mRNA_A-nodosum_M_contig875.24.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig875.24.1
Unique NamemRNA_A-nodosum_M_contig875.24.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig875.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig875contigA-nodosum_M_contig875:215502..216090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size589
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870274.2035217-UTR-A-nodosum_M_contig875:215501..2156131680870274.2035217-UTR-A-nodosum_M_contig875:215501..215613Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig875 215502..215613 -
1680870274.229955-UTR-A-nodosum_M_contig875:215958..2160901680870274.229955-UTR-A-nodosum_M_contig875:215958..216090Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig875 215959..216090 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870274.2166393-CDS-A-nodosum_M_contig875:215613..2159581680870274.2166393-CDS-A-nodosum_M_contig875:215613..215958Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig875 215614..215958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig875.24.1prot_A-nodosum_M_contig875.24.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig875 215614..215958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig875.24.1

>prot_A-nodosum_M_contig875.24.1 ID=prot_A-nodosum_M_contig875.24.1|Name=mRNA_A-nodosum_M_contig875.24.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=115bp
MLTVGCENTVVKVLKTSGDTVCAAFVLADVVVNLIIERKWWGSICRLVDI
NSFQIRDQTFRFGIIVFAVIFPQRMVITLDNVKVYQVHSVISCGHVYDIH
DHARVMWCFVLTAQ*
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mRNA from alignment at A-nodosum_M_contig875:215502..216090-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig875.24.1 ID=mRNA_A-nodosum_M_contig875.24.1|Name=mRNA_A-nodosum_M_contig875.24.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=589bp|location=Sequence derived from alignment at A-nodosum_M_contig875:215502..216090- (Ascophyllum nodosum dioecious)
ACAGTGCAAGAAAAGCCCGCATCGACGAGCGACGACAGGTGAGACCTGTG
TTCGTCAGAGTTTACGAGTTGTTGGCTTCTCGTCGTGGGTCCCTTGGGGT
GTAATACCTACAAGCAACATGTATAAACTTCCATGCTGACCGTCGGCTGT
GAAAACACTGTTGTGAAAGTACTCAAGACCAGCGGTGATACGGTATGTGC
CGCTTTTGTTCTGGCCGATGTAGTAGTTAACCTGATTATCGAGCGCAAAT
GGTGGGGTTCTATCTGTCGTCTAGTAGATATAAATTCGTTTCAGATTCGG
GACCAGACCTTTCGCTTTGGAATAATTGTTTTTGCTGTAATATTCCCACA
ACGAATGGTGATAACTCTTGACAATGTTAAAGTGTACCAGGTACACAGTG
TTATAAGCTGTGGACATGTCTACGACATTCACGATCACGCGAGAGTCATG
TGGTGTTTCGTGCTTACGGCCCAATGACGTCATACCCATTCAAACATTGT
AACGTAACTTTCCCCTTAAGAAGATGCGGATGTTCGGAAGTTTCAATGCG
CTGCTCTGCTAATGGTTTCTTCGTAATAAGAAAATGAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig875:215502..216090-

>mRNA_A-nodosum_M_contig875.24.1 ID=mRNA_A-nodosum_M_contig875.24.1|Name=mRNA_A-nodosum_M_contig875.24.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=345bp|location=Sequence derived from alignment at A-nodosum_M_contig875:215502..216090- (Ascophyllum nodosum dioecious)
ATGCTGACCGTCGGCTGTGAAAACACTGTTGTGAAAGTACTCAAGACCAG
CGGTGATACGGTATGTGCCGCTTTTGTTCTGGCCGATGTAGTAGTTAACC
TGATTATCGAGCGCAAATGGTGGGGTTCTATCTGTCGTCTAGTAGATATA
AATTCGTTTCAGATTCGGGACCAGACCTTTCGCTTTGGAATAATTGTTTT
TGCTGTAATATTCCCACAACGAATGGTGATAACTCTTGACAATGTTAAAG
TGTACCAGGTACACAGTGTTATAAGCTGTGGACATGTCTACGACATTCAC
GATCACGCGAGAGTCATGTGGTGTTTCGTGCTTACGGCCCAATGA
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