mRNA_A-nodosum_M_contig875.29.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig875.29.1
Unique NamemRNA_A-nodosum_M_contig875.29.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig875.29.1 vs. uniprot
Match: D8LIA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA1_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 2.940e-50
Identity = 91/136 (66.91%), Postives = 108/136 (79.41%), Query Frame = 1
Query:    7 AKPPESGGFVGLKSQGLTCYMNAVLQQLFMAPGFRQAILSAKMPRRKLEDFPRELVGRRVSLPQEAGGFLEACVMAYNEQTGDHRIRYDSKEEFCLRLGEGGGRPGKETGAVSIVWRDRSSS-GVEG--NTMTQDE 405
            AK P+SGGFVGLK+QG TCYMN++LQQLFM P  R+ IL AK+PRR L+DFPRELVGRRV++  E GG +EA V +YNE++G+H IRYD+K+E   RLG GGGRPGKETGAVS+VW D  SS G EG   TMT DE
Sbjct: 1205 AKRPQSGGFVGLKNQGCTCYMNSLLQQLFMVPALRKGILEAKLPRRNLQDFPRELVGRRVAVQWETGGSVEAYVHSYNERSGEHVIRYDAKDEVTFRLGPGGGRPGKETGAVSLVWGDSPSSRGGEGMGKTMTPDE 1340          
BLAST of mRNA_A-nodosum_M_contig875.29.1 vs. uniprot
Match: A0A6H5KKZ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ1_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 7.510e-50
Identity = 91/136 (66.91%), Postives = 107/136 (78.68%), Query Frame = 1
Query:    7 AKPPESGGFVGLKSQGLTCYMNAVLQQLFMAPGFRQAILSAKMPRRKLEDFPRELVGRRVSLPQEAGGFLEACVMAYNEQTGDHRIRYDSKEEFCLRLGEGGGRPGKETGAVSIVWRDRSSS-GVEG--NTMTQDE 405
            AK P+SGGFVGLK+QG TCYMN++LQQLFM P  R+ IL AK+PRR L+DFP ELVGRRV++  E GG +EA V +YNE+TG+H IRYD+K+E   RLG GGGRPGKETGAVS+VW D  SS G EG   TMT DE
Sbjct: 2009 AKRPQSGGFVGLKNQGCTCYMNSLLQQLFMVPALRKCILEAKLPRRNLQDFPLELVGRRVAVQWETGGSVEAYVHSYNERTGEHVIRYDAKDEVTFRLGPGGGRPGKETGAVSLVWGDSPSSRGGEGMGKTMTPDE 2144          
BLAST of mRNA_A-nodosum_M_contig875.29.1 vs. uniprot
Match: A0A7S3Y977_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y977_HETAK)

HSP 1 Score: 97.1 bits (240), Expect = 1.030e-22
Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    7 AKPPESGGFVGLKSQGLTCYMNAVLQQLFMAPGFRQAILSAKMPRRKLEDFPRE-LVGRRVSLPQEAGGFLEACVMAYNEQTGDHRIRYDSKEEFCLRLGEGGGRPGKETGAVSIV 351
            AKPP +  +VGLK+QG TCYMN++LQ LFM P  RQ +LSA++ +    + P E L GR + +  E G +L+A V+ Y+ +TG H ++Y  +EE  L L EG  R GKETGA  + 
Sbjct:   63 AKPPGTA-YVGLKNQGCTCYMNSLLQNLFMQPALRQCVLSAEVKKTWQVNLPPEALQGRMLKVEWENGNWLDALVVNYDPRTGRHTLKYADEEEAQLALAEG--RQGKETGAHRLA 175          
BLAST of mRNA_A-nodosum_M_contig875.29.1 vs. uniprot
Match: K8Z0L3_NANGC (Ubiquitin carboxyl-terminal hydrolase 24 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z0L3_NANGC)

HSP 1 Score: 84.3 bits (207), Expect = 2.540e-16
Identity = 52/131 (39.69%), Postives = 75/131 (57.25%), Query Frame = 1
Query:    4 HAKPPESGGFVGLKSQGLTCYMNAVLQQLFMAPGFRQAILSAKMPRRKL---EDF-PRELVGRRVSLP---QEAGGFLEACVMAYNEQTGDHRIRYDS--------KEEFCLRLGEGGGRPGKETGAVSIV 351
            H      G +VGL++QG TCYMN++LQQLFM P  R AIL+A++ RR++   E F   EL+GR++ +    +E    +EA V +++  TG H I+YD         K    +RL    GR GKETG   ++
Sbjct:  466 HETKSYPGQYVGLRNQGCTCYMNSLLQQLFMVPRLRDAILAARVKRRRMVSGEMFRDEELIGRQILVDWETEEGTVKMEATVTSFDGSTGKHTIKYDGAGGANGNEKINASVRLKLREGRAGKETGHFQVI 596          
BLAST of mRNA_A-nodosum_M_contig875.29.1 vs. uniprot
Match: A0A4D9D1L0_9STRA (USP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1L0_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.630e-16
Identity = 52/131 (39.69%), Postives = 75/131 (57.25%), Query Frame = 1
Query:    4 HAKPPESGGFVGLKSQGLTCYMNAVLQQLFMAPGFRQAILSAKMPRRKL---EDF-PRELVGRRVSLP---QEAGGFLEACVMAYNEQTGDHRIRYDS--------KEEFCLRLGEGGGRPGKETGAVSIV 351
            H      G +VGL++QG TCYMN++LQQLFM P  R AIL+A++ RR++   E F   EL+GR++ +    +E    +EA V +++  TG H I+YD         K    +RL    GR GKETG   ++
Sbjct: 2143 HETKSYPGQYVGLRNQGCTCYMNSLLQQLFMVPRLRDAILAARVKRRRMVSGEMFRDEELIGRQILVDWETEEGTVKMEATVTSFDGSTGKHTIKYDGAGGANGNEKINASVRLKLREGRAGKETGHFQVI 2273          
BLAST of mRNA_A-nodosum_M_contig875.29.1 vs. uniprot
Match: A0A836CEK4_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEK4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.810e-16
Identity = 56/133 (42.11%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   28 GFVGLKSQGLTCYMNAVLQQLFMAPGFRQAILSAK-MPR---RKLEDFPRELVGRRVSLPQEAGGFLEACVMAYNEQTGDHRIRY------------------DSKEEFCLRLGEG--------GGRPGKETG 336
            G+VGLK+QG TCYMN++LQQLFM P FR+AI SA  MPR     L + P + VGRR+ +  E+   ++A VM Y   TG H IRY                  ++  E     G+G         GRPGKETG
Sbjct:  262 GYVGLKNQGCTCYMNSLLQQLFMVPAFREAICSAAPMPRPSDASLPEDPAQWVGRRLMMQFESQQPMQAKVMGYQPDTGMHTIRYTTIRPPATAXXXXXXXXXEASAENSDDEGQGIVHTFVLRSGRPGKETG 394          
BLAST of mRNA_A-nodosum_M_contig875.29.1 vs. uniprot
Match: A0A7S1ZZ10_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZZ10_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.260e-13
Identity = 55/166 (33.13%), Postives = 80/166 (48.19%), Query Frame = 1
Query:    4 HAKPPESGG---------FVGLKSQGLTCYMNAVLQQLFMAPGFRQAILSAKMPRRK------LEDFPRELVGRRVSLPQEAGGFLEACVMAYNEQTGDHRIRYDSKE--------------EFCLRLGE--------GGGRPGKETGAVSIVWRDRSSSGVEGNT 390
            +A P E GG         + GL++QG TCYMN+VLQQLFM P  R+ +  A +P         +     ELVG+++SL  ++G    A V  ++E+TG H IRY   +              ++   L +          GRPGKETGA  ++     ++GV  NT
Sbjct:   51 NASPDEGGGARLSSTATKYSGLRNQGCTCYMNSVLQQLFMMPALRKNLCDATLPSDLRSSGGGITAKGAELVGKKISLHWDSGVSYNAMVEGFDEETGMHTIRYSPLQISGTVDYHSQPIHPDYVAFLPDEMPDEFFLSEGRPGKETGAFELI-----ATGVMDNT 211          
BLAST of mRNA_A-nodosum_M_contig875.29.1 vs. uniprot
Match: A0A7S3Q2Z7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q2Z7_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 8.270e-13
Identity = 48/136 (35.29%), Postives = 68/136 (50.00%), Query Frame = 1
Query:   31 FVGLKSQGLTCYMNAVLQQLFMAPGFRQAILSAKMPRRKLEDFP------RELVGRRVSLPQEAGGFLEACVMAYNEQTGDHRIRY-------------DSKEEFCLRLGE-----------GGGRPGKETGAVSI 348
            + GL++QG TCYMN+VLQQLFM P  R+ + SA +P +   +        ++LVG+++SL  E G   EA V++++E TG H IRY                E  C  +               GRPGKETG   +
Sbjct: 1689 YSGLRNQGCTCYMNSVLQQLFMMPALREKLSSATIPSQLRSEGGTAKAQGKDLVGKQISLQWENGTCYEAEVLSFSEDTGMHIIRYRLLRLPSENTNTHTESESSCSNVSVLPQEFPDEFILSEGRPGKETGLFEM 1824          
BLAST of mRNA_A-nodosum_M_contig875.29.1 vs. uniprot
Match: A0A1Z5K2Z6_FISSO (Ubiquitin carboxyl-terminal hydrolase 9/24 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2Z6_FISSO)

HSP 1 Score: 72.8 bits (177), Expect = 2.860e-12
Identity = 52/154 (33.77%), Postives = 74/154 (48.05%), Query Frame = 1
Query:   22 SGGFVGLKSQGLTCYMNAVLQQLFMAPGFRQAILSAKMPRR-KLEDFP-----RELVGRRVSLPQEAGGFLEACVMAYNEQTGDHRIRY------------------------DSKEEFCLRLGEGGGRPGKETGAVSIVWRDRSSSGVEGNTM 393
            S  + GL++QG TCYMN+VLQQLFM P    ++ +A +P   +    P      ELVG+++SL  ++G   +A V ++N+ TG H I+Y                           +EF L      GRPGKETG   +V     SS  + N M
Sbjct: 1638 SSKYSGLRNQGCTCYMNSVLQQLFMMPDILDSMCAAPLPTALRSSSTPATPGGEELVGKKISLQWDSGVSYDAVVESFNQSTGAHIIQYLPIQIATPRTTHQAQHEESSPIPPSLPDEFVLI----NGRPGKETGIFELVG---GSSQADANLM 1784          
BLAST of mRNA_A-nodosum_M_contig875.29.1 vs. uniprot
Match: A0A7S2UEF9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEF9_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.800e-12
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   31 FVGLKSQGLTCYMNAVLQQLFMAPGFRQAILSAKMPR--------RKLEDFPRELVGRRVSLPQEAGGFLEACVMAYNEQTGDHRIRY 270
            + GL++QG TCYMN+VLQQLFM PG R+ + SA +P          +++    EL+G+ +SL  ++G    A V  YN++TG H IRY
Sbjct:  296 YSGLRNQGCTCYMNSVLQQLFMMPGLRKNLCSATVPSSLRTSGGGNRMKGV--ELIGKNISLQWDSGVSYPALVEGYNKETGAHTIRY 381          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig875.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIA1_ECTSI2.940e-5066.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKZ1_9PHAE7.510e-5066.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S3Y977_HETAK1.030e-2246.55Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K8Z0L3_NANGC2.540e-1639.69Ubiquitin carboxyl-terminal hydrolase 24 (Fragment... [more]
A0A4D9D1L0_9STRA2.630e-1639.69USP domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A836CEK4_9STRA4.810e-1642.11USP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S1ZZ10_9STRA1.260e-1333.13Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3Q2Z7_9STRA8.270e-1335.29Hypothetical protein (Fragment) n=2 Tax=Chaetocero... [more]
A0A1Z5K2Z6_FISSO2.860e-1233.77Ubiquitin carboxyl-terminal hydrolase 9/24 n=2 Tax... [more]
A0A7S2UEF9_9STRA3.800e-1243.18Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig875contigA-nodosum_M_contig875:252804..254619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LIA1
PFAMsUCH
Model size409
Max annot lvl2759|Eukaryota
KEGG koko:K11840,ko:K11869
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.82e-51
EggNOG OGsCOG5077@1|root,KOG1866@2759|Eukaryota
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
Cds size405
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870276.0329728-CDS-A-nodosum_M_contig875:252805..2529601680870276.0329728-CDS-A-nodosum_M_contig875:252805..252960Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig875 252806..252960 -
1680870276.0456934-CDS-A-nodosum_M_contig875:253965..2541281680870276.0456934-CDS-A-nodosum_M_contig875:253965..254128Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig875 253966..254128 -
1680870276.0562024-CDS-A-nodosum_M_contig875:254532..2546191680870276.0562024-CDS-A-nodosum_M_contig875:254532..254619Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig875 254533..254619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig875.29.1prot_A-nodosum_M_contig875.29.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig875 252806..254619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig875.29.1

>prot_A-nodosum_M_contig875.29.1 ID=prot_A-nodosum_M_contig875.29.1|Name=mRNA_A-nodosum_M_contig875.29.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=135bp
RHAKPPESGGFVGLKSQGLTCYMNAVLQQLFMAPGFRQAILSAKMPRRKL
EDFPRELVGRRVSLPQEAGGFLEACVMAYNEQTGDHRIRYDSKEEFCLRL
GEGGGRPGKETGAVSIVWRDRSSSGVEGNTMTQDE
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mRNA from alignment at A-nodosum_M_contig875:252804..254619-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig875.29.1 ID=mRNA_A-nodosum_M_contig875.29.1|Name=mRNA_A-nodosum_M_contig875.29.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1816bp|location=Sequence derived from alignment at A-nodosum_M_contig875:252804..254619- (Ascophyllum nodosum dioecious)
CGACACGCCAAGCCTCCAGAAAGCGGAGGCTTCGTCGGCCTCAAGAGTCA AGGCCTTACCTGTTACATGAATGCTGTACTACAACAGGCAAATACTTTTT GCTTTTTGCTTCTGTTCGATTTTCTTCTATTGCACCTCCCTCCCCCCCCC AGTTCGATAATGTCGATGATGTCGATGATGTTGATGACGTCGGTGATGTC GGTGATGATAACTCTGGGGGGTATGGGATGAGCAGTTCGACGTGCAGTGC TCTTGTGGCGTTTTTTGTCCCTGGAAAGATTTGACATTCTACAAAATCTT TTCTATCCAGCGCGAATATTTTGTGCGGTTTTGTTGAAGAAAGTTCGCGA ATTCCGTACTAAAGCTTGTGCTAGACACGTAAACCATTCCGCCGCAATAC AGACATTATTCTAGATACAGACCAAGCTAAACGTAATATAATTCTCGTAA AGTATGATTTTCTCCAAACCGTGCACCTGTTTTTCTGGCAGCTTTTCATG GCGCCAGGGTTTCGCCAGGCGATATTATCGGCGAAGATGCCACGCCGAAA GCTGGAAGACTTTCCGCGGGAGCTGGTCGGCAGGCGCGTGTCGCTCCCGC AGGAAGCCGGAGGCTTCCTGGAGGCGTGCGTGATGGCTTACAACGAGCAG ACGGGTGCGCGCCGTCCTACTTGTTTCATCCTACGGCGTGTTGTGGCGTG TTGTGGAGTGTTGTGGCGTGTTGTGGAGTGGAGTGGCGTGTTGTGGAGTG GAGTGGAGTGGAGTGGAGGCTTTTCGCGTTCCTTGTCTTACACCGCGCTC GCGCTCGTGTCGCTCTTGCCTTGTCCGGAGTTTGTTTTTGTTTTTGTTGT TTTTCTGTAACAGTAGTTCCATGTTTTGTAGTTTTTTTTAATGTGTGTGT GTGGTATTGTGCATGTCTAGGTTCCTGTTGTACTTTTTAAGTACTTTTGC TTTTGATACGTGGGTGTCAAATATTTTCACGTACCAATAAAGGAGTACGT GTACTGATGATGGCTGTTATTATACTGTTCTTATAGTTAATACATATATG GGTGGAGTTAACAGGCGCCAGATTTGACGCTGGCTGGCAGGCCAGGCCAG GCAGACACAATGTATAGAAATCTATAAAACGAACACGTTTCCACTTTTCA GGTTAGGAAGATGTAAGTATATATCCACATTTCTCAGGATCTTCTTTTAT ACTGTACTCTGAATAGGTAAACTTTCCAGTGAACAACCGTTACCTATTTA TGGCTTGGAGAGAGGGGGTGAAATAGGGTTACCGTTACCGTTACCATTAC TGTTCTGTACCATAGACCACCGCGCGGTTACCCGAATCAGCTTACCTTAC TTTACTGCTGGACACTAGTAATAGAAAAAAAATACCCCCACGCTTTGGCA CCCACGCTAACCTTTTGACGCTTAAGTATAACTTACACTAAAAACACCTT CAGTACTGTACATCGTTACTTAGCATTACACTTAGGCCTACAAGTACACT CGCACCTTTACCTTTAGATTCATTATGGCTCTCAACTTTTGTTAATTTAT GTGAAATTACACCTCACTATAATAGTAATAATTGAAATACAGTCAACCAG TATGAGCCTAGTAATAGTAATATTAATAGTTTCTTCTCTTTGGATGCGTG CACGCGCAGGCGATCACCGGATTCGCTACGACTCCAAGGAGGAGTTCTGC CTCCGCCTGGGGGAAGGGGGCGGACGTCCGGGCAAGGAAACCGGAGCCGT TAGCATAGTCTGGAGAGACAGGTCGTCCTCCGGTGTCGAGGGAAATACCA TGACCCAGGACGAGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig875:252804..254619-

>mRNA_A-nodosum_M_contig875.29.1 ID=mRNA_A-nodosum_M_contig875.29.1|Name=mRNA_A-nodosum_M_contig875.29.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=405bp|location=Sequence derived from alignment at A-nodosum_M_contig875:252804..254619- (Ascophyllum nodosum dioecious)
CGACACGCCAAGCCTCCAGAAAGCGGAGGCTTCGTCGGCCTCAAGAGTCA
AGGCCTTACCTGTTACATGAATGCTGTACTACAACAGCTTTTCATGGCGC
CAGGGTTTCGCCAGGCGATATTATCGGCGAAGATGCCACGCCGAAAGCTG
GAAGACTTTCCGCGGGAGCTGGTCGGCAGGCGCGTGTCGCTCCCGCAGGA
AGCCGGAGGCTTCCTGGAGGCGTGCGTGATGGCTTACAACGAGCAGACGG
GCGATCACCGGATTCGCTACGACTCCAAGGAGGAGTTCTGCCTCCGCCTG
GGGGAAGGGGGCGGACGTCCGGGCAAGGAAACCGGAGCCGTTAGCATAGT
CTGGAGAGACAGGTCGTCCTCCGGTGTCGAGGGAAATACCATGACCCAGG
ACGAG
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