mRNA_A-nodosum_M_contig8782.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8782.2.1
Unique NamemRNA_A-nodosum_M_contig8782.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8782.2.1 vs. uniprot
Match: D8LLN9_ECTSI (Similar to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.160e-9
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    4 AARWLALGRRFSRHKAASVIQATARGMAVRRTAGRRMADSRRRIAEAGERARQKPSLILGVK 189
            AARWL LGRRFSR KAA++IQA ARGMA R+  G  +A +R RI +A   A   PS ILG +
Sbjct: 2256 AARWLVLGRRFSRAKAATMIQAAARGMAARKKTGPGIASARARIEKANANALADPSQILGTR 2317
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BLAST of mRNA_A-nodosum_M_contig8782.2.1 vs. uniprot
Match: A0A6H5KRH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH5_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 4.950e-8
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    4 AARWLALGRRFSRHKAASVIQATARGMAVRRTAGRRMADSRRRIAEAGERARQKPSLILGVK 189
            AARWL LGRRFSR KAA++IQA ARGMA R+     ++ +R RI  A   A   PS +LG +
Sbjct: 2137 AARWLVLGRRFSRTKAATMIQAAARGMAARKKTDPGISSARARIERANANALADPSQVLGTR 2198
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8782.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLN9_ECTSI1.160e-958.06Similar to asp (Abnormal spindle)-like, microcepha... [more]
A0A6H5KRH5_9PHAE4.950e-853.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8782contigA-nodosum_M_contig8782:11556..13121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LLN9
Preferred nameASPM
PFAMsASH,Arm,CH,IQ
Model size192
Max annot lvl2759|Eukaryota
KEGG koko:K16743,ko:K16774
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000922,GO:0001764,GO:0002052,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007399,GO:0007405,GO:0007417,GO:0007420,GO:0007548,GO:0008150,GO:0008283,GO:0008284,GO:0008406,GO:0008584,GO:0009786,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010720,GO:0010721,GO:0015630,GO:0016020,GO:0016043,GO:0016324,GO:0016477,GO:0017145,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0021537,GO:0021543,GO:0021872,GO:0021873,GO:0021987,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030154,GO:0030177,GO:0030496,GO:0030900,GO:0032501,GO:0032502,GO:0032504,GO:0036445,GO:0036449,GO:0040007,GO:0040011,GO:0042127,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045137,GO:0045177,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045769,GO:0046546,GO:0046661,GO:0048103,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051094,GO:0051179,GO:0051225,GO:0051235,GO:0051239,GO:0051240,GO:0051241,GO:0051301,GO:0051302,GO:0051321,GO:0051445,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051653,GO:0051657,GO:0051661,GO:0051674,GO:0051704,GO:0051726,GO:0051782,GO:0051960,GO:0051961,GO:0051962,GO:0055057,GO:0060284,GO:0060322,GO:0060828,GO:0061351,GO:0061458,GO:0061842,GO:0065007,GO:0065008,GO:0070925,GO:0071840,GO:0071944,GO:0072089,GO:0072091,GO:0072686,GO:0072687,GO:0090263,GO:0090306,GO:0097150,GO:0097431,GO:0098590,GO:0098727,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140013,GO:1902692,GO:1903046,GO:1990752,GO:2000026,GO:2000177,GO:2000179,GO:2000241,GO:2000648
Exons2
Evalue1.9e-10
EggNOG OGsCOG5022@1|root,KOG0165@1|root,KOG0160@2759|Eukaryota,KOG0165@2759|Eukaryota
Descriptionnegative regulation of asymmetric cell division
Cds size192
COG categoryZ
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870279.5488598-CDS-A-nodosum_M_contig8782:11555..116811680870279.5488598-CDS-A-nodosum_M_contig8782:11555..11681Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8782 11556..11681 -
1680870279.5628536-CDS-A-nodosum_M_contig8782:13055..131211680870279.5628536-CDS-A-nodosum_M_contig8782:13055..13121Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8782 13056..13121 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8782.2.1prot_A-nodosum_M_contig8782.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8782 11556..13121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8782.2.1

>prot_A-nodosum_M_contig8782.2.1 ID=prot_A-nodosum_M_contig8782.2.1|Name=mRNA_A-nodosum_M_contig8782.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=64bp
VAARWLALGRRFSRHKAASVIQATARGMAVRRTAGRRMADSRRRIAEAGE
RARQKPSLILGVK*
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mRNA from alignment at A-nodosum_M_contig8782:11556..13121-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8782.2.1 ID=mRNA_A-nodosum_M_contig8782.2.1|Name=mRNA_A-nodosum_M_contig8782.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1566bp|location=Sequence derived from alignment at A-nodosum_M_contig8782:11556..13121- (Ascophyllum nodosum dioecious)
GTGGCCGCGCGTTGGCTTGCCCTCGGCCGGCGATTTTCGAGGCACAAGGC
GGCATCAGTGATTCAGGTGCTTTCGGACTATGATAGGGAGGATTTTCGGA
TATCGCTTGCTTTCATGCAGGAAATCACAAAAAAAAGAGACTATGAAGGA
CATAGCTTACATCGTGTCCGAATCTGGCTGTTGCTAAACTCACAATATGT
GCTTGAAAATATGGTCACCGGAAAATAGATTTCTACGGCAAAGCGCGTTG
TCAATAGTACTGTACCCCAGGCTACACATACGCTTTTTCCTCATTTTAAG
ACGAAGGCTGCCGGGTAAGGTCGTCTGAATCACCGCTGGGTTATGGCACC
AAAATGGTTATGCCGGCTCAAACCCAGATATCTGTAACTTTGCTTTTGTC
CAACTTCGCTGAGACGTGGCCATAATTCCAGCTATGTAGTGGAAAAATAA
GAACGAACGGTACGCACAATCTAGATGTTTTTGTAGAAAGTGCTGTAGCT
CGAGTATAACCAGATATTCTGACCACCAACCCAAGTCATACCGTATTATA
ACACCGTGGAGCTGGAGATTATTTAAGTCTTGCGTATTGGAGAAACCAGA
CTCAAGATTCCATCGTTTTTAGCCATAGCACGACCTCTGTGTGTGTTAGT
TAGCATTCGTTATCTGTACGGGTCATGTAAAGTGTCGGCACAGTATTTGC
AGCCTAGATTTATCTGGTCAGGTTGCGTCAGAATCCAACCTTGAGCACAT
AGAGTCGAGGCTAGTCCTGCCCTCCTATTGATAGAGCTTTGTATTTGATT
CGCTTTTGTTATGAACTCTTGCCCTCGAGCGAGGGCACGCGGCGCTATAG
CTTATAAGACTTTATCGAATACGTTACGCTGATGCCCGCAACAGCTCCAG
TCACACCCGAGGTCGCCCCGGCTTTGGGACTCTCTGGGTGTAGAGTAAAC
AGCTAGTTTTTTTTAATACAGTGGAGGGCTGAGACGTCAATGTAACTTCT
CCTGTCAAAGGATTCGAGGTCCGGCGAAAAGCGGCCATTGGTAGCTAGCT
CAGCACTCCTCTCCCCCCCGTATGTAATATTTACTCCGTTTTTACTGCGG
TTGAGGGCTGAAGCGCGTTTTTACTCTCGAGGGTTGGAGATTTAGGATTT
GGGGATACCAGGGTTTACAGTCCGGGGAGAGCGGCCGACGGTGACTCAGC
ATTTTTTTCCCCTCGATATCCCCGTGGGCTCCCGCATCGCGTTACATGAT
GACTATAACTCAACTTTTTACTGCAGCTACCGTTGAGTTTTGTCTGTTGT
TATAATAATTCGTATTGCACCTCGTACTTCTTTTTATTTTATATCGATCC
CACAAAAATGAAAAAAAAAGTTACTCCCTTGCTGGACTGGTAAAGCTTGT
CCAATTAGGAACACGCCGCATTTTTGTTTTCCCTTTCCAGGCGACCGCGC
GTGGGATGGCGGTACGACGCACAGCAGGCCGTAGGATGGCGGATTCACGA
CGCCGGATCGCGGAAGCAGGGGAGAGAGCTCGTCAAAAACCATCCCTAAT
CCTCGGAGTGAAGTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8782:11556..13121-

>mRNA_A-nodosum_M_contig8782.2.1 ID=mRNA_A-nodosum_M_contig8782.2.1|Name=mRNA_A-nodosum_M_contig8782.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=192bp|location=Sequence derived from alignment at A-nodosum_M_contig8782:11556..13121- (Ascophyllum nodosum dioecious)
GTGGCCGCGCGTTGGCTTGCCCTCGGCCGGCGATTTTCGAGGCACAAGGC
GGCATCAGTGATTCAGGCGACCGCGCGTGGGATGGCGGTACGACGCACAG
CAGGCCGTAGGATGGCGGATTCACGACGCCGGATCGCGGAAGCAGGGGAG
AGAGCTCGTCAAAAACCATCCCTAATCCTCGGAGTGAAGTAA
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