mRNA_A-nodosum_M_contig88.17.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig88.17.1
Unique NamemRNA_A-nodosum_M_contig88.17.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A6H5KJW5_9PHAE (Peptide deformylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW5_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.280e-53
Identity = 84/103 (81.55%), Postives = 93/103 (90.29%), Query Frame = 1
Query:    1 QVMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
            ++MYA+KGVGLAAPQVGVNKRLMVFNPEGD +NWLDEA+LVNP+IVA+GKGK+  EEGCLSFPGM G V  RN WVKVEA NAKGKK+KKKYTDWTARIFQ E
Sbjct:  136 KIMYAAKGVGLAAPQVGVNKRLMVFNPEGDAKNWLDEAILVNPKIVASGKGKITAEEGCLSFPGMEGKVERRN-WVKVEAVNAKGKKVKKKYTDWTARIFQHE 237          
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A7S0E2U1_9CRYP (Peptide deformylase n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E2U1_9CRYP)

HSP 1 Score: 149 bits (375), Expect = 2.270e-42
Identity = 68/102 (66.67%), Postives = 83/102 (81.37%), Query Frame = 1
Query:    4 VMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
            VMYAS+GVGLAAPQVG+NKR+MVFNPEGD + WL E  L+NP+IV   +G  ++ E CLSFPGM+G VR R+ W+K+EAQ+ KGK IKKKYT WTAR+FQ E
Sbjct:  134 VMYASRGVGLAAPQVGINKRIMVFNPEGDKKKWLQEIALINPKIVEMSEGTDVENEACLSFPGMQGKVR-RHKWIKIEAQDLKGKPIKKKYTGWTARVFQHE 234          
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A7S1U4W5_9STRA (Peptide deformylase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4W5_9STRA)

HSP 1 Score: 145 bits (367), Expect = 4.680e-42
Identity = 72/103 (69.90%), Postives = 81/103 (78.64%), Query Frame = 1
Query:    1 QVMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
            +VMYA++GVGLAAPQVGVNKRLMV+NPEGD R WL E VLVNPRIV   +    + EGCLSFP M G V  RN W+KVEAQN KGKK+KKK+T W ARIFQ E
Sbjct:   68 KVMYAAQGVGLAAPQVGVNKRLMVYNPEGDARKWLAEVVLVNPRIVERSEAVDEESEGCLSFPDMDGKV-ERNKWIKVEAQNLKGKKLKKKFTGWEARIFQHE 169          
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A7S4PNI0_GUITH (Peptide deformylase n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PNI0_GUITH)

HSP 1 Score: 147 bits (370), Expect = 1.160e-41
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 1
Query:    4 VMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
            VMYAS+GVGLAAPQVG+NKR+MVFNPEGD + WL E  L+NP+IV   +G  ++ E CLSFPGM+G VR R+ W+K+EAQ+ KGK IKKK+T WTAR+FQ E
Sbjct:  130 VMYASRGVGLAAPQVGINKRIMVFNPEGDKKKWLQEIALINPKIVEMSEGTDVETEACLSFPGMQGKVR-RHKWIKIEAQDLKGKTIKKKFTGWTARVFQHE 230          
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A7S1XTC7_9STRA (Peptide deformylase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTC7_9STRA)

HSP 1 Score: 145 bits (367), Expect = 7.340e-41
Identity = 72/103 (69.90%), Postives = 81/103 (78.64%), Query Frame = 1
Query:    1 QVMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
            +VMYA++GVGLAAPQVGVNKRLMV+NPEGD R WL E VLVNPRIV   +    + EGCLSFP M G V  RN W+KVEAQN KGKK+KKK+T W ARIFQ E
Sbjct:   68 KVMYAAQGVGLAAPQVGVNKRLMVYNPEGDARKWLAEVVLVNPRIVERSEAVDEESEGCLSFPDMDGKV-ERNKWIKVEAQNLKGKKLKKKFTGWEARIFQHE 169          
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A1Z5KQL3_FISSO (Peptide deformylase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQL3_FISSO)

HSP 1 Score: 143 bits (360), Expect = 7.520e-41
Identity = 67/102 (65.69%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    4 VMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
            VMYA+ GVGLAAPQVGVNKRLMV+N  GDP+ WLDE ++VNP IV   + + ++ EGCLSFPGM G V  R+ W+KVEA N KGKK K+K+TDW ARIFQ E
Sbjct:   81 VMYAAAGVGLAAPQVGVNKRLMVYNQSGDPKKWLDEVIMVNPTIVEFSEARNVETEGCLSFPGMDGPV-ERSKWIKVEAMNMKGKKFKRKFTDWEARIFQHE 181          
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A7S1YIG9_9STRA (Peptide deformylase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YIG9_9STRA)

HSP 1 Score: 144 bits (364), Expect = 7.940e-41
Identity = 70/102 (68.63%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    4 VMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
            VMYA+ GVGLAAPQVG+NKRLM+FN  GD   WLDE VLVNPRIV  G G  ++ EGCLSFPGM G V+ RN W++VEA N +GKKIKKK+ DW ARIFQ E
Sbjct:  134 VMYAANGVGLAAPQVGINKRLMIFNEHGDKTKWLDEMVLVNPRIVKKGGGTDVETEGCLSFPGMNGPVQ-RNKWIQVEALNKRGKKIKKKFFDWEARIFQHE 234          
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A7S1BIF6_9STRA (Peptide deformylase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIF6_9STRA)

HSP 1 Score: 142 bits (357), Expect = 4.450e-40
Identity = 67/102 (65.69%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    4 VMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
            VMYA++GVGLAAPQVGVNK+LMV+NP GD   WLDE  +VNP+I    +GK ++ EGCLSFPGM G V+ R+ W+KVEA N KGKKIKKK+  W ARIFQ E
Sbjct:  108 VMYATQGVGLAAPQVGVNKKLMVYNPSGDKTKWLDEVTMVNPKITTFSEGKDVETEGCLSFPGMDGKVQ-RSKWIKVEAVNLKGKKIKKKFVGWEARIFQHE 208          
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A7S3V6U4_9STRA (Peptide deformylase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6U4_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.100e-39
Identity = 65/102 (63.73%), Postives = 83/102 (81.37%), Query Frame = 1
Query:    4 VMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
            VMYA++GVGLAAPQVG+NK++MV+N  GD + WL E V+VNP+IV   +GK ++ EGCLSFPGM G+V+ R+ W+KVEAQN KGKK+KKK+  W ARIFQ E
Sbjct:  103 VMYATQGVGLAAPQVGINKKMMVYNETGDKKKWLKETVMVNPKIVDFSEGKDVESEGCLSFPGMNGDVQ-RSKWIKVEAQNLKGKKMKKKFKGWEARIFQHE 203          
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A7S1GJC1_CYCTE (Peptide deformylase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJC1_CYCTE)

HSP 1 Score: 140 bits (352), Expect = 2.400e-39
Identity = 67/102 (65.69%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    4 VMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
            VMYA++GVGLAAPQVGVNKRLMV+NP GD + WLDE VLVNPRIV    G  ++ EGCLSFP M G+V+ R+ W+KVEA   KG+K+KKK+  W ARIFQ E
Sbjct:  106 VMYAAEGVGLAAPQVGVNKRLMVYNPSGDSKKWLDEVVLVNPRIVQLSDGTDVEIEGCLSFPDMNGDVQ-RSKWIKVEALTPKGRKVKKKFNGWEARIFQHE 206          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJW5_9PHAE1.280e-5381.55Peptide deformylase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A7S0E2U1_9CRYP2.270e-4266.67Peptide deformylase n=1 Tax=Hanusia phi TaxID=3032... [more]
A0A7S1U4W5_9STRA4.680e-4269.90Peptide deformylase n=1 Tax=Phaeomonas parva TaxID... [more]
A0A7S4PNI0_GUITH1.160e-4165.69Peptide deformylase n=1 Tax=Guillardia theta TaxID... [more]
A0A7S1XTC7_9STRA7.340e-4169.90Peptide deformylase (Fragment) n=1 Tax=Phaeomonas ... [more]
A0A1Z5KQL3_FISSO7.520e-4165.69Peptide deformylase n=2 Tax=Fistulifera solaris Ta... [more]
A0A7S1YIG9_9STRA7.940e-4168.63Peptide deformylase n=1 Tax=Grammatophora oceanica... [more]
A0A7S1BIF6_9STRA4.450e-4065.69Peptide deformylase n=2 Tax=Corethron hystrix TaxI... [more]
A0A7S3V6U4_9STRA1.100e-3963.73Peptide deformylase n=1 Tax=Chaetoceros debilis Ta... [more]
A0A7S1GJC1_CYCTE2.400e-3965.69Peptide deformylase n=1 Tax=Cyclophora tenuis TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig88contigA-nodosum_M_contig88:111795..113170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0T4T4
PFAMsPep_deformylase
Model size315
Max annot lvl2836|Bacillariophyta
KEGG koko:K01462
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.42e-39
EggNOG OGsCOG0242@1|root,KOG3137@2759|Eukaryota,2XEWA@2836|Bacillariophyta
Ec32 ortholog descriptionchloroplast peptide deformylase
Ec32 orthologEc-24_001990.1
EC3.5.1.88
DescriptionRemoves the formyl group from the N-terminal Met of newly synthesized proteins
Cds size309
COG categoryJ
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870282.4597273-CDS-A-nodosum_M_contig88:111794..1118961680870282.4597273-CDS-A-nodosum_M_contig88:111794..111896Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 111795..111896 -
1680870282.4783363-CDS-A-nodosum_M_contig88:112141..1122721680870282.4783363-CDS-A-nodosum_M_contig88:112141..112272Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 112142..112272 -
1680870282.4888375-CDS-A-nodosum_M_contig88:113088..1131641680870282.4888375-CDS-A-nodosum_M_contig88:113088..113164Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig88 113089..113164 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870282.5054545-UTR-A-nodosum_M_contig88:113164..1131701680870282.5054545-UTR-A-nodosum_M_contig88:113164..113170Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig88 113165..113170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig88.17.1prot_A-nodosum_M_contig88.17.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig88 111795..113164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig88.17.1

>prot_A-nodosum_M_contig88.17.1 ID=prot_A-nodosum_M_contig88.17.1|Name=mRNA_A-nodosum_M_contig88.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=103bp
MYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGK
VIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQV
EQE
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mRNA from alignment at A-nodosum_M_contig88:111795..113170-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig88.17.1 ID=mRNA_A-nodosum_M_contig88.17.1|Name=mRNA_A-nodosum_M_contig88.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1376bp|location=Sequence derived from alignment at A-nodosum_M_contig88:111795..113170- (Ascophyllum nodosum dioecious)
CAGGTGATGTACGCTTCAAAGGGGGTGGGGCTAGCGGCGCCTCAGGTGGG CGTCAACAAACGCCTCATGGTTTTCAACCCGGGTAAGCCTTTTTTTTCTA AACCTATCCATCCACATTTTTACGAGTGGCTGTTTAAATCCCCCGCTAGT AGGCCTTGTGGTGTGTGTTGAGACTTTCGCAGTGATAGACTGTGTCTTGC TATTTGTACAGACGGGGAAACACATCGAGGCCCACGGAGGGCTAACAAAC AAGTCACTGCTTGCCGGCGCTACAAAAACACGCAGCCGACGCGCACACAA TTGGTGGCGCAAGTCTATATTGCATCGCGCTGTTTCGCTGATAAATATTG ATGTATGGGGCTTCTGTAAGGTAGGCGGGGGGGGCTAGGTGATATAAGGG GCTCCATGTCAATGTGTTGCCCTGTCCGGCTTTATTTTTTAAGATCGGGT GAGGAAGATGGCCTTTGTAGGTTAGCGCGCGAGCTGGGTGGGTCATGAGC TCGCCCGGGCGTCTTGTCGTTCCCTCAGGGGGTCTTTCGATGATGATTGA GGCGGGCGTCTTGTTTTTTTGCGTTTTGTTGTGTCCCTGATAGCTCGACC TCCTGGCTTGCAAGCGGAGGAGGAGAAAGACTGCCAAAGCATTCGGGCTC CCTCTCAGCCGCCGCATGCAGTCAGCCAGTAGCTCCTTGTTTGGGGTCCA TTTACGATGTTAAATCCTTTCCAAGTACTACAGCTGTGCTGTTGACAATG TTACCGCAGTTGAGGTGTCACAAAAAGACGCAACATATGTCCTGTGTATC ATATGCACAGCAGTACGCACCGTATTAAAAGTTCGTTACGCGCGCCCCCC CTCCCCCCCCCCCCAACGTTGTCCCCATTGTCTGTCGCGTCTCAAAAGAG GGGGATCCGAGAAACTGGCTGGACGAGGCCGTGCTTGTCAACCCGCGCAT CGTCGCCACGGGAAAGGGAAAAGTTATCGACGAGGAGGGGTGCTTGTCGT TTCCCGGGATGAGAGGCAATGTGAGACATGTCCCCGGAATCCCCCCCCCC GCCGAACTCCCGTTCTTCAGTGCGAAACTTGTCTGTTGCCAAAGGCGTAG ACTAACCCACTCGGCGCTTGGGGTCCAAACCTACTTTTCAGTCCCCCGTC CTTGCTTGGCAATCAACGCCGTACACTCGTACTCGTACAAGCGCCGTTGC GTGGCGTCTCGTTACGTTGCGTTGCGTCGCGTCGATTTGAGTTGCGTCGC TGTGTCGGCCGAGGTCAGGTGGAGAGGAATAACTGGGTGAAGGTGGAGGC GCAGAACGCGAAGGGGAAGAAGATCAAGAAGAAATACACCGACTGGACAG CGAGAATATTCCAGGTTGAACAGGAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig88:111795..113170-

>mRNA_A-nodosum_M_contig88.17.1 ID=mRNA_A-nodosum_M_contig88.17.1|Name=mRNA_A-nodosum_M_contig88.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=309bp|location=Sequence derived from alignment at A-nodosum_M_contig88:111795..113170- (Ascophyllum nodosum dioecious)
ATGTACGCTTCAAAGGGGGTGGGGCTAGCGGCGCCTCAGGTGGGCGTCAA
CAAACGCCTCATGGTTTTCAACCCGGAGGGGGATCCGAGAAACTGGCTGG
ACGAGGCCGTGCTTGTCAACCCGCGCATCGTCGCCACGGGAAAGGGAAAA
GTTATCGACGAGGAGGGGTGCTTGTCGTTTCCCGGGATGAGAGGCAATGT
GAGACATAGGAATAACTGGGTGAAGGTGGAGGCGCAGAACGCGAAGGGGA
AGAAGATCAAGAAGAAATACACCGACTGGACAGCGAGAATATTCCAGGTT
GAACAGGAA
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