mRNA_A-nodosum_M_contig875.11.1 (mRNA) Ascophyllum nodosum dioecious
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5LDM1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDM1_9PHAE) HSP 1 Score: 192 bits (487), Expect = 7.890e-50 Identity = 154/447 (34.45%), Postives = 195/447 (43.62%), Query Frame = 1
Query: 1009 NVEAVGPNGLPGELLKPGLRQDRSILLELHRLFALI*CEGKAPQQWKDAVIPALHKKGVKTECGNYRGISLVPHAE------------------------------TKVLNRTGVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDPR-QADGPEGTADVDGTG-----AG-------------------------------------------------------------------------------------YGLRLSCRVGWTRACWTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIE-AQRKRPDQWMTSYNRALEVAGCE-SIETTLRTKRLLWAGAPIRMRGGRLPNKANYARKS*RCIAQRTGWEGERVDRL 1980
N +AVGP+ LP EL+K L D+ +L E H + + G PQQWKDA I L KKG ECGNYRGISLV HA +L R GV P+M+AV FH+GMRA VR DDG S+WF+V Q LR G L+PLL N FFAA+L V V F KDP+ AD + V+ TG AG YG S R G+ R KW + LK R+++AE+ E LLYGC SW+L EHY+KL HRQ L R I ++RKR D+ + SY +AL AGCE +IE T+R +R+ +AG +RM RLP + + + R G E + V RL
Sbjct: 3 NRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILAEEQRGYCGVDMLRRYGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTADMVKIGTQVEYTGKKGRSAGKKTTVVTVAEALWTMLYADDAAIVSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGPTASSRSGY------RLKWR--------RADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL-SYAQALIQAGCEETIEATVRKRRMCFAGFVLRMEDSRLPKRMLLGAMA-GGVGYRGGQESDWVSRL 433
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5KKB2_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB2_9PHAE) HSP 1 Score: 168 bits (425), Expect = 5.550e-40 Identity = 155/493 (31.44%), Postives = 197/493 (39.96%), Query Frame = 1
Query: 1009 NVEAVGPNGLPGELLKPGLRQDRSILLELHRLFALI*CEGKAPQQWKDAVIPALHKKGVKTECGNYRGISLVPHAE--------------------------------------------------------------TK------------VLNRTGVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDPR-QADGPEGTADVDGTG------------------------------------------------AG-YGLRLS-----------------------------------------CRVG------WTRAC--WTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIE-AQRKRPDQWMTSYNRALEVAGCE-SIETTLRTKRLLWAGAPIRMRGGRLPNKANYARKS*RCIAQRTGWEG 1962
N +AVGP+ LP EL+K L DR L E H + + G PQQWKDA I L KKG ECGNYRGISLV HA TK VL R GV P+M+AV FH+GMRA VR DDG S+WF+V Q LR G L+PLL N F AA+ V V F KDP+ AD + V+ TG AG +GL +S C G +R C W + + D+ + LK R+++AE+ + LLYGC SW+L EHY+KL HRQ L R I ++RKR D+ + SY +AL AGCE +IE T+R +RL +AG +RM RLP + +A TG+ G
Sbjct: 83 NRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFSAAMRMVAVTEFDKDPKVTADMIKIATRVECTGKRGRSAGKKAMMVTVAEALWDMLYADDAAIVSLTPESLEKMMSIIVRVAGLFGLMVSEPKTEIMCMLPKGLGERPFAVSAAGQTYKQTDRFVYLGRTICADGKVDREITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL-SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLG-----AMAGGTGYRG 569
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE) HSP 1 Score: 169 bits (429), Expect = 9.330e-40 Identity = 157/499 (31.46%), Postives = 200/499 (40.08%), Query Frame = 1
Query: 1009 NVEAVGPNGLPGELLKPGLRQDRSILLELHRLFALI*CEGKAPQQWKDAVIPALHKKGVKTECGNYRGISLVPHAE--------------------------------------------------------------TK------------VLNRTGVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDPR-QADGPEGTADVDGTG------------------------------------------------AG-YGLRLS-----------------------------------------CRVG------WTRAC--WTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIE-AQRKRPDQWMTSYNRALEVAGCE-SIETTLRTKRLLWAGAPIRMRGGRLPNKANYARKS*RCIAQRTGWEGERVDRL 1980
N +AVGP+ LP EL+K L DR L E H + + G PQQWKDA I L KKG ECGNYRGISLV HA TK VL R GV P+M+AV FH+GMRA VR DDG S+WF+V Q LR G L+PLL N F AA+ V V F KDP+ AD + V+ TG AG +GL +S C G +R C W + + D+ + LK R+++AE+ + LLYGC SW+L EHY+KL HRQ L R I ++RKR D+ + SY +AL AGCE +IE T+R +RL +AG +RM RLP + + + R G E + V RL
Sbjct: 499 NRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLERFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFSAAMRMVAVTEFDKDPKVTADMIKIATRVECTGKRGRSAGKKAMMVTVAEALWDMLYADDAAIVSLTPESLEKMMSIIVRVAGLFGLMVSEPKTEIMCMLPKGLGERPFAVSAAGQTYKQTDRFVYLGRTICADGKVDREITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL-SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMA-GGVGYRGGQESDWVSRL 995
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE) HSP 1 Score: 168 bits (425), Expect = 2.330e-39 Identity = 155/493 (31.44%), Postives = 197/493 (39.96%), Query Frame = 1
Query: 1009 NVEAVGPNGLPGELLKPGLRQDRSILLELHRLFALI*CEGKAPQQWKDAVIPALHKKGVKTECGNYRGISLVPHAE--------------------------------------------------------------TK------------VLNRTGVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDPR-QADGPEGTADVDGTG------------------------------------------------AG-YGLRLS-----------------------------------------CRVG------WTRAC--WTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIE-AQRKRPDQWMTSYNRALEVAGCE-SIETTLRTKRLLWAGAPIRMRGGRLPNKANYARKS*RCIAQRTGWEG 1962
N +AVGP+ LP EL+K L DR L E H + + G PQQWKDA I L KKG ECGNYRGISLV HA TK VL R GV P+M+AV FH+GMRA VR DDG S+WF+V Q LR G L+PLL N F AA+ V V F KDP+ AD + V+ TG AG +GL +S C G +R C W + + D+ + LK R+++AE+ + LLYGC SW+L EHY+KL HRQ L R I ++RKR D+ + SY +AL AGCE +IE T+R +RL +AG +RM RLP + +A TG+ G
Sbjct: 361 NRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFSAAMRMVAVTEFDKDPKVTADMIKIATRVECTGKRGRSAGKKAMMVTVAEALWDMLYADDAAIVSLTPESLEKMMSIIVRVAGLFGLMVSEPKTEIMCMLPKGLGERPFAVSAAGQTYKQTDRFVYLGRTICADGKVDREITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL-SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLG-----AMAGGTGYRG 847
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 168 bits (425), Expect = 3.270e-39 Identity = 155/493 (31.44%), Postives = 197/493 (39.96%), Query Frame = 1
Query: 1009 NVEAVGPNGLPGELLKPGLRQDRSILLELHRLFALI*CEGKAPQQWKDAVIPALHKKGVKTECGNYRGISLVPHAE--------------------------------------------------------------TK------------VLNRTGVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDPR-QADGPEGTADVDGTG------------------------------------------------AG-YGLRLS-----------------------------------------CRVG------WTRAC--WTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIE-AQRKRPDQWMTSYNRALEVAGCE-SIETTLRTKRLLWAGAPIRMRGGRLPNKANYARKS*RCIAQRTGWEG 1962
N +AVGP+ LP EL+K L DR L E H + + G PQQWKDA I L KKG ECGNYRGISLV HA TK VL R GV P+M+AV FH+GMRA VR DDG S+WF+V Q LR G L+PLL N F AA+ V V F KDP+ AD + V+ TG AG +GL +S C G +R C W + + D+ + LK R+++AE+ + LLYGC SW+L EHY+KL HRQ L R I ++RKR D+ + SY +AL AGCE +IE T+R +RL +AG +RM RLP + +A TG+ G
Sbjct: 611 NRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFSAAMRMVAVTEFDKDPKVTADMIKIATRVECTGKRGRSAGKKAMMVTVAEALWDMLYADDAAIVSLTPESLEKMMSIIVRVAGLFGLMVSEPKTEIMCMLPKGLGERPFAVSAAGQTYKQTDRFVYLGRTICADGKVDREITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL-SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLG-----AMAGGTGYRG 1097
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5KDI8_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI8_9PHAE) HSP 1 Score: 168 bits (425), Expect = 3.580e-39 Identity = 155/493 (31.44%), Postives = 197/493 (39.96%), Query Frame = 1
Query: 1009 NVEAVGPNGLPGELLKPGLRQDRSILLELHRLFALI*CEGKAPQQWKDAVIPALHKKGVKTECGNYRGISLVPHAE--------------------------------------------------------------TK------------VLNRTGVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDPR-QADGPEGTADVDGTG------------------------------------------------AG-YGLRLS-----------------------------------------CRVG------WTRAC--WTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIE-AQRKRPDQWMTSYNRALEVAGCE-SIETTLRTKRLLWAGAPIRMRGGRLPNKANYARKS*RCIAQRTGWEG 1962
N +AVGP+ LP EL+K L DR L E H + + G PQQWKDA I L KKG ECGNYRGISLV HA TK VL R GV P+M+AV FH+GMRA VR DDG S+WF+V Q LR G L+PLL N F AA+ V V F KDP+ AD + V+ TG AG +GL +S C G +R C W + + D+ + LK R+++AE+ + LLYGC SW+L EHY+KL HRQ L R I ++RKR D+ + SY +AL AGCE +IE T+R +RL +AG +RM RLP + +A TG+ G
Sbjct: 732 NRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFSAAMRMVAVTEFDKDPKVTADMIKIATRVECTGKRGRSAGKKAMMVTVAEALWDMLYADDAAIVSLTPESLEKMMSIIVRVAGLFGLMVSEPKTEIMCMLPKGLGERPFAVSAAGQTYKQTDRFVYLGRTICADGKVDREITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL-SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLG-----AMAGGTGYRG 1218
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5LM52_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LM52_9PHAE) HSP 1 Score: 167 bits (422), Expect = 5.340e-39 Identity = 154/493 (31.24%), Postives = 198/493 (40.16%), Query Frame = 1
Query: 1009 NVEAVGPNGLPGELLKPGLRQDRSILLELHRLFALI*CEGKAPQQWKDAVIPALHKKGVKTECGNYRGISLVPHAE--------------------------------------------------------------TK------------VLNRTGVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDPR-QADGPEGTADVDGTG------------------------------------------------AG-YGLRLS-----------------------------------------CRVG------WTRAC--WTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIE-AQRKRPDQWMTSYNRALEVAGCE-SIETTLRTKRLLWAGAPIRMRGGRLPNKANYARKS*RCIAQRTGWEG 1962
N +AVGP+ LP EL+K L D+ +L E H + + G PQQWKDA I L KKG ECGNYRGISLV HA TK VL R GV P+M+AV FH+GMRA VR DDG S+WF+V Q LR G L+PLL N F AA+ V V F KDP+ AD + V+ TG AG +GL +S C G +R C W + + D+ + LK R+++AE+ + LLYGC SW+L EHY+KL HRQ L R I ++RKR D+ + SY +AL AGCE +IE T+R +RL +AG +RM RLP + +A TG+ G
Sbjct: 348 NRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFSAAMRMVAVTEFDKDPKVTADMIKIATRVECTGKRGRSAGKKAMMVTVAEALWDMLYADDAAIVSLTPESLEKMMSIIVRVAGLFGLMVSEPKTEIMCMLPKGLGERPFAVSAAGQTYKQTDRFVYLGRTICADGKVDREITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL-SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLG-----AMAGGTGYRG 834
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5K556_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K556_9PHAE) HSP 1 Score: 157 bits (396), Expect = 1.060e-36 Identity = 113/344 (32.85%), Postives = 155/344 (45.06%), Query Frame = 1
Query: 1006 KNVEAVGPNGLPGELLKPGLRQDRS-ILLELHRLFALI*CEGKAPQQWKDAVIPALHKKGVKTECGNYRGISLVPHA--------------------------------------------------------------------------ETKVLNRTGVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDP--------RQADGPEGTAD---VDGTGAGYGLRLSCRVGW-TRACWTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIEAQRKRPDQ 1776
KN +A G + LP ELLK + D +L LH + + G ++WKDA + L+KKG ++ C NYRGISL+ H + KVL R G+ +++ V QFHDG+RA VR DDG SDWF V Q +R G VLSPLL N FFA VL V+V RFSKD D T + + G +G L+ + + +R W + Y R L D+P+ LK R+++AE EALLYGC +W+ HY LR++H ++LLR+I +P Q
Sbjct: 236 KNWKAPGHDSLPAELLK--IDDDEPFVLAHLHTILVKVWNGGDISREWKDATVKVLYKKGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMQWKVLARAGIPAKLIEVIRQFHDGLRARVRMDDGELSDWFFVTQGVRQGCVLSPLLSNIFFAEVLEVVVIRFSKDDVVLRSLVCLDEDTXAQTTEFRYIGGLVNEHG-DLTREINYRSRGAWACLRRYGRALFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSSLSGHYQTLRSIHHRLLLRVIGPHSAKPLQ 576
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5K6B3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B3_9PHAE) HSP 1 Score: 149 bits (376), Expect = 1.040e-35 Identity = 125/358 (34.92%), Postives = 155/358 (43.30%), Query Frame = 1
Query: 1009 NVEAVGPNGLPGELLKPGLRQDRSILLELHRLFALI*CEGKAPQQWKDAVIPALHKKGVKTECGNYRGISLVPHAE--------------------------------------------------------------TK------------VLNRTGVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDPRQADGPEGTADVDGTGAGYGLRLSCRVGWTRACWTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIE-AQRKRPDQWMTSYNRALEVAGCE-SIETTLRTKRL 1854
N + VGP+ LP EL+K L D+ +L E H + G PQQWKDA I L KKG ECGNYRGISLV HA TK VL R GV P+M+AV FH+GMRA VR DDG S+WF+V Q G T L R S D G AD + T SCR W C+ R + D+ + LK R+++AE+ E LLYGC SW+L EHY+KL HRQ L R I ++RKR D+ + Y + L AGCE +IE T+R +RL
Sbjct: 3 NRKTVGPDDLPAELIKLFLDGDQGLLREFHATVMDVRQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHASKVLLKVVATRLSPYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQ----GSAAGQTYKQTDRFVYLG---RTISAD--------GKADREITSR------SCRA-WK--CYRRNS---ASMYDRRRANRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLP-YAQTLMQAGCEETIEATVRKRRL 332
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5JS19_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS19_9PHAE) HSP 1 Score: 145 bits (366), Expect = 7.300e-34 Identity = 99/292 (33.90%), Postives = 131/292 (44.86%), Query Frame = 1
Query: 1258 GVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDPRQADGPEGTADVDGTGAGYGLRLSCRVGW----------------------------------------------------------------------------TRACWTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIEAQRKRPDQWMTSYNRALEVAGCESIETTLRTKRLLWAGAPIRMRGGRLPNK 1905
G+ +M AV QFHDGMR VR DDG S WF V + LR G VLS LL N FFAAV++ + RFS+D + G GA L R W +RA W + Y ++L D+P LKTR+++AE EALLYGC +W RQ+ Y LRT+H ++LLR+I QR++ SY + L+ GC+S+ETT+R +RLL+AGA R GRLP +
Sbjct: 114 GIPEEMNAVIRQFHDGMRVRVRVDDGEFSAWFWVTEGLRQGCVLSSLLFNIFFAAVIDAVAIRFSEDDVILQNLVYLEEETGAGARTPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTVIVEVFEKFGLTVSEKKTETLLIGAKNKQXXXXXXXXSPLIIEAAGQREINYQSRAAWACIRRYGQDLFDKPNAPFRLKTRLLQAEAMEALLYGCMTWAPRQDQYRTLRTIHHRLLLRVIGYQREKGTYRQLSYAQTLKRVGCQSVETTIRQRRLLFAGALARQPDGRLPKR 405 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig875.11.1 >prot_A-nodosum_M_contig875.11.1 ID=prot_A-nodosum_M_contig875.11.1|Name=mRNA_A-nodosum_M_contig875.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=99bp MVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIEAQRKRPDQWMback to top mRNA from alignment at A-nodosum_M_contig875:141240..144321+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig875.11.1 ID=mRNA_A-nodosum_M_contig875.11.1|Name=mRNA_A-nodosum_M_contig875.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3082bp|location=Sequence derived from alignment at A-nodosum_M_contig875:141240..144321+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig875:141240..144321+ >mRNA_A-nodosum_M_contig875.11.1 ID=mRNA_A-nodosum_M_contig875.11.1|Name=mRNA_A-nodosum_M_contig875.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=297bp|location=Sequence derived from alignment at A-nodosum_M_contig875:141240..144321+ (Ascophyllum nodosum dioecious)back to top |