mRNA_A-nodosum_M_contig88.17.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A6H5KJW5_9PHAE (Peptide deformylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW5_9PHAE) HSP 1 Score: 177 bits (449), Expect = 1.280e-53 Identity = 84/103 (81.55%), Postives = 93/103 (90.29%), Query Frame = 1
Query: 1 QVMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
++MYA+KGVGLAAPQVGVNKRLMVFNPEGD +NWLDEA+LVNP+IVA+GKGK+ EEGCLSFPGM G V RN WVKVEA NAKGKK+KKKYTDWTARIFQ E
Sbjct: 136 KIMYAAKGVGLAAPQVGVNKRLMVFNPEGDAKNWLDEAILVNPKIVASGKGKITAEEGCLSFPGMEGKVERRN-WVKVEAVNAKGKKVKKKYTDWTARIFQHE 237
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A7S0E2U1_9CRYP (Peptide deformylase n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E2U1_9CRYP) HSP 1 Score: 149 bits (375), Expect = 2.270e-42 Identity = 68/102 (66.67%), Postives = 83/102 (81.37%), Query Frame = 1
Query: 4 VMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
VMYAS+GVGLAAPQVG+NKR+MVFNPEGD + WL E L+NP+IV +G ++ E CLSFPGM+G VR R+ W+K+EAQ+ KGK IKKKYT WTAR+FQ E
Sbjct: 134 VMYASRGVGLAAPQVGINKRIMVFNPEGDKKKWLQEIALINPKIVEMSEGTDVENEACLSFPGMQGKVR-RHKWIKIEAQDLKGKPIKKKYTGWTARVFQHE 234
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A7S1U4W5_9STRA (Peptide deformylase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4W5_9STRA) HSP 1 Score: 145 bits (367), Expect = 4.680e-42 Identity = 72/103 (69.90%), Postives = 81/103 (78.64%), Query Frame = 1
Query: 1 QVMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
+VMYA++GVGLAAPQVGVNKRLMV+NPEGD R WL E VLVNPRIV + + EGCLSFP M G V RN W+KVEAQN KGKK+KKK+T W ARIFQ E
Sbjct: 68 KVMYAAQGVGLAAPQVGVNKRLMVYNPEGDARKWLAEVVLVNPRIVERSEAVDEESEGCLSFPDMDGKV-ERNKWIKVEAQNLKGKKLKKKFTGWEARIFQHE 169
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A7S4PNI0_GUITH (Peptide deformylase n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PNI0_GUITH) HSP 1 Score: 147 bits (370), Expect = 1.160e-41 Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 1
Query: 4 VMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
VMYAS+GVGLAAPQVG+NKR+MVFNPEGD + WL E L+NP+IV +G ++ E CLSFPGM+G VR R+ W+K+EAQ+ KGK IKKK+T WTAR+FQ E
Sbjct: 130 VMYASRGVGLAAPQVGINKRIMVFNPEGDKKKWLQEIALINPKIVEMSEGTDVETEACLSFPGMQGKVR-RHKWIKIEAQDLKGKTIKKKFTGWTARVFQHE 230
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A7S1XTC7_9STRA (Peptide deformylase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTC7_9STRA) HSP 1 Score: 145 bits (367), Expect = 7.340e-41 Identity = 72/103 (69.90%), Postives = 81/103 (78.64%), Query Frame = 1
Query: 1 QVMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
+VMYA++GVGLAAPQVGVNKRLMV+NPEGD R WL E VLVNPRIV + + EGCLSFP M G V RN W+KVEAQN KGKK+KKK+T W ARIFQ E
Sbjct: 68 KVMYAAQGVGLAAPQVGVNKRLMVYNPEGDARKWLAEVVLVNPRIVERSEAVDEESEGCLSFPDMDGKV-ERNKWIKVEAQNLKGKKLKKKFTGWEARIFQHE 169
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A1Z5KQL3_FISSO (Peptide deformylase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQL3_FISSO) HSP 1 Score: 143 bits (360), Expect = 7.520e-41 Identity = 67/102 (65.69%), Postives = 80/102 (78.43%), Query Frame = 1
Query: 4 VMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
VMYA+ GVGLAAPQVGVNKRLMV+N GDP+ WLDE ++VNP IV + + ++ EGCLSFPGM G V R+ W+KVEA N KGKK K+K+TDW ARIFQ E
Sbjct: 81 VMYAAAGVGLAAPQVGVNKRLMVYNQSGDPKKWLDEVIMVNPTIVEFSEARNVETEGCLSFPGMDGPV-ERSKWIKVEAMNMKGKKFKRKFTDWEARIFQHE 181
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A7S1YIG9_9STRA (Peptide deformylase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YIG9_9STRA) HSP 1 Score: 144 bits (364), Expect = 7.940e-41 Identity = 70/102 (68.63%), Postives = 80/102 (78.43%), Query Frame = 1
Query: 4 VMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
VMYA+ GVGLAAPQVG+NKRLM+FN GD WLDE VLVNPRIV G G ++ EGCLSFPGM G V+ RN W++VEA N +GKKIKKK+ DW ARIFQ E
Sbjct: 134 VMYAANGVGLAAPQVGINKRLMIFNEHGDKTKWLDEMVLVNPRIVKKGGGTDVETEGCLSFPGMNGPVQ-RNKWIQVEALNKRGKKIKKKFFDWEARIFQHE 234
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A7S1BIF6_9STRA (Peptide deformylase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIF6_9STRA) HSP 1 Score: 142 bits (357), Expect = 4.450e-40 Identity = 67/102 (65.69%), Postives = 80/102 (78.43%), Query Frame = 1
Query: 4 VMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
VMYA++GVGLAAPQVGVNK+LMV+NP GD WLDE +VNP+I +GK ++ EGCLSFPGM G V+ R+ W+KVEA N KGKKIKKK+ W ARIFQ E
Sbjct: 108 VMYATQGVGLAAPQVGVNKKLMVYNPSGDKTKWLDEVTMVNPKITTFSEGKDVETEGCLSFPGMDGKVQ-RSKWIKVEAVNLKGKKIKKKFVGWEARIFQHE 208
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A7S3V6U4_9STRA (Peptide deformylase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6U4_9STRA) HSP 1 Score: 140 bits (354), Expect = 1.100e-39 Identity = 65/102 (63.73%), Postives = 83/102 (81.37%), Query Frame = 1
Query: 4 VMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
VMYA++GVGLAAPQVG+NK++MV+N GD + WL E V+VNP+IV +GK ++ EGCLSFPGM G+V+ R+ W+KVEAQN KGKK+KKK+ W ARIFQ E
Sbjct: 103 VMYATQGVGLAAPQVGINKKMMVYNETGDKKKWLKETVMVNPKIVDFSEGKDVESEGCLSFPGMNGDVQ-RSKWIKVEAQNLKGKKMKKKFKGWEARIFQHE 203
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Match: A0A7S1GJC1_CYCTE (Peptide deformylase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJC1_CYCTE) HSP 1 Score: 140 bits (352), Expect = 2.400e-39 Identity = 67/102 (65.69%), Postives = 80/102 (78.43%), Query Frame = 1
Query: 4 VMYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKVIDEEGCLSFPGMRGNVRHRNNWVKVEAQNAKGKKIKKKYTDWTARIFQVE 309
VMYA++GVGLAAPQVGVNKRLMV+NP GD + WLDE VLVNPRIV G ++ EGCLSFP M G+V+ R+ W+KVEA KG+K+KKK+ W ARIFQ E
Sbjct: 106 VMYAAEGVGLAAPQVGVNKRLMVYNPSGDSKKWLDEVVLVNPRIVQLSDGTDVEIEGCLSFPDMNGDVQ-RSKWIKVEALTPKGRKVKKKFNGWEARIFQHE 206 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig88.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig88.17.1 >prot_A-nodosum_M_contig88.17.1 ID=prot_A-nodosum_M_contig88.17.1|Name=mRNA_A-nodosum_M_contig88.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=103bp MYASKGVGLAAPQVGVNKRLMVFNPEGDPRNWLDEAVLVNPRIVATGKGKback to top mRNA from alignment at A-nodosum_M_contig88:111795..113170- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig88.17.1 ID=mRNA_A-nodosum_M_contig88.17.1|Name=mRNA_A-nodosum_M_contig88.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1376bp|location=Sequence derived from alignment at A-nodosum_M_contig88:111795..113170- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig88:111795..113170- >mRNA_A-nodosum_M_contig88.17.1 ID=mRNA_A-nodosum_M_contig88.17.1|Name=mRNA_A-nodosum_M_contig88.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=309bp|location=Sequence derived from alignment at A-nodosum_M_contig88:111795..113170- (Ascophyllum nodosum dioecious)back to top |