mRNA_A-nodosum_M_contig875.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig875.11.1
Unique NamemRNA_A-nodosum_M_contig875.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5LDM1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDM1_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 7.890e-50
Identity = 154/447 (34.45%), Postives = 195/447 (43.62%), Query Frame = 1
Query: 1009 NVEAVGPNGLPGELLKPGLRQDRSILLELHRLFALI*CEGKAPQQWKDAVIPALHKKGVKTECGNYRGISLVPHAE------------------------------TKVLNRTGVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDPR-QADGPEGTADVDGTG-----AG-------------------------------------------------------------------------------------YGLRLSCRVGWTRACWTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIE-AQRKRPDQWMTSYNRALEVAGCE-SIETTLRTKRLLWAGAPIRMRGGRLPNKANYARKS*RCIAQRTGWEGERVDRL 1980
            N +AVGP+ LP EL+K  L  D+ +L E H +   +   G  PQQWKDA I  L KKG   ECGNYRGISLV HA                                 +L R GV P+M+AV   FH+GMRA VR DDG  S+WF+V Q LR G  L+PLL N FFAA+L V V  F KDP+  AD  +    V+ TG     AG                                                                                     YG   S R G+      R KW         +    LK R+++AE+ E LLYGC SW+L  EHY+KL   HRQ L R I  ++RKR D+ + SY +AL  AGCE +IE T+R +R+ +AG  +RM   RLP +      +   +  R G E + V RL
Sbjct:    3 NRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILAEEQRGYCGVDMLRRYGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTADMVKIGTQVEYTGKKGRSAGKKTTVVTVAEALWTMLYADDAAIVSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGPTASSRSGY------RLKWR--------RADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL-SYAQALIQAGCEETIEATVRKRRMCFAGFVLRMEDSRLPKRMLLGAMA-GGVGYRGGQESDWVSRL 433          
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5KKB2_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB2_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 5.550e-40
Identity = 155/493 (31.44%), Postives = 197/493 (39.96%), Query Frame = 1
Query: 1009 NVEAVGPNGLPGELLKPGLRQDRSILLELHRLFALI*CEGKAPQQWKDAVIPALHKKGVKTECGNYRGISLVPHAE--------------------------------------------------------------TK------------VLNRTGVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDPR-QADGPEGTADVDGTG------------------------------------------------AG-YGLRLS-----------------------------------------CRVG------WTRAC--WTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIE-AQRKRPDQWMTSYNRALEVAGCE-SIETTLRTKRLLWAGAPIRMRGGRLPNKANYARKS*RCIAQRTGWEG 1962
            N +AVGP+ LP EL+K  L  DR  L E H +   +   G  PQQWKDA I  L KKG   ECGNYRGISLV HA                                                               TK            VL R GV P+M+AV   FH+GMRA VR DDG  S+WF+V Q LR G  L+PLL N F AA+  V V  F KDP+  AD  +    V+ TG                                                AG +GL +S                                         C  G       +R C  W   +     + D+ +    LK R+++AE+ + LLYGC SW+L  EHY+KL   HRQ L R I  ++RKR D+ + SY +AL  AGCE +IE T+R +RL +AG  +RM   RLP +          +A  TG+ G
Sbjct:   83 NRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFSAAMRMVAVTEFDKDPKVTADMIKIATRVECTGKRGRSAGKKAMMVTVAEALWDMLYADDAAIVSLTPESLEKMMSIIVRVAGLFGLMVSEPKTEIMCMLPKGLGERPFAVSAAGQTYKQTDRFVYLGRTICADGKVDREITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL-SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLG-----AMAGGTGYRG 569          
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 9.330e-40
Identity = 157/499 (31.46%), Postives = 200/499 (40.08%), Query Frame = 1
Query: 1009 NVEAVGPNGLPGELLKPGLRQDRSILLELHRLFALI*CEGKAPQQWKDAVIPALHKKGVKTECGNYRGISLVPHAE--------------------------------------------------------------TK------------VLNRTGVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDPR-QADGPEGTADVDGTG------------------------------------------------AG-YGLRLS-----------------------------------------CRVG------WTRAC--WTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIE-AQRKRPDQWMTSYNRALEVAGCE-SIETTLRTKRLLWAGAPIRMRGGRLPNKANYARKS*RCIAQRTGWEGERVDRL 1980
            N +AVGP+ LP EL+K  L  DR  L E H +   +   G  PQQWKDA I  L KKG   ECGNYRGISLV HA                                                               TK            VL R GV P+M+AV   FH+GMRA VR DDG  S+WF+V Q LR G  L+PLL N F AA+  V V  F KDP+  AD  +    V+ TG                                                AG +GL +S                                         C  G       +R C  W   +     + D+ +    LK R+++AE+ + LLYGC SW+L  EHY+KL   HRQ L R I  ++RKR D+ + SY +AL  AGCE +IE T+R +RL +AG  +RM   RLP +      +   +  R G E + V RL
Sbjct:  499 NRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLERFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFSAAMRMVAVTEFDKDPKVTADMIKIATRVECTGKRGRSAGKKAMMVTVAEALWDMLYADDAAIVSLTPESLEKMMSIIVRVAGLFGLMVSEPKTEIMCMLPKGLGERPFAVSAAGQTYKQTDRFVYLGRTICADGKVDREITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL-SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMA-GGVGYRGGQESDWVSRL 995          
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 2.330e-39
Identity = 155/493 (31.44%), Postives = 197/493 (39.96%), Query Frame = 1
Query: 1009 NVEAVGPNGLPGELLKPGLRQDRSILLELHRLFALI*CEGKAPQQWKDAVIPALHKKGVKTECGNYRGISLVPHAE--------------------------------------------------------------TK------------VLNRTGVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDPR-QADGPEGTADVDGTG------------------------------------------------AG-YGLRLS-----------------------------------------CRVG------WTRAC--WTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIE-AQRKRPDQWMTSYNRALEVAGCE-SIETTLRTKRLLWAGAPIRMRGGRLPNKANYARKS*RCIAQRTGWEG 1962
            N +AVGP+ LP EL+K  L  DR  L E H +   +   G  PQQWKDA I  L KKG   ECGNYRGISLV HA                                                               TK            VL R GV P+M+AV   FH+GMRA VR DDG  S+WF+V Q LR G  L+PLL N F AA+  V V  F KDP+  AD  +    V+ TG                                                AG +GL +S                                         C  G       +R C  W   +     + D+ +    LK R+++AE+ + LLYGC SW+L  EHY+KL   HRQ L R I  ++RKR D+ + SY +AL  AGCE +IE T+R +RL +AG  +RM   RLP +          +A  TG+ G
Sbjct:  361 NRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFSAAMRMVAVTEFDKDPKVTADMIKIATRVECTGKRGRSAGKKAMMVTVAEALWDMLYADDAAIVSLTPESLEKMMSIIVRVAGLFGLMVSEPKTEIMCMLPKGLGERPFAVSAAGQTYKQTDRFVYLGRTICADGKVDREITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL-SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLG-----AMAGGTGYRG 847          
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 3.270e-39
Identity = 155/493 (31.44%), Postives = 197/493 (39.96%), Query Frame = 1
Query: 1009 NVEAVGPNGLPGELLKPGLRQDRSILLELHRLFALI*CEGKAPQQWKDAVIPALHKKGVKTECGNYRGISLVPHAE--------------------------------------------------------------TK------------VLNRTGVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDPR-QADGPEGTADVDGTG------------------------------------------------AG-YGLRLS-----------------------------------------CRVG------WTRAC--WTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIE-AQRKRPDQWMTSYNRALEVAGCE-SIETTLRTKRLLWAGAPIRMRGGRLPNKANYARKS*RCIAQRTGWEG 1962
            N +AVGP+ LP EL+K  L  DR  L E H +   +   G  PQQWKDA I  L KKG   ECGNYRGISLV HA                                                               TK            VL R GV P+M+AV   FH+GMRA VR DDG  S+WF+V Q LR G  L+PLL N F AA+  V V  F KDP+  AD  +    V+ TG                                                AG +GL +S                                         C  G       +R C  W   +     + D+ +    LK R+++AE+ + LLYGC SW+L  EHY+KL   HRQ L R I  ++RKR D+ + SY +AL  AGCE +IE T+R +RL +AG  +RM   RLP +          +A  TG+ G
Sbjct:  611 NRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFSAAMRMVAVTEFDKDPKVTADMIKIATRVECTGKRGRSAGKKAMMVTVAEALWDMLYADDAAIVSLTPESLEKMMSIIVRVAGLFGLMVSEPKTEIMCMLPKGLGERPFAVSAAGQTYKQTDRFVYLGRTICADGKVDREITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL-SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLG-----AMAGGTGYRG 1097          
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5KDI8_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI8_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 3.580e-39
Identity = 155/493 (31.44%), Postives = 197/493 (39.96%), Query Frame = 1
Query: 1009 NVEAVGPNGLPGELLKPGLRQDRSILLELHRLFALI*CEGKAPQQWKDAVIPALHKKGVKTECGNYRGISLVPHAE--------------------------------------------------------------TK------------VLNRTGVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDPR-QADGPEGTADVDGTG------------------------------------------------AG-YGLRLS-----------------------------------------CRVG------WTRAC--WTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIE-AQRKRPDQWMTSYNRALEVAGCE-SIETTLRTKRLLWAGAPIRMRGGRLPNKANYARKS*RCIAQRTGWEG 1962
            N +AVGP+ LP EL+K  L  DR  L E H +   +   G  PQQWKDA I  L KKG   ECGNYRGISLV HA                                                               TK            VL R GV P+M+AV   FH+GMRA VR DDG  S+WF+V Q LR G  L+PLL N F AA+  V V  F KDP+  AD  +    V+ TG                                                AG +GL +S                                         C  G       +R C  W   +     + D+ +    LK R+++AE+ + LLYGC SW+L  EHY+KL   HRQ L R I  ++RKR D+ + SY +AL  AGCE +IE T+R +RL +AG  +RM   RLP +          +A  TG+ G
Sbjct:  732 NRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFSAAMRMVAVTEFDKDPKVTADMIKIATRVECTGKRGRSAGKKAMMVTVAEALWDMLYADDAAIVSLTPESLEKMMSIIVRVAGLFGLMVSEPKTEIMCMLPKGLGERPFAVSAAGQTYKQTDRFVYLGRTICADGKVDREITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL-SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLG-----AMAGGTGYRG 1218          
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5LM52_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LM52_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 5.340e-39
Identity = 154/493 (31.24%), Postives = 198/493 (40.16%), Query Frame = 1
Query: 1009 NVEAVGPNGLPGELLKPGLRQDRSILLELHRLFALI*CEGKAPQQWKDAVIPALHKKGVKTECGNYRGISLVPHAE--------------------------------------------------------------TK------------VLNRTGVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDPR-QADGPEGTADVDGTG------------------------------------------------AG-YGLRLS-----------------------------------------CRVG------WTRAC--WTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIE-AQRKRPDQWMTSYNRALEVAGCE-SIETTLRTKRLLWAGAPIRMRGGRLPNKANYARKS*RCIAQRTGWEG 1962
            N +AVGP+ LP EL+K  L  D+ +L E H +   +   G  PQQWKDA I  L KKG   ECGNYRGISLV HA                                                               TK            VL R GV P+M+AV   FH+GMRA VR DDG  S+WF+V Q LR G  L+PLL N F AA+  V V  F KDP+  AD  +    V+ TG                                                AG +GL +S                                         C  G       +R C  W   +     + D+ +    LK R+++AE+ + LLYGC SW+L  EHY+KL   HRQ L R I  ++RKR D+ + SY +AL  AGCE +IE T+R +RL +AG  +RM   RLP +          +A  TG+ G
Sbjct:  348 NRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFSAAMRMVAVTEFDKDPKVTADMIKIATRVECTGKRGRSAGKKAMMVTVAEALWDMLYADDAAIVSLTPESLEKMMSIIVRVAGLFGLMVSEPKTEIMCMLPKGLGERPFAVSAAGQTYKQTDRFVYLGRTICADGKVDREITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPL-SYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLG-----AMAGGTGYRG 834          
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5K556_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K556_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.060e-36
Identity = 113/344 (32.85%), Postives = 155/344 (45.06%), Query Frame = 1
Query: 1006 KNVEAVGPNGLPGELLKPGLRQDRS-ILLELHRLFALI*CEGKAPQQWKDAVIPALHKKGVKTECGNYRGISLVPHA--------------------------------------------------------------------------ETKVLNRTGVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDP--------RQADGPEGTAD---VDGTGAGYGLRLSCRVGW-TRACWTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIEAQRKRPDQ 1776
            KN +A G + LP ELLK  +  D   +L  LH +   +   G   ++WKDA +  L+KKG ++ C NYRGISL+ H                                                                           + KVL R G+  +++ V  QFHDG+RA VR DDG  SDWF V Q +R G VLSPLL N FFA VL V+V RFSKD            D    T +   + G    +G  L+  + + +R  W   + Y R L D+P+    LK R+++AE  EALLYGC +W+    HY  LR++H ++LLR+I     +P Q
Sbjct:  236 KNWKAPGHDSLPAELLK--IDDDEPFVLAHLHTILVKVWNGGDISREWKDATVKVLYKKGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMQWKVLARAGIPAKLIEVIRQFHDGLRARVRMDDGELSDWFFVTQGVRQGCVLSPLLSNIFFAEVLEVVVIRFSKDDVVLRSLVCLDEDTXAQTTEFRYIGGLVNEHG-DLTREINYRSRGAWACLRRYGRALFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSSLSGHYQTLRSIHHRLLLRVIGPHSAKPLQ 576          
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5K6B3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B3_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.040e-35
Identity = 125/358 (34.92%), Postives = 155/358 (43.30%), Query Frame = 1
Query: 1009 NVEAVGPNGLPGELLKPGLRQDRSILLELHRLFALI*CEGKAPQQWKDAVIPALHKKGVKTECGNYRGISLVPHAE--------------------------------------------------------------TK------------VLNRTGVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDPRQADGPEGTADVDGTGAGYGLRLSCRVGWTRACWTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIE-AQRKRPDQWMTSYNRALEVAGCE-SIETTLRTKRL 1854
            N + VGP+ LP EL+K  L  D+ +L E H     +   G  PQQWKDA I  L KKG   ECGNYRGISLV HA                                                               TK            VL R GV P+M+AV   FH+GMRA VR DDG  S+WF+V Q    G         T     L    R  S D        G AD + T        SCR  W   C+ R       + D+ +    LK R+++AE+ E LLYGC SW+L  EHY+KL   HRQ L R I  ++RKR D+ +  Y + L  AGCE +IE T+R +RL
Sbjct:    3 NRKTVGPDDLPAELIKLFLDGDQGLLREFHATVMDVRQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHASKVLLKVVATRLSPYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQ----GSAAGQTYKQTDRFVYLG---RTISAD--------GKADREITSR------SCRA-WK--CYRRNS---ASMYDRRRANRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLP-YAQTLMQAGCEETIEATVRKRRL 332          
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Match: A0A6H5JS19_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS19_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 7.300e-34
Identity = 99/292 (33.90%), Postives = 131/292 (44.86%), Query Frame = 1
Query: 1258 GVSPQMVAVTLQFHDGMRACVRPDDGICSDWFEVEQ*LR*GFVLSPLLLNTFFAAVLNVIVRRFSKDPRQADGPEGTADVDGTGAGYGLRLSCRVGW----------------------------------------------------------------------------TRACWTRTKWYLREL*DQPKVASSLKTRMVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIEAQRKRPDQWMTSYNRALEVAGCESIETTLRTKRLLWAGAPIRMRGGRLPNK 1905
            G+  +M AV  QFHDGMR  VR DDG  S WF V + LR G VLS LL N FFAAV++ +  RFS+D           +  G GA   L    R  W                                                                            +RA W   + Y ++L D+P     LKTR+++AE  EALLYGC +W  RQ+ Y  LRT+H ++LLR+I  QR++      SY + L+  GC+S+ETT+R +RLL+AGA  R   GRLP +
Sbjct:  114 GIPEEMNAVIRQFHDGMRVRVRVDDGEFSAWFWVTEGLRQGCVLSSLLFNIFFAAVIDAVAIRFSEDDVILQNLVYLEEETGAGARTPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTVIVEVFEKFGLTVSEKKTETLLIGAKNKQXXXXXXXXSPLIIEAAGQREINYQSRAAWACIRRYGQDLFDKPNAPFRLKTRLLQAEAMEALLYGCMTWAPRQDQYRTLRTIHHRLLLRVIGYQREKGTYRQLSYAQTLKRVGCQSVETTIRQRRLLFAGALARQPDGRLPKR 405          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig875.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LDM1_9PHAE7.890e-5034.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKB2_9PHAE5.550e-4031.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KC90_9PHAE9.330e-4031.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8Z5_9PHAE2.330e-3931.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE3.270e-3931.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDI8_9PHAE3.580e-3931.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LM52_9PHAE5.340e-3931.24Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K556_9PHAE1.060e-3632.85Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K6B3_9PHAE1.040e-3534.92Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JS19_9PHAE7.300e-3433.90Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig875contigA-nodosum_M_contig875:141240..144321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog6500.XP_005110414.1
PFAMsRVT_1
Model size2392
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons4
Evalue9.65e-07
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3E41I@33213|Bilateria
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size297
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig875.11.1prot_A-nodosum_M_contig875.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig875 143562..143858 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870274.9104712-UTR-A-nodosum_M_contig875:141239..1420051680870274.9104712-UTR-A-nodosum_M_contig875:141239..142005Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig875 141240..142005 +
1680870274.9294536-UTR-A-nodosum_M_contig875:142217..1426931680870274.9294536-UTR-A-nodosum_M_contig875:142217..142693Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig875 142218..142693 +
1680870274.942814-UTR-A-nodosum_M_contig875:142903..1432051680870274.942814-UTR-A-nodosum_M_contig875:142903..143205Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig875 142904..143205 +
1680870274.9554038-UTR-A-nodosum_M_contig875:143473..1435611680870274.9554038-UTR-A-nodosum_M_contig875:143473..143561Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig875 143474..143561 +
1680870274.9809897-UTR-A-nodosum_M_contig875:143858..1443211680870274.9809897-UTR-A-nodosum_M_contig875:143858..144321Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig875 143859..144321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870274.9684396-CDS-A-nodosum_M_contig875:143561..1438581680870274.9684396-CDS-A-nodosum_M_contig875:143561..143858Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig875 143562..143858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig875.11.1

>prot_A-nodosum_M_contig875.11.1 ID=prot_A-nodosum_M_contig875.11.1|Name=mRNA_A-nodosum_M_contig875.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=99bp
MVKAEIFEALLYGCNSWTLRQEHYSKLRTVHRQVLLRIIEAQRKRPDQWM
TSYNRALEVAGCESIETTLRTKRLLWAGAPIRMRGGRLPNKANYARKS*
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mRNA from alignment at A-nodosum_M_contig875:141240..144321+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig875.11.1 ID=mRNA_A-nodosum_M_contig875.11.1|Name=mRNA_A-nodosum_M_contig875.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3082bp|location=Sequence derived from alignment at A-nodosum_M_contig875:141240..144321+ (Ascophyllum nodosum dioecious)
TCCCCGATATTATACTGTTGACCCTATGTGACTCCATTGGGGAACCCTTT TAATACCATGTAGAGTTTTTGTCCCTACAGCCAATGTTCCCACCTAAACC TTTTGACTGATTGGAAGGTTTAGATGCGTTCAGATTTTTCTTTAAATACT CCCCTTTGATCTAGCTCAACTGTGTTCAGGGTCTGGTATAAGTACGAACG TATAAGTACATTATAACAGTATGGTATGAACTTGTAAGAGTATGGTATAG TGTACGTATTTGGTTTGGTACGGTTTGTGTATACTGAAGGTACGCAATGC TGTAACAACAATATATCGGTTCTACACGCCATCTCTGGTATGACATCATC TCAAGCAATCTCCTCCTGAAACGACCTCACCCGCAGCATCGCTATCCCGT GTAACTCCTGTCAACGCTGCAGACCCTCGTGGATATCCGATCACAGACAA ACACGATCCGTGTCAGCTGCAATACATTTCTCGAGAGCGGGCTTTACGGG ATGGAGTTTGGCAAAGCATGGTTATCCATGACGACATCATGTAGTCTGGC CGAAGGAACACACGACGGGTGGTACGCTTGACCTTAGGAGCATCGTCCTC GTCTAATCCCTCAAACCAGCTGTCGGTCTCATCGTCGAGCATCCCGAGGA TCAAGGACCACGCCGCCGGTGTCCTCCTTTTCTGCTTGCGCCCTCCAAAA GCCACCACAGCGGCAGCTACCGTTGAGAGGAATTGCTCATCGATGCCTCC GGAAGCCAACGTTCAGGTGTATGAGCGTTAATGGGGCCTGGCATAGTCGA GTGTGAGTGAGGGGGCTAGGGTTCCACATATAATAGCTCGCAGAAAAAAA GGAGGAGGCCCGCCTCGATGTCTTTTGACGCACAAAAATCCACGAGTGTT TTCGTTGAACGACATATCGGGGATTTTCTCTCGATTTACTATGAATTCGC ATTCTTCCGAAACATCAAATCGGTGCAGTTGGAGGACACAAGGAATATCA AATCGCATTACGTCCGTGATGAGGGAGGAAGACTGCTGCTGCAGGACAAA GGACGTATCCGCGGGAGATGAGTGCGGTTCTTTTGCTCGCTGTTGGACGC GAAATCCGACATGCTAGATACCGACATCCCATAAAGGCTGCCGCAGCAAC CCGTCGCGAGTGCCCTCGGGATCGAGCTCACGGAGGAGGAGATTGCTACA GCGACGGAGGCAATGGCAAAAACGTGGAAGCAGTGGGGCCGAATGGCCTT CCCGGGGAACTACTGAAACCCGGACTTCGACAAGATCGAAGCATCCTGCT GGAGCTCCATCGACTTTTTGCCCTCATCTAGTGCGAGGGAAAAGCTCCAC AGCAATGGAAGGACGCGGTCATTCCCGCGCTTCACAAGAAAGGCGTCAAG ACGGAGTGCGGAAACTACCGTGGTATCTCGCTCGTGCCACACGCGGAAAC AAAGGTTGTCAGGAGACCTAGCGATTACAGTGAGACAAAGGGGCTGTTAC CGGAAAAGCAGTGTTGCTTTCGACCGGATCGCTTGACCACGGACATGACG TTTGTGGTGTGCAGGCTTCAGGGTATTAGGCGGAAGGCAGGAGTGCCTCT CTTCCTGTACTTCATTGATCTCCAGAAGACGTACAACACCGTTGACTGCA TCCTCCTGTGGCAGGTACTCAATCGCACCGGAGTATCACCGCAGATGGTA GCAGTCACCCTACAATTCCATGATGGGATGAGGGCCTGTGTGCGACCTGA TGACGGCATCTGTTCGGACTGGTTCGAGGTGGAGCAATGACTACGGTAAG GATTCGTGCTATCTCCGCTGTTATTGAATACATTCTTTGCAGCCGTGCTA AACGTTATCGTTCGAAGATTCAGCAAGGATCCTCGCCAAGCTGATGGGCC TGAAGGAACCGCCGACGTCGATGGGACCGGAGCCGGCTACGGACTACGTT TGTCGTGCCGTGTGGGGTATGTTGCACGTGGATGACGCATGAATAGTTTC GCGATCGCCACAGGGTCTTGCTAAAATTATGGAAATCATCGTAGAGGTTT GCCGAGCCTTCGCTCTAACCGTGTCGGCGAAAAGAACAGAGACCATGTGC ATGCCTCCACCGCGTGAACCGCGGACGATGGTGCGAGTCGAACTGACCAG GCAAATCTACAAACAGGTGCAATCCTTGACATGCCTGGGGGACGCCTTGA CCGAAACTCCGGACATGTCCGTCGAAATCGCTAGGTGGACCCGCGCATGT TGGACGCGCACCAAGTGGTACCTACGCGAGCTCTAAGACCAGCCAAAAGT GGCGTCCTCACTCAAGACCCGAATGGTAAAGGCCGAGATATTTGAAGCCC TACTGTATGGATGCAACTCGTGGACCCTTCGTCAGGAACACTACTCGAAA CTCCGCACCGTACACCGCCAGGTCTTGCTTCGCATCATCGAGGCACAGCG TAAGAGACCAGACCAATGGATGACCTCGTACAACCGTGCCCTTGAGGTAG CCGGGTGTGAGAGCATTGAGACGACGTTACGCACGAAAAGACTTTTGTGG GCGGGGGCGCCCATCCGAATGCGGGGTGGGCGGTTGCCAAACAAAGCGAA CTATGCTAGGAAATCTTGAAGGTGCATTGCGCAGAGGACAGGATGGGAAG GAGAAAGAGTGGACCGACTGAGTATAAAGCGAGATCCGGGCGTTTGGCAT AGCGGGAAATTGGGAAGCGACGGCGTTGGAGGCAAAGGTGTGGGTTGAGA CAGTCACGGAAGGTGGGGGGAAGTTTATGGTCGCGTGGAGGAAAAAAAGG TAGACGCGGCTAGACTTCACGAAGAGAAGAAAGAGGCAACAAGACTGGGA AAGTTGTGATCGTACACGGAAGCGAAGAACCTGCGAAGCGACACCATTTC GCTTAGTTGACGAGTCAAAAGAATCCTGTACGGACGCGAAACAGACAAAA CCCTGTGTAGCACCTAGGCATGCATGTAGATGCGCCGCGTGATGCCCTTT CTGGCCATCTGCTCTTTTGTTCTCTTCGTACACGCCATGTGTTTTTATTT TATTTATTTATTTTTTATTTCCTCCTTACGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig875:141240..144321+

>mRNA_A-nodosum_M_contig875.11.1 ID=mRNA_A-nodosum_M_contig875.11.1|Name=mRNA_A-nodosum_M_contig875.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=297bp|location=Sequence derived from alignment at A-nodosum_M_contig875:141240..144321+ (Ascophyllum nodosum dioecious)
ATGGTAAAGGCCGAGATATTTGAAGCCCTACTGTATGGATGCAACTCGTG
GACCCTTCGTCAGGAACACTACTCGAAACTCCGCACCGTACACCGCCAGG
TCTTGCTTCGCATCATCGAGGCACAGCGTAAGAGACCAGACCAATGGATG
ACCTCGTACAACCGTGCCCTTGAGGTAGCCGGGTGTGAGAGCATTGAGAC
GACGTTACGCACGAAAAGACTTTTGTGGGCGGGGGCGCCCATCCGAATGC
GGGGTGGGCGGTTGCCAAACAAAGCGAACTATGCTAGGAAATCTTGA
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