mRNA_A-nodosum_M_contig876.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig876.8.1
Unique NamemRNA_A-nodosum_M_contig876.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig876.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig876contigA-nodosum_M_contig876:114933..122016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size394
Hectar predicted targeting categoryother localisation
Exons3
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870276.8607647-CDS-A-nodosum_M_contig876:114934..1149541680870276.8607647-CDS-A-nodosum_M_contig876:114934..114954Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig876 114935..114954 -
1680870276.8739839-CDS-A-nodosum_M_contig876:115625..1159021680870276.8739839-CDS-A-nodosum_M_contig876:115625..115902Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig876 115626..115902 -
1680870276.8845022-CDS-A-nodosum_M_contig876:121923..1220161680870276.8845022-CDS-A-nodosum_M_contig876:121923..122016Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig876 121924..122016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig876.8.1prot_A-nodosum_M_contig876.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig876 114935..122016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig876.8.1

>prot_A-nodosum_M_contig876.8.1 ID=prot_A-nodosum_M_contig876.8.1|Name=mRNA_A-nodosum_M_contig876.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=130bp
SEGGAGSFVGKRLVGASRAALNALYLTRSPNRSESVQSNDYMTPGRTHKG
HRQSQGNVIGNRLGLPAAAASAHSVLRGFAPGEGGGSRGSWGSAKSFDFS
PSANATPVDSTTSTTSAHPRIRKGYLLMLR
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mRNA from alignment at A-nodosum_M_contig876:114933..122016-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig876.8.1 ID=mRNA_A-nodosum_M_contig876.8.1|Name=mRNA_A-nodosum_M_contig876.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7084bp|location=Sequence derived from alignment at A-nodosum_M_contig876:114933..122016- (Ascophyllum nodosum dioecious)
TCGGAGGGAGGAGCCGGTAGTTTCGTGGGCAAGAGGCTGGTGGGGGCTTC
GAGGGCTGCCTTGAACGCGCTGTACCTTACCCGATCCCCGAATGTGAGCA
GTTTTTGCACTCCTGTACGGTATTATTAGAAGTACACGGAAGAGTTCGCA
CGCGAGTTTGCTGTCGTTCCAAAATTGCTCTCCTCGGAGCATTTCGAGAT
TTGCGGTGGCCGTTCAAGGCATGAAATGGCCAGCAGAAGTAATCATCTCG
GTAAGGCCGACTTCTTATCTTGCTACCTTCTTCTAGCTCGCTGCTCGTCT
TGACTGACTGTGGGGCACCTAATGGACACAGATTAGAAGAAACACTCTGC
CTTAAATCTCGCCGCATTGACCTCTCTTTCAAATATCACTTTCAGCATTC
CCGGAGAGGCCTGTGCACGCCCCAAAGCAACCTCCAGCGGTCAACAGCTT
ACTGTGCAGTGTTCGAGTACGATGGGATCCCTCTGATTGCGTTGCAAAGA
ATGACACAGCGGAAGATATACTCACAAGTACCTGTTCTCGTGGTACAAAG
ACTATCGGACTGCTGTGGAAAAAAAACAGGGCAAAAACGACAACAACAAA
AAATGTTGACCGTACGATTGTCATGGTACTGTATGGTCGCACATCTAGCA
AGAGTATGGATCAATCGGGTAAGGTTGCCAATCCTGCACGTGGTCAGCTG
AACCGGGAAAATGAATATTTCCCTGTCCACGATCGCGCCTTAGAATTTAG
TCTCGCGAGACGGGTTCGGCAGTCCCGTCCCGCGTCAGCCTGCTCATCTC
CATACTTGGGCTGAATCTGGTGCTTACTTATATACGAAGACCTGGTCGTA
GTGAGTTTCCACCGTATTTTAAGGTGGCCATGGCCTGGGCGGTGCAAACC
CGGCGGTGAATACACCCCGGCCTAGTAGGGGTACAAGGATAGAATCATGC
GATTTTATTGTCTTGATTGGTGATCCTTGATTCTTTTTGTTTGTTTAATT
TTGCTTGGCCTCGCGTGTCGAGTGGGAGCGATGGGCTCTATCTATCTCCC
TCCTTTGTCTGACATGTCGCCTGCGACGTCTGACTGTCTGGAGACTTATT
TTTCTGGGGGGTTTTATTTTATTTTCCAATTATCGCGTGTGTGTTGACTT
TTCTGGGTCCTTTTATTTCTTTCTGATATGTGTACCCTTTCTGGGTAGTT
AGCCTGTGACCACGGAAGGCGTCCGCGTCAGTTGGACCAGTACGGATGTT
AGAAAGTACTGAGTAGAGACCGGAACGGCTTTTAATGTGAAGACAACAAC
AACAACAATAGTAGCTTCAAATGGAAATTGTTTGTAAGAAAAAATTGTCG
CCGCGGCTGATGAAAAATTCTGGAAAGTTTTCATTGGCCGATGAAAACTT
CCAGGCCAATCCATGATAATGGCAATTTTCCCTGCGTGAAGTTCTTATTC
CGTGGGCCCATCAATGGGGTAACAAAAGAACAGTTTCCCAATGAGAACTT
CCGGAAATTAATATTCTCTATCTAGAGCTATTACGTTAGCATTCGAGTAC
TTGTGTTGTCTGTAACCACAGTTGTTGTTATTTAAAGAAAAATCAGAACG
CACCTAGACCTTCTGAGCATCCCCCGGTTAGGGGGGAAAAAATGTCAAAA
CGTTTAGGTGGGATCAAAGGCTGCAAATGCAAAACCTCTTCATGGAATTT
AAACGGGTTCCCCGATGGAAATAACATTGGGTCAACAGTATAATGTCGGG
GTGAAGCCCACCGTTATACTGTACATTTACATTAATCGCGATAAAGGTAC
AACAGAAAAACATTAAAACCAAAGACAACGTAGTATACCATCACACATGG
TAGTAGTAATATACTACGTATTACATAGGCTATAAATACAAATCCACTAC
ATGGTATTTAAACGGGTTCCCCAATGGTAGTAACCATGGGTCAACAGGTA
TAATGTCGGGGAGAAGCCCACCGTTATACTGTACACTTATATTGATCACC
ATGCACAGCCATCAATCATAACCCAATATAACCACTGTAATACATAGTTA
CGAGGATGGTACTAATATCAATAATAGTACCATCAAGTACTAAATCTGAA
CCGCATGTTGTTTCTCACATTCAGCGTATTGGTTGCCAACCCGGAAAAAC
TACTTTACGCGGTAGCCAATCCCGCTCGTGGTCTGCTGAACAGGGAAAAG
AGAACAAAATATAAAGTCTGGCAGCATACCTCCCCCACCCCCCACACTGC
TAGTTCGGAGAATAAATGAATAAAAAATCACGCGACGCATCTACAGGCGC
TACGCAGGTCTTCGGCTCGTCGGCTAGGCCAATGGGTATGGCCTCGCAAA
ATTCTACACTCCCGTGTGCGATAACACGTTTCCCAGTCTCGTTGCTTCTC
TCTTCTCCTGGCGATGTCTAGCCGCGTCTACCTCTTATTTCCTCCACGCG
GCCATGAACCTCCGCCCACCCTCCGTGACCGTCTCAACCCACACCTCAGC
CTTTAACTTCGTCGCTTTCCAGTCGCCCGCTATGCCAAACGCCCGGATGT
CGCTCTGTACGCAATCGATCCACTCTTTCTCCTTCCCACCCCGTCCTCTC
CGCACTGCACCCTCAAGATTTCCAAACACGATTCGCTTGGGCAGCCGCCC
GCCGCCCGCCGCTCATTCGGAGGAGCGTCCCCGCCCACAAAAGTCTTCTC
GTTCGCAACGTCGTCTCAATTCTCTCACACCGGGTTATCTCAAGGGCACG
GTTGTACGAAGTCATCCGATGGTCTGGTCGTCTCTTGCGCTGTGCCCCGA
TTATACGAAGCCAGACTCGGTGGTGTACGGTGCGGAGTTTGGCGTAGTGT
TCCTGGCGAAGGGTCCACGTACTGCATCCATGCAAGAGGCCTCGGTTGCC
TCGACCTTAACCAATCGGGTCTTGGAGGAGAGCACGGCTTCCGGTTAGTT
GTAAAGCTCCCGTAGGCACCGCCTGATGCACATCCAGCATGCGCGGGTCC
GTCTGGCGATTTCAACGGACATGTCCGGGACTTCGGTCACGGCGCCCCCT
AGGTAGGTGAAGGATTGCACCTGTTTGTACGTTTGCCCGACCGCTTTCAC
TTGCACCATCGTCCGCGGTGTACGCGGTGGAGGCATGCGCATGGTCTCTA
TCTTCTTCGCCGACACGGTTAACGGCACGACGAACGTAGTCCATAGCGGG
CTCCGGTCACATCGACGTCGGCGGTTCCTTCAGGTGCACCAGCTCGGCGA
GGATGGCTGGATCCTCGCTGAATCTCTGGAGGACAATGGTCAGCACGGCT
GCGAAGAAGATGTTAAACTACAGCGGGGATAGCACGCATCCTTGCCGTAG
TCCTTGCTCCACCTCGAACCAATCCGAACAGACGCTGTAAGTTAGAAGCG
CCAAACCATTAGACTACGAGTCACGTGACTAGTAGTCTAATGGTTTGGCG
CTTCTAACTTACAAAAAAATTGTCGGGTTCAACAGTGATCTCCGGGGACC
CCCCCTCGCCACGAACTGCAGTATCTCAATGTTTGCACAACTAAGAAGAT
ACACCCTCTCCCTGCTGCCCCTCTGTAATAATGGAATGGAATAATGGAAT
AATAATCCTCCATGTGTGTATGTATATTTATTAAATTGCACATAACCGCG
CAATCCGGCCCTGTCATCCTAGTCATTCTATGCCACTCGCATTGATCCTC
CCAATGTATAAATGTATGATCATCACATATATTAAGAGAATGGATCAACC
GTACTCAGGCTGAATCTGGTGCTGCCGTCTTGCTTGTCTGAGTCGGCAAC
TACTGTATCGATATTGTTACCTGGGTATATATGGTCATCACGTTTTGCAG
ATTTGGGCATCAACCCGGTGCGGGTCGCCAATCGTGCTTTGTGGTCGGCC
GCGAGCCAGGTTCGGTCGTGTCGTCCCGCGCCAGCCCGTTCATTCTCCGC
ACCCAGCCTGAACCGCTCATTCTTCGCACCCAGCCTGAACCGCTCGTTCT
CCGCACCCAGCCTGAACCGCTCATTCTCCGCACCCAGCCTGAACCATACC
AGACGGAGAGGTTTCTAATTAAGGATCGATGCGGGCTTCAACAGAGGTTT
TTTTTAGTTCTCCCCGCCGATGGCGCAAAAACCTAGAATGGGAAGCGAGT
CATCCTCTCCGTTTCAACTATCGTCTGTAAAGTATTAATAGTACGCAGTG
TACACTTTTGGGCTCTAACAGTACAATTGGGAAAAAGAAAAGTGAAAAAA
CGGGTGCTGTACTCCTGTTCCAGAGCTACAGCAATACTACTACAGCAATA
CTATAATAAAACAGCAATACTACTACTCCTGTGCTTTTAACGAAACGCAC
ATCGCCCTACCTGCGTATCTCTGCTGACAGCTTCCCGAAAGTATTCGATA
AAATGGACACCAGTGTTTGGAAAGATATGACCGCGTGAAACGAAAACCAG
TCGAAGTTCTGTCCCATAACATGAGTAATGCTGGAGTACGCATAACGAAC
AACTTACACAAAGCTGCACTGGTGTTCATAGTAGGAAAATATAGGAAAAT
ATTTCCAGTGGCAACCGAGACTAGTAAGTGGTGAAGCAACTTGATGAAGA
TTGATCCGTCCCAATTTGCGCGTTTCAACGTATTTTTCCTTCCAAGAGTA
CGGCGCGCTTTTTTTTGCGAGCGGCAGCCGCGCCTGTGTGCGTAACAACA
GTTTAACAGTTTATAGTGTATACTGTATGAGAACGAGATCGGGTGGCAAC
TGCACTGTACTGTCGTGGTGTGTACTGACACGTGTTCCTCGCCTATGAAG
AATAGCCATCGTTTTACGCTGCTTTGGGCTCGCCTGAGGCCTCCCCCTCC
CAGGACCTTAAGAACTCCCTAGCTTTTTATTTACAGTACCTTGTAGTAGG
TAGTGTCAAGTGGGATAACGGAGGTTGGATATGATTGCCGTGAGTTGGTG
TTACAATACGAGACGTGTGCATTTTGAGAAAACGGTCTGTGTTCTGCGGC
AGCAACAGCGTGCGAAGCGATCCCTGTTACTCGTTGTTTAAAGAAAAATC
AGAGCACACCTAGACCTTCTGAGCATCCCCCGGTTGTTGCTGTAACTGTA
TACTGTATACAGTTTAAGTATACAGTATACAGGTTTAAGTATACAGTATA
CAGTTTAAGTACAGTATACAGTTTAAGTATACAGTATACAGTTTAAGTAT
ACAGTATACAGTTTGAAGTATACAGTATACATTTTTAAGTATACATTATA
CAGTTTGAAGTATACAGTATACAGTTTAAGTATACAGTGTGTGTGTGTGT
TTTCTTCCCATTCATTCTGGACATCAATGGACGTACCAGCCGGGGTCACA
CAGGAGGAAGGTCACACAGGATTTCTCATCTACCTTCTTTCTGCGGTGCA
TGCCTTAATTTTTCTCGCGAGAAGGATTCAGCCATTCCTTTCCCTCGTCG
ACCGTGAAGTCGAAATTTGTGTACTAACGATTTTAATCGTTCTCCACCCG
TTGGGCATTTTTATTTTAGTTTTTTTGTTTTTTAGTGAGAAAAATCCCGT
TTGCCGGGATCGAATTCACGTCCCAACGTGTCAGAGGGTTACGCGGTACC
TCTGAGCTACCGGGGCGACCGGTGTATAGTTTAAGTATACAGTATAAAGA
ATAGTGTTTACTGGACAAGTGCAAAAATTACGATGATACCTTAATACAAG
TATTATGTTATAAATAGGAGGCTGACTGTACTCCTACATACAGTATACAG
TATCTAATTGTACTTTACATAGTCACGTTCCGGTTATTCTTGTGGAATCA
CGCACAACAGCAGTATCGTTCTTCCAGTGCTATATATATAGACCTATATG
AGGTAGTAGTGGTGAACAGACGCAAGTAATGGAGTAATAGAGCAATAGAG
TAATGGACTGTGCATCGAAGGAGAGGCGTTTTTCGCTGCGAATCACCGTG
GCCTCGCCTTCACACACACACGCACACACACTCGAAGCATTTGACTCTTT
CAAGTGTGATTTGATGAAGCCTGCGTTGCACCAACACATATTCGGCCGCA
CGGCCTCTCCCCCCCACCCCCCCTTCCCCCCTCCCCCCCCCCCAACATGC
CTCCCTAAAAACAGCGCTCGGAGTCCGTGCAATCAAATGATTACATGACT
CCGGGCAGAACCCACAAAGGACACCGCCAGTCTCAGGGAAACGTGATAGG
GAACCGGTTGGGCTTACCCGCCGCGGCTGCTTCGGCTCACTCGGTGCTAC
GCGGTTTCGCTCCTGGAGAAGGTGGCGGCAGCAGGGGAAGCTGGGGCAGC
GCCAAAAGCTTTGACTTCAGCCCGTCGGCGAACGCTACTCCTGTAGATTC
TACGACTTCTACGACGAGTGCTCACCCGAGGATCAGAAAAGGTTACTTAC
CGGAAGTACCGGGGCGGCTAGTGTTCACCGTATGTTCGACATTGAATCGC
GATGCTTGTGTCATTCAAGGCAAAAAATAAGTCCGGCTCCGAGTATCGCC
ATTGTCAACATGCGTTTGACCGGGTTTGGGTTGGACTAAAAGTCGCCAGT
GTTCGTGCGCGTATGGAACTCCATAACTAAATGCGTTTTTGAGAAGGGGA
CGCTGGTGTTGCTACGAGCAGCGTGTATATGTTTGTACCGACTCCGCAAG
ACCCTTGCTTTACACTGCACGCCAAGCCACCAGGGTCGAGATCGCCATTG
ATATTTCATGAGGTTGTACGTTTGAAAGCGGCGCGTGTGTTCGAGGACGA
CTCTCTCATCAATGACGCGTTAGAAGTATCAAGATGATAGATAGTCAAGC
CGACGCCAATGAGAGTGTACCGTACAGTTACACCGCTTAAACCATCGTTT
TTTATTTTATTTATTTTATGTCGGCAAAACCCTAACCCGATAGCCCTATG
TACCCAAACCCATTAATACGACAACTCTGTACACCCTATTGATAAAACCC
TTTTTTACCTTTTTTTTTCTGTGTAAGCCGACACTTTATACTATTAATAG
TAGACGATACAGAATGGAGCGTTCTTCGATAAATACAATCCGACTCGTGC
TTGCTCCCACAGGATATCTTCTCATGCTGCGGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig876:114933..122016-

>mRNA_A-nodosum_M_contig876.8.1 ID=mRNA_A-nodosum_M_contig876.8.1|Name=mRNA_A-nodosum_M_contig876.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at A-nodosum_M_contig876:114933..122016- (Ascophyllum nodosum dioecious)
TCGGAGGGAGGAGCCGGTAGTTTCGTGGGCAAGAGGCTGGTGGGGGCTTC
GAGGGCTGCCTTGAACGCGCTGTACCTTACCCGATCCCCGAATCGCTCGG
AGTCCGTGCAATCAAATGATTACATGACTCCGGGCAGAACCCACAAAGGA
CACCGCCAGTCTCAGGGAAACGTGATAGGGAACCGGTTGGGCTTACCCGC
CGCGGCTGCTTCGGCTCACTCGGTGCTACGCGGTTTCGCTCCTGGAGAAG
GTGGCGGCAGCAGGGGAAGCTGGGGCAGCGCCAAAAGCTTTGACTTCAGC
CCGTCGGCGAACGCTACTCCTGTAGATTCTACGACTTCTACGACGAGTGC
TCACCCGAGGATCAGAAAAGGATATCTTCTCATGCTGCGG
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