mRNA_A-nodosum_M_contig8770.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8770.1.1
Unique NamemRNA_A-nodosum_M_contig8770.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8770.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8770contigA-nodosum_M_contig8770:18100..18994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size895
Hectar predicted targeting categoryother localisation
Exons1
Cds size672
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870279.5042443-UTR-A-nodosum_M_contig8770:18099..183221680870279.5042443-UTR-A-nodosum_M_contig8770:18099..18322Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8770 18100..18322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870279.5147886-CDS-A-nodosum_M_contig8770:18322..189941680870279.5147886-CDS-A-nodosum_M_contig8770:18322..18994Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8770 18323..18994 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8770.1.1prot_A-nodosum_M_contig8770.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8770 18323..18994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8770.1.1

>prot_A-nodosum_M_contig8770.1.1 ID=prot_A-nodosum_M_contig8770.1.1|Name=mRNA_A-nodosum_M_contig8770.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=224bp
MFNVRHKMCRTEGCRKQPFLGEGSATTAENCTQHAPHGMINTKWKMCGTE
GCGKFAAFGVAGTITTEYGIKHSHVGMVDVCSTKCKRKGCGKRLSFGVAD
TRKIEYCAQHALGGMVNVKSMMCRTEDCDKIAAFCGRYENGGALQANALV
GMVNVKDKVCRGGDKIAAFGVEGTRTAYCTQHALDGMVNIKGIICRSEGR
GKIAAFGVEGANRAEYCTQHALGG
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mRNA from alignment at A-nodosum_M_contig8770:18100..18994+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8770.1.1 ID=mRNA_A-nodosum_M_contig8770.1.1|Name=mRNA_A-nodosum_M_contig8770.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=895bp|location=Sequence derived from alignment at A-nodosum_M_contig8770:18100..18994+ (Ascophyllum nodosum dioecious)
AGGGTGTTGTGAGCAGCACGTCGAGAAGAGGACATTCAACTTCCCCAACA
GCAGATAGTACACAGCCGAAAACTGCGGTAAGGTTCAGTCGTTTGGAGGT
TTAGGCAAGAGCATCGTGGACTGTAGCGCATAGCAAGCCTGTCAACGCTG
CGGCAAGCGGTCGTATTTCGGAGTGACCGGCACGAGAAAGGCGGAGTACT
GTGCACAGCACGCACCAGACAGCATGTTCAACGTTAGGCACAAGATGTGC
AGAACTGAAGGCTGTCGGAAGCAGCCGTTCTTGGGAGAGGGAAGTGCGAC
AACGGCGGAGAACTGCACACAGCACGCACCGCATGGAATGATCAACACCA
AATGGAAAATGTGCGGAACCGAAGGCTGCGGCAAGTTTGCAGCGTTTGGA
GTTGCAGGTACAATAACGACGGAGTACGGCATAAAGCACTCACACGTTGG
GATGGTCGACGTCTGCAGCACAAAGTGCAAAAGGAAAGGTTGCGGAAAGC
GGCTATCCTTCGGAGTGGCTGACACAAGGAAAATAGAATACTGTGCACAG
CACGCACTGGGTGGGATGGTCAACGTCAAGAGCATGATGTGTAGAACCGA
AGACTGCGACAAGATTGCAGCTTTCTGTGGCAGGTACGAAAACGGCGGAG
CACTGCAGGCAAACGCACTGGTGGGGATGGTCAACGTCAAGGACAAAGTT
TGTAGAGGCGGCGACAAGATTGCGGCGTTCGGAGTTGAAGGTACGAGAAC
GGCGTACTGCACACAGCACGCACTAGACGGGATGGTCAACATCAAGGGCA
TAATTTGTAGAAGCGAAGGCCGTGGCAAGATTGCAGCGTTCGGAGTGGAA
GGTGCAAATAGGGCGGAGTACTGCACACAGCACGCACTGGGTGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8770:18100..18994+

>mRNA_A-nodosum_M_contig8770.1.1 ID=mRNA_A-nodosum_M_contig8770.1.1|Name=mRNA_A-nodosum_M_contig8770.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at A-nodosum_M_contig8770:18100..18994+ (Ascophyllum nodosum dioecious)
ATGTTCAACGTTAGGCACAAGATGTGCAGAACTGAAGGCTGTCGGAAGCA
GCCGTTCTTGGGAGAGGGAAGTGCGACAACGGCGGAGAACTGCACACAGC
ACGCACCGCATGGAATGATCAACACCAAATGGAAAATGTGCGGAACCGAA
GGCTGCGGCAAGTTTGCAGCGTTTGGAGTTGCAGGTACAATAACGACGGA
GTACGGCATAAAGCACTCACACGTTGGGATGGTCGACGTCTGCAGCACAA
AGTGCAAAAGGAAAGGTTGCGGAAAGCGGCTATCCTTCGGAGTGGCTGAC
ACAAGGAAAATAGAATACTGTGCACAGCACGCACTGGGTGGGATGGTCAA
CGTCAAGAGCATGATGTGTAGAACCGAAGACTGCGACAAGATTGCAGCTT
TCTGTGGCAGGTACGAAAACGGCGGAGCACTGCAGGCAAACGCACTGGTG
GGGATGGTCAACGTCAAGGACAAAGTTTGTAGAGGCGGCGACAAGATTGC
GGCGTTCGGAGTTGAAGGTACGAGAACGGCGTACTGCACACAGCACGCAC
TAGACGGGATGGTCAACATCAAGGGCATAATTTGTAGAAGCGAAGGCCGT
GGCAAGATTGCAGCGTTCGGAGTGGAAGGTGCAAATAGGGCGGAGTACTG
CACACAGCACGCACTGGGTGGG
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