGTGGCACGATTA CTCGTCGGTGCTGCCCCTATTTAAAAGTCCATGTGAAAATTAAAGCAGAA TGTACCGGGGCAGGCCCTTGTCTTGGCACATAAAACAAAAGGAGAAGAAT GCCCCCGCGATCATGGGCTAAATCTTAGCTTCGACGACTGTAGCACACCA TGAGATAGCATCCCACATCCACGAGCGAGTGGGAGTACGCGAGGTCATTT ACCTTAGAGCAAAAACATCTTGACCCCAACCCCACCCCCTCTAATCCTGG GGAAGAGGTTCCTTTCCCTATGTTTTTCTACGATACAGAGGGGAGCGATG TCTCTGAAAAACTGCGAAATCGCACGCGTTTTTGCTGGGAGAGAGAGTCT TGCGGGGAGATACTTTTCCTCGCTGCACTTCTCTATTTGTTTACTCACGG CGTAACGTAGAGAGTGCAGCTTTAGGGGGGGGGATTCTTCCTCCAGGCTA CACGAGGGGGGGGCGGCGGGGAGGGGGGAGGAGGGGTTCGTACGGAGTTA TTTTTTAACTTACAAGAGATAGCACGAGTCGGTTTTGCGCTGCATGTACC TCGGTTATCTCTCGGTGCCACATGCGATTAGGATCTTCGGTCAGCGGGCC ACCCTATGGCGGTGAATTACCCGCTTGGTGGTGTTCCGCCTGTGGCTAGT CTACGGGGCATCACAAGACGCCCTTCACGAAGAACGTTTCTTCCCTCCTT CACGACGACGTTTGCTTTTTCGTCTCGTTTATCAGGCCTGGCGGTGCATT GCAAAAGATAACGGCGTTCCACATTCCTTCGCATATGTAGTGAATGACCT CGACCACTCTCCCCCCCCTCCTCCGCCCGCCAACCTCGGGGTGGTCACGT TTGCTCCTCCTCCTTCCCCCTGCATTGTACTAACTGCAACAGAACCAGCG CTACATGTCCTGGCCGCGGGGGTGAAGGAGCTTTTCAACGACGCCAAAAC GTTCGTAATCCACAGCGATGCCTTGCAGCAGATCAAGGACGGAATCGACA CGTTCGCGGACCACGGAGAGACGGCCCTCGGGCGTTTGAGGTGCCGCCGA TCCGAAAAATTTCGGACGAGAGCCAAGCCAGCGTGAACATGTGTGCTCTT AGCACACCACGCTTATTTGCTTCCTTGCGTGTTTAGTAGCAAGTGTACTC TTGTTGGTAAGCTGACCGCTGTTGCGTGCATCCGCGTATCAACTACTTAA ACGGGTGGCTTCCTTTTCTTGTAAGAAGTAATACTTGCGCATGCGTCGTC TTCTTCGCGCCTGACGTGGGCTACCTGCAAGACGTTAAGAGATGTGACCA CGAGGCGCCAGGTCGATGGCTTCTTGCATTGGTTCTCTGGGTTTCCTCTT TTTGCTTCTGTCACACCTGTTTCTTCTGCTGTCCGCACGAACGATCGTCC AGGAGCGGCGCCCCAGACCTCCCACCGCCCGCTTTTGAGCTTGCGGACAT GGAGGCAATCCTTGACGCCTGTTTGCACACGACGGCGTACTTGGCGGTTT CGAGGGATCATCACGCGGTGCGTGGATACTATGTGCGCAATCAAACGCCA CAGGAAGCCGACATAATATATCCACCCGTATATTACACGAATGTATAGAT ATGCAGATAGACACATGGATGTAGATAGATACAGATAGAGCTATCGAGAT TGTCTAAACGGTGCAATCCTTCACCCTCAAGAATATTGTAGTACCCATCA AGAATACTACTGTATCTATAATGCACCACGCGTGACTTCTTCGTTGATTG ATTTTCAGGTTCAGTTGGACCTGAAAGTTAGCCCGCACGTGGCCAAGATG GTGAAGACGTTTCGCTTATGGCTCAGCCAGGTGGGCGCGGTCCGGCCCAG AGATCTGGCATGGCTTTCTCCGAAAACCGTAACCCAAGTAGTTCGGCTAA GCCTTCCAGCAGCACCAAACTATACTTTTTCTAGCGACTGGCCCACTGCT CTCCTCAGCATCGACGCTTAGAGTGGGAAAACTAGGTCTCGGTATGGGCG AAACGCTCCGGGGTACGAGGTCACTTTATTTGATTCCCGAACGCAAGGTT GAGGTTAAAGCATCGTCTGAGGTGCTATATATTTGAATATATAGATTATA CTGAGACAGAGGAGAATCATTAGACATGATTCTACCCGAAAGTTGTACGG GTTACACTCTTCTGTAGAGTCGTACTAAATTGTATGATGTAGCCCCACAT ATTTAATCTTTTGACGAGCACCTTGGTATATCTACGAGTACTTCCGTCCT GTGACGTCTATTGGCGTCCCATGTGTCTCCCCTTCATACTTCGTTGATAA TAATATGTTCTGTACACCATCTCAAGACTCTTGACCTTCCCTCTGGCGAA GACATACGAATGCACTAGAGTGTCCTCGGTGCCGAGGTTTTCCCTAAGAT GCCACGGAACAAGAGCAAGGTTGTCCTCGAGGGCAATGACCCTGTTCCCC AAGATGCATAACTAATGTTAGGTGGATCACACTGGAGAAATTACGTCGAA TGATGTCTGAAGCGCTGGACAAAGCTTTCGACGAGCCTACAGAGAACACG AGAAGGGGAAATCAGCGTTTAGCAGGCCTGAAGCAAGAAGCTCGGCAGTC ACGTTTCGCTATGGAGGCAGACGTAAAATCAGACACCAAGACTCACAAGC GTGCGGAGGGCGCCGCTACAGCAAATCAAGCGAAGCATGGGAATAGCTGT TCTGCAAAAAGGGCCCAAGCCGACCCGATAAGTTCGACCAGCTTCGGCAT GAAACCTGAACCCCCCGCTCTCCCTCGCAGGAATGACTTCTTGGTCGACA AAGGCGTTGCGGCGCCAAAGCCGTGTCTCTATCCCGTGAAGATTTGCACG CTAACAACCGCCGGTAACTTACTTCTAGCCGGCACAGCATCTACAGCGAT CATCTTTTACCAGCTGCCTCTTCGATTCTGCCCGACCGAGGAGACGAATT CTGGGACATCAATTCAATACGCCACGTACAGCAATTTCTGGAAGATAAAT GTTTTAGAAACAAAGTCCAGGTAAACTCTGGTGTTCGATCCTGGCGGTTC CGCAGGTTGTCTACGCACCTGCCTGTTTTTGGAAGCGTGGCACGCGTTGC TTGTGGGGAGGTTTTTGATTGGGCGCCGGATGGTACCCGAGGCTGGAGCT TTTTTTGGCAGATGGATGGCTCGGAATGTCATTTTCCAAAAAGGAGGACA AGCGATTCGTACGTATTGTGGATGATTATTGTTCCCTCAAAAGCCAAGCT GATACGGGGAACCGTCAAAAGACGGCACGAGGCTATGTGAGCTATCGGGA TCAACGGATGTCAGGGAATGCCATAGAGAGAGAAGCTTGATGGCAAGGAA CTCCATGGAGCGCTTGGTGGTGAGTGCGGTCTGGAGCCGAGAGGATCCGC TGTTTCCTGCACATCGTCAACACGGAGTCAACCCACCTTTCAACATCTAC AAGTAGAGCTATGCTGATTTTAATCACCTTTTAACATCTACAAATGGGGT AGTATGTCGATTTTAAAGGAGTGGTGTTTTGATTGATTCCTTGTACTGCT GTACTACTGTTACAGTAATACATCACATAGCGTTGTTTCTTTCCTCGCGG ACTGTGCTTTCGTACATACGGATTCGAAAGAAATTTGCGTCTCCGAGCCC GCGCATAGCCTTGTTTTCGCAGCGAGTGTTTTTCAAGGAGAGTTTTCCCC GAGAACTCCAGCAGCCATAGCTGTTCGCAGCGGGCGTTGGACTTGGAGAG GGTATTATCGCTGTTGGCCGTACGACCGCTTGTTCGTGGCGTGTCACGTG AAAAGTGTTTTCCCTTCCTTTTATCAGAGGTTGCAAAAAGTACTGTGTAA GCTTCGCCGCTGACGCAAGCTCTACCGTACAGTTGTCCGTTGTACTGAAA ATTTTATATAGCACTTAAGTAGCTCGTCGGTAGTCGCTGAGCCTGCCTGA CCACTGTGGGAAAGTTGATTGAAATGGCTGTAACTCGCTGGAGCCAGCTC TTTTTATCAGAGATCTCAAAGAGCACTGTGTAAGCTTTGTCGCTGACGCA AGCTCTACCATACAGTTGTCCGTTGTACTGAAACAATTATCTACAGCACT TGAGTAGCTCGTCGGTAGTCACTGAGCCTGCCTGACCATTGTGGGAAAGT TGATTGAAACGATTGTAACTCGCTTGAGCCAGCAGATAGCCGCAGGTGGA CTCCAATCTGCTGCCTGAAAATAAAATCACGCTTGACTTTCTCTTTTTTC CTATAGCAAACGTAATGTATACTCCTAAGTGACGACGTATATTGTTGGCC AGTATGTCGTCAGTAGTTATGCTTTGCTTCGAACGAAAGGGCCCCTTTTG GTTCATCTTGAAAACACATTGACCGAAATATGTCATTGAGGAAACGGAAG TTTGATGATCGTAAGGTGGTTCTGCCTTTCTAAAGTAGTAGGCTTCCTGT CGCACTGACCCCTTTGTCCGCTTTCGTCCTGTTCGTAACAGGAAATACCC TATATTCGATGGGATAATTCAGCTTGAAGTTTCGTCTTTGAAATGCATTC ACTAGGGAGAAATCTTCCTTACGCGCTTTAAATTTGATCGTGTACTGCCG GTGCGCACTACTTGCAATGTGGACTCCTCAAATTAAGTAGCCTTATTCTT AAACTATTTCAAGTCAGTGCAAGTAGGATCAGTTTTTCTTCATCCATTGA CGTTTTGAACGGCGCTCTTTTTTCTCTGATTCTTGACAGTTCTATTACTG TCTCGTACAACCTATGGGAGAGTATTCGAGTATATAGATTATACTGAGCC AGGGGAGAATTATTAGACATGAATCTACCCGGGAGTTGGTACGGGTTACA CCCTCCTGCAGGGTCATACTATATTGTATGATGTAGTCCCCGCATATTTA GTCTTTTGACGAGTACCTGAGTCTATCTATCAGTACTTCCGTCCTGTGAC GTCTATTGGCGTCCAATGTGTCTCTCCTTCACGCTTAGCTGATAATGATA CGTTCTTTATAACATCCCCTCAAGGCTCTTAATCTTCCCTCTGGCGAGGG TGTATGAACACTATACTCTGTACTGCAGAGCTCGGGAGACAGAGTCACGA TCAATATGAATACCCAACCCATCTTACATAGGTTTACGTATTAAGTGTAG CTCTACACGTCGAGCCATTCGTGCACACACATACAGTTACGGTAGATTTT AACATACGAAGTATTTTAACACATTGTTATATATCTATGTGTATCTAGGG CGCTCACCCAAAGGAATCGCGATCATCCCCCGACCGCCTGCCCCATTTCG GCTTTCCACAGATGACGAGAGCATGCTTGATACACTCCCTGCATCCAGAA GAGAAAAGTACAGTGACGCTACGGGTTCACTACGCGCGACCGGGGCTTTT GAGGGTGGGGGTCGAGGCGATATGGAGGGTGAGGGCGACCGGCAAGGGAG GCAAGGGGCTCGCCAGCCGCCAGCGGCTTACCGGTTGGGACAACGAAATG CCCGAAGTGAGGGTTGCACATTATTTCATTTGGATCGATGCACTCCAGGA GGCGGGCCGGTTCCTGGTGGTAGAGCTGAACTCAAAAGAAATACTAGGAG TCCCACACGGACTCACTGCACTGTTTTTAATACACACTGCGATGTATAGT GTTGTTTCTCATCTGTTTGTGTTTTGTCTCGGTTTTTTGGGGGGGACAGA GACCCCCCCCCCCAATTAAAAAAATCAGATATAGGGCAGCATTTACTCAC AGATCGCACTGCCTCGAATAAAAAGCTCATGAGGAGGAAGGGTTCGCGAC CCTGAGGCTTGATGTCGAATCGCACAATAGAAGTGTAGAACATCAGTTCC CCGTTTAGGGGTCGAATCCCTCCCTCCCGGGGAGAATGTTACTACTTCCT TGCATTACATGCCAGATAATTTTGCATAGAGTTCGTTCCACTAACGAATA ATAAAATCTGCCTCTTTGAGAAAACATGATGATATCACCCCACCTCGGGG AGAGATATGCAGCATTCCCCGCCCATCCTTTTTCGAAGAAAATCTGAACG CATCTAGACCTTCTGAGCATCCTCCAGACAGGGGGGAAAAATCTGGGATT ATAGGCTGAAAAGACAAAACCTCTTCATGGCATTTAATCGGGTCCCCCGA TGGTAGTAACAAAGGGCCAACAGTATCATGTCGGGGTCGGGGAGAAAGTG TTGAACGGCCTCATTTATATAGTATATATAACATCGAACGGTGCTCGTGT CCGAAGTACGGAAGACGCTACGACTGCACCTCGGTTGCTGCCGCCCGCAC GGATTTTTCCTTTCCTCGTTTCAGGCGGCGTGGTGGGTACGTGCCGCGGC CCTGTCGCTCGGCGGCGAGGCTGACTACAGCTTCTCGACGCACACGCCAG GTTTCCACGAGCTCTGGTTCACGCTTCCCGCAGAGAACGTGTCCGACGAG TCAAAAAGAGAGTTTGGAGAACGCGAAGCCGACGAAATCAGTGTTTCTGA ACAGCTGAGCCTACCCCGACCGGAGCAGCGATCGCCGGGACAGCAGACTG CGGACAGCGACGCTCCACTGCAAACGGACGATGAGAGCGAGGATTTGAAG GACGCGTCGTCTTTCTCGAATGATATTTCAATGAGTTCGGCGAAGCCAGG GGGAGGGAGGGGGCGCATCGGGGTGGTGAGATACGGACTCCCTCGTCCCG GGGCCGTTGTAGTGGCATCCTCAAGAAAGCGGTCGCTGTCGGCGTTGTCG AAGCGCAGACCCAAGGTGGAGACGAAGGGGCAAGAAGGTTATCCTACCTG TAGAGACCTGGGAAAGTGCCGACGCGTTGTAACTGTCGGTACAGTAGACT ATCTGTAACGATAGGTACGCTCTGCGTTAAGTCCGAAGGCCCAATGGCAA AAAAGCGGGTGAAACCATATTTTTCGTGATGTCGTCTCGAACTATCCTTA CCTTCACCCGCTCACTCCTCGGTTCTGGTCTGCAGTAAAGCAGTTTCAAA TCATCGTAAGGAGATGTTTGCCGTGAGTAAACGGCGTATCAGACTCATTC ACGCCGTGGTATGTCCTCTTGAGTAACGCGGAAGCTCCACCGTTCGCAGG CCCTTACCCCTTCTAACACGCACGCACGCGAACACACACATGCTATGGAC GGGTGCATGTAGCTGGGACAGCGTAGCCACAACAAAGTCCGCGCAGCACG CGCCCCTTACTCGTAAAGAACAACGCTCATACGCGCGTGAAAATACAACC CCAGGCGCAGCCACAAGAATCCTTCGCTCGGAGCGCGACCCGGATCGCTA AAAAGAGATCAAGGGTGGGAGCTGACGTCGCCAGGCAACCCCGGAGGGTT CACGATCGCTCCCGGTCGTCCAGCGCCCCACCCCCGCGAAATCGTGCCGC CCGAACGGGCGAGGGAGGTGGTGCACGCGAAAGAGTTCGTCGCCATTCCG CCAAAGATCCCGGTGGCACCGGGCGGGCGTCGGATGGAAGCGAGATTGAC AGCAGCGATATATCCGACTTGAGCGCCCCAAACCTTAAGGTGAAAGATCG CTTTCGGCACGGACGGAAAAGACGACGCGTTCCGATCGAGGACTTTTATT ACATGTGGTCGTGAAGGAGAAGCGCTGACAACATTGTACCTGTCGCGCCT GTCCGGCCGAAACACTCCGATTCGGAGCGTATCAGAGCGCAAGCGTTCTT GTTGTGTTTTTTTGTACTTTCTGTTACAACGATATCTGCATAACTTGAGC CGGTACTAAAATTCTCTATTCCTTTTGCTTTTTAGAGGTTTTGATGTTTG TGTGATTTTCGTTTTTTTTTCGGCGATCTTTGCAATTGTAGGAGTCGGTC TATACGTTTTCCACGGGGGGCAGAGGGGGCGAAGGGTTCAGGTATAGCTT CATCTGGTGGAGCCGTGCGCTGTTTCATGCATGCCGAACGCCAAACTTTC AACTGAGAAAATCACCACGATCACCCCTCGTATGCGCCCAGGATGGGAAA AGCTGTTTACCATTACATTTTACTTGTTGCATCAATTCCTTCTTGGCGCA GATTTTGTTCGTGGACCCCGAGGGACTGCTAAGATGGGTTCTGCCTCGTC TG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig88:256737..266938+

>mRNA_A-nodosum_M_contig88.30.1 ID=mRNA_A-nodosum_M_contig88.30.1|Name=mRNA_A-nodosum_M_contig88.30.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1776bp|location=Sequence derived from alignment at A-nodosum_M_contig88:256737..266938+ (Ascophyllum nodosum dioecious)
GTGGAGCTGAGCGGTTCCACCCTCGCGGTTAGCTGCAACAGCACTTCTAC
CTTCGGAGATGAATGTTCCGGGCTAGCCAAAAATCCTCTCCCTCTCAAAG
CCTCGCCCGCTTGGGTGTGGGTGGACGTAGGTATGGCGTGGGCTATGGCG
CCACTTGCGGGTGGGAATCTTCAGCTCAGCTTGTGGGGATCGATCGTACC
GAGTTGGCTGAGCATTACGGTGGCCCTCGGGTACGGCTTGTGTGCCGAGG
AGGTCGCGTTGAACAGGATAGAGACGGCCGCTCCCCTGGGGTTGTTGGCG
ATGGTGGTGGTATGCGGACTGTGTCCTCTGGCCATCGGTTACCAGGTGAT
GTGGGAGCATGCCAAGGACAGAATCACGATGATGGATCTGGCAGACGAGA
TAGTGGAGACAGACAAGCGCGGTCGACATGCGCGCTTCTCGGAGCTACTT
CTGCGGCACCTCGTCACCGAACCAGCGCTACATGTCCTGGCCGCGGGGGT
GAAGGAGCTTTTCAACGACGCCAAAACGTTCGTAATCCACAGCGATGCCT
TGCAGCAGATCAAGGACGGAATCGACACGTTCGCGGACCACGGAGAGACG
GCCCTCGGGCGTTTGAGGAGCGGCGCCCCAGACCTCCCACCGCCCGCTTT
TGAGCTTGCGGACATGGAGGCAATCCTTGACGCCTGTTTGCACACGACGG
CGTACTTGGCGGTTTCGAGGGATCATCACGCGGTTCAGTTGGACCTGAAA
GTTAGCCCGCACGTGGCCAAGATGGTGAAGACGTTTCGCTTATGGCTCAG
CCAGATGACGAGAGCATGCTTGATACACTCCCTGCATCCAGAAGAGAAAA
GTACAGTGACGCTACGGGTTCACTACGCGCGACCGGGGCTTTTGAGGGTG
GGGGTCGAGGCGATATGGAGGGTGAGGGCGACCGGCAAGGGAGGCAAGGG
GCTCGCCAGCCGCCAGCGGCTTACCGGTTGGGACAACGAAATGCCCGAAG
CGGCGTGGTGGGTACGTGCCGCGGCCCTGTCGCTCGGCGGCGAGGCTGAC
TACAGCTTCTCGACGCACACGCCAGGTTTCCACGAGCTCTGGTTCACGCT
TCCCGCAGAGAACGTGTCCGACGAGTCAAAAAGAGAGTTTGGAGAACGCG
AAGCCGACGAAATCAGTGTTTCTGAACAGCTGAGCCTACCCCGACCGGAG
CAGCGATCGCCGGGACAGCAGACTGCGGACAGCGACGCTCCACTGCAAAC
GGACGATGAGAGCGAGGATTTGAAGGACGCGTCGTCTTTCTCGAATGATA
TTTCAATGAGTTCGGCGAAGCCAGGGGGAGGGAGGGGGCGCATCGGGGTG
GTGAGATACGGACTCCCTCGTCCCGGGGCCGTTGTAGTGGCATCCTCAAG
AAAGCGGTCGCTGTCGGCGTTGTCGAAGCGCAGACCCAAGGCGCAGCCAC
AAGAATCCTTCGCTCGGAGCGCGACCCGGATCGCTAAAAAGAGATCAAGG
GTGGGAGCTGACGTCGCCAGGCAACCCCGGAGGGTTCACGATCGCTCCCG
GTCGTCCAGCGCCCCACCCCCGCGAAATCGTGCCGCCCGAACGGGCGAGG
GAGGTGGTGCACGCGAAAGAGTTCGTCGCCATTCCGCCAAAGATCCCGGT
GGCACCGGGCGGGCGTCGGATGGAAGCGAGATTGACAGCAGCGATATATC
CGACTTGAGCGCCCCAAACCTTAAGATTTTGTTCGTGGACCCCGAGGGAC
TGCTAAGATGGGTTCTGCCTCGTCTG
back to top