mRNA_A-nodosum_M_contig874.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig874.6.1
Unique NamemRNA_A-nodosum_M_contig874.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig874.6.1 vs. uniprot
Match: D8LGX6_ECTSI (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGX6_ECTSI)

HSP 1 Score: 424 bits (1091), Expect = 1.100e-137
Identity = 255/532 (47.93%), Postives = 309/532 (58.08%), Query Frame = 1
Query:  298 AAETTYVNDRRIVHISTRYAQ---LRSEQQQRSGSSELPPTISDIIARQAAVSVRRAAELVRFGAVYIGEETVNGGGKTRTPGKGKTKRHPGGEGEEPVSVVKGTAISEAQRRKINSKSAGEPPFVGTSFAHMRLRRLDGSEALSPPPPNAYLRVHCDPRTFPAARATDWRERLVAVTEDYLVVDKPPGVPSVPTIDNAVENALHQAGLALASASIFDRSNSGGVGGTDNDSPLPPPSLHAVSRLDVCTSGLIIFARNAPSAATLNRLFRERGISKRYLALLAPGPAVRLGLTTHCCRSRAFDGRSRPRLYANYDTELLEGGKWGGAWIEARSTILLCAPVTGRAVVEAVEGDRAEAEAATEISGARVVAASLEAELAVG-------------LEAARARSGDGAAAGGVPAPYGRNALGMTDSGVALDAEGAMMTAAREQQRYHPPHLCVMELGTGRTHQLRLQLAAMGAAIIGDTRYRGVVGRVHRGVPADDRMDIFGPEPDSIALQAARLEFEWEGERIVYSAKRPPWA 1845
            +AETTY  + R+VHI+T  A    L  E+Q      E   TI+++++   AVS  R  ELV+FG+VYIGE                  RHP        S  K   I+ A+++ +  KSA + PF GTSF HMRLRRL   E+ + PP  AYLRVHCDPRTFPA++  DW +R+V   ED++VVDKP GVP+VPTIDN V+N + QA LA+A      RS             LPPP LHAVSRLDVCTSG+++FAR+  +A  LN LFR R + KRYLALL PGPAV  G   HCCRS+AFDG  RPR+YA++D ELL G KWGGAW EARST+LLCAP TG A                                                +EAA AR G+G                  D   A DAE      A  ++  H PHLC MEL TGRTHQLRLQLAAMG+AI+GDTRYRGVVGRVHRG+  DD    FG EP++IALQAAR+EFEW+G  +V+S  RP WA
Sbjct:   27 SAETTYQGEHRVVHIATPGAPPPWLEDEEQ----GEEQRATIAELVSHFGAVSRERGVELVKFGSVYIGEVVDT------------NWRHP-------PSKEKQMTIAAARKKAL--KSADQAPFRGTSFEHMRLRRLHPWESGNFPPHGAYLRVHCDPRTFPASQVMDWSKRIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCVFQASLAVAGMPPGSRS-------------LPPP-LHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARRVKKRYLALLTPGPAVPTGSMAHCCRSKAFDGSRRPRIYADFDEELLAGDKWGGAWQEARSTVLLCAPATGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEEIEAA-ARGGEGREE--------------EDGSTAPDAEATTAAEAAREEGDHAPHLCAMELETGRTHQLRLQLAAMGSAIVGDTRYRGVVGRVHRGLRVDDDTSRFGQEPEAIALQAARIEFEWQGRTVVFSTDRPSWA 504          
BLAST of mRNA_A-nodosum_M_contig874.6.1 vs. uniprot
Match: A0A835YKX4_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKX4_9STRA)

HSP 1 Score: 203 bits (516), Expect = 1.130e-54
Identity = 140/387 (36.18%), Postives = 182/387 (47.03%), Query Frame = 1
Query:  697 RLDG-SEALSPPPPNA---YLRVHCDPRTFPAARATDWRERLVAVTEDYLVVDKPPGVPSVPTIDNAVENALHQAGLALASASIFDRSNSGGVGGTDNDSPLPPPSLHAVSRLDVCTSGLIIFARNAPSAATLNRLFRERGISKRYLALLAPGPAVRLGLTTHCCRSRAFDGRSRPRLYANYDTELLEGGKWGGAWIEARSTILLCAPVTGRAVVEAVEGDRAEAEAATEISGARVVAASLEAELAVGLEAARARSGDGAAAGGVPAPYGRNALGMTDSGVALDAEGAMMTAAREQQRYHPPHLCVMELGTGRTHQLRLQLAAMGAAIIGDTRYRGVVGRVHRGVPADDRMDIFGPEPDSIALQAARLEFEWEGERIVYSAKRPPWA 1845
            ++DG S   SP  P A   YLR+H  PR F  A A DWR R++    DY+V+DKP GVPSVPT DNA ++AL +A  AL                   D+  P   LHAVSRLDVCTSG+++FAR+  +AA L+     R + K Y  ++  G  V LG+  HCC +RA  G ++PR+YA +D     G   G  W  A               +E +  DR         SGA  ++                                                                      L TGRTHQ+RLQLAA+GA I+GD+RY  ++G+VH G  A DR D FGPEP+ I L AA LEF+W GER+ Y+A+ PPWA
Sbjct:  133 QVDGLSRLASPDAPIARGTYLRLHAAPRRFARAAAADWRARVLHACADYVVIDKPAGVPSVPTTDNAADSALWRARAALG-----------------GDAARP---LHAVSRLDVCTSGVLVFARSPAAAAALSGAISARAVRKVY-RVVTTGAEVPLGVLRHCCSTRARTGDAQPRIYAPFDAAKACGD--GSGWRLAE--------------LEVLSHDRG--------SGASTIS----------------------------------------------------------------------LMTGRTHQIRLQLAALGAGIVGDSRYADIIGKVHDGTAASDRTDWFGPEPEEIRLHAAALEFDWGGERVCYTAE-PPWA 403          
BLAST of mRNA_A-nodosum_M_contig874.6.1 vs. uniprot
Match: A0A5J4Z0G8_PORPP (RNA pseudouridine synthase 6, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0G8_PORPP)

HSP 1 Score: 166 bits (420), Expect = 4.980e-41
Identity = 146/485 (30.10%), Postives = 206/485 (42.47%), Query Frame = 1
Query:  409 TISDIIARQAAVSVRRAAELVRFGAVYIGEETVNGG--GKTRTPGKGKTKRHPGGEGEEPVSVVKGTAISEAQRRKINSKSAGEPPFVGTSFAHMRLRRLDGSEALSPPPPNAYLRVHCDPRTFPAARATDWRERLVAVTE-DYLVVDKPPGVPSVPTIDNAVENALHQAGLALASASIFDRSNSGGVGGTDNDSPLPPPSLHAVSRLDVCTSGLIIFARNAPSAATLNRLFRERGISKRYLALLAPGPAVRL-----GLTTHCCRSRAFDGRSRPRLYANYDTEL---------------LEGGKWGGAWIEARSTILLCAPVTGRAVVEAVEGDRAEAEAATEISGARVVAASLEAELAVGLEAARARSGDGAAAGGVPAPYGRNALGMTDSGVALDAEGAMMTAAREQQRYHPPHLCVMELGTGRTHQLRLQLAAMGAAIIGDTRYRGVVGRVHRGVPADDRMDIFGPEPDSIALQAARLEF 1794
            ++  ++AR+  ++     +L+R GAVY+    ++GG  G +R+P      R       + +     +++ +AQ +K                                     Y R+H +P  +P A A  W++R+V   + D++ VDKPP +PSVPT+ N VE A  Q   AL                   + P P   LHAVSRLDVCTSG+++FAR+  +AA LN   R R + KRY  LL PGP  R      G   H  R+   D   +PR+Y   D E                LE  K GGAW  A   IL     T R      E +RAE    +E+                                                 V + A+ A +     +          +EL TGRTHQLRLQ A++G  + GD+RYR V GRVHRGVP DD +D+FGPEP+ ++L A+   F
Sbjct:   72 SVQHVLARETKLAPELVEDLIRIGAVYMAS-VISGGKRGSSRSPSTPNLSR------VQRILPADVSSMLDAQSKK-----------------------------------GMYFRLHANPARYPDAHAYVWKDRIVYNGDNDFVAVDKPPNLPSVPTLVNVVECARTQVECAL-------------------ECPAP---LHAVSRLDVCTSGVLVFARHKRAAAHLNEQIRNRSVKKRY-TLLVPGPIPREIIQKDGRVLHAARTNLPDNIPKPRIYRLLDLEKDLDAALLQDESYSTPLEAPKIGGAWHVAAMRIL-----TER------EMNRAEL---SEV-------------------------------------------------VTMQADHAGIDVRYTEYE--------VELLTGRTHQLRLQFASLGLPLFGDSRYRPVSGRVHRGVPEDDNLDMFGPEPNRVSLCASVFHF 420          
BLAST of mRNA_A-nodosum_M_contig874.6.1 vs. uniprot
Match: A0A7S0H4S4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0H4S4_9CRYP)

HSP 1 Score: 96.7 bits (239), Expect = 1.610e-18
Identity = 64/193 (33.16%), Postives = 88/193 (45.60%), Query Frame = 1
Query:  733 PNAYLRVHCDPRTFPAARATDWRERLVAVTEDYLVVDKPPGVPSVPTIDNAVENALHQAGLALASASIFDRSNSGGVGGTDNDSPLPPPSLHAVSRLDVCTSGLIIFARNAPSAATLNRLFRERGISKRYLALLAPGPAVRLGLTTHC-CRSRAFDGRSRPRLYANYDTELLEGGKWGGAWIEARSTILLCAP 1308
            P +Y+RVH  P+ F      DW  R++  +ED++V++KPPGVPS+ TIDNA+E  + Q                           +   SL   SRLDVCT+G++IFA+      + N+   ER   K Y  LL+ G  V+ G   H  CR R     SRP L   +             W +A   IL C P
Sbjct:   89 PGSYVRVHAQPKRFLTVYKMDWNARVICESEDFIVINKPPGVPSLTTIDNAIECVMSQV------------------------EKIKNISLMPTSRLDVCTAGVLIFAKTREFCMSTNKAMSERRSEKIY-KLLSEGE-VQTGTVRHLFCRKRKGHKNSRPTLLRAWQDLTSRKDLQEEGWQDAVLEILDCRP 255          
BLAST of mRNA_A-nodosum_M_contig874.6.1 vs. uniprot
Match: L1JPX0_GUITC (PseudoU_synth_2 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JPX0_GUITC)

HSP 1 Score: 97.1 bits (240), Expect = 2.090e-18
Identity = 97/353 (27.48%), Postives = 131/353 (37.11%), Query Frame = 1
Query:  733 PNAYLRVHCDPRTFPAARATDWRERLVAVTEDYLVVDKPPGVPSVPTIDNAVENALHQAGLALASASIFDRSNSGGVGGTDNDSPLPPPSLHAVSRLDVCTSGLIIFARNAPSAATLNRLFRERGISKRYLALLAPGPAVRLGLTTHCCRSRAFDGRSRPRLYANYDTELLEGGKWGGAWIEARSTILLCAPVTGRAVVEAVEGDRAEAEAATEISGARVVAASLEAELAVGLEAARARSGDGAAAGGVPAPYGRNALGMTDSGVALDAEGAMMTAAREQQRYHPPHLCVMELGTGRTHQLRLQLAAMGAAIIGDTRYRGVVGRVHRGVP--ADDRMDIFGPEPDSIALQAAR 1785
            P +Y+RVH  P+   +    DW  R++  ++D++V+DKPPGVPS+ TIDN VE  + Q                           +   SL   SRLDVCT+G++IFA+        N+   ER   K YL L            +     R  D RSR         +L E G     W +A   IL C                            R +   L+                         P+             L  +G          R          L TGRTHQ+RLQ AA+GA ++GDTRY    G + + V     D   +FGP+PD I LQA R
Sbjct:   60 PGSYVRVHAQPKRCLSVYKIDWSARVIRESQDFIVIDKPPGVPSLTTIDNGVECVMSQV------------------------EKMRNISLMPTSRLDVCTAGVLIFAKTRDFCLKTNKAMSERRCDKVYLLL------------SERELPRGEDLRSRQ--------DLQEEG-----WQDAVLEILDC----------------------------RCLLTFLQ-------------------------PFD------------LKQQGGRRKVFEYSVR----------LITGRTHQIRLQFAALGAPVLGDTRYTPAAGLLFQSVDDAIGDGSRVFGPDPDVIFLQARR 288          
BLAST of mRNA_A-nodosum_M_contig874.6.1 vs. uniprot
Match: A0A812V5M1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812V5M1_9DINO)

HSP 1 Score: 100 bits (248), Expect = 7.900e-18
Identity = 100/360 (27.78%), Postives = 136/360 (37.78%), Query Frame = 1
Query:  745 LRVHCDPRTFP--AARATDWRERLVAVTEDYLVVDKPPGVPSVPTIDNAVENALHQAGLALASASIFDRSNSGGVGGTDNDSPLPPPSLHAVSRLDVCTSGLIIFARNAPSAATLNRLFRERGISKRYLALLAPGPAVRL-GLTTHCCRSRAFDGRSRPRLYANYDTELLEGGKWGGAWIEARSTILLCAPVTGRAVVEAVEGDRAEAEAATEISGARVVAASLEAELAVGLEAARARSGDGAAAGGVPAPYGRNALGMTDSGVALDAEGAMMTAAREQQRYHPPHLCVMELGTGRTHQLRLQLAAMGAAIIGDTRYRGVVGRVHRGVPADDRM------DIFGPEPDSIALQAARLEFE 1797
            LRVH +P+ +   +A   DW +RL+ V+ +Y+VVDKP GVP  P + N  E  +     AL+ AS   R  S G  G D         L A  RLDV TSGL + AR+  +AA   +L  +  ++KRYLA++  G   +  GL  H      F GR  PRL A     + +       W  AR+TIL    V                                                                          D    M+                ++L TGRTHQ+R QLA+MGA ++ D  Y  +   + RG P DD +           E   I LQ  +L FE
Sbjct:  110 LRVHTEPKRYRRCSAEGRDWADRLLYVSPEYVVVDKPAGVPCAPHVSNGREWLVPLVAAALSIASRESRGKSSG--GED---------LVACQRLDVATSGLTLLARSREAAARFRKLLCDGQVTKRYLAVVKTGVKAKTDGLLEHWLSDAVF-GRPAPRLVAPLSAPVQDSRH---KWRNARTTILSTTSVE-------------------------------------------------------------------------DGSQEML----------------LDLDTGRTHQIRAQLASMGAPVVNDGLYSHMANFLWRG-PCDDEVAENLVQSATSSEDGDIGLQCTQLSFE 364          
BLAST of mRNA_A-nodosum_M_contig874.6.1 vs. uniprot
Match: A0A812T6T9_9DINO (Hypothetical protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812T6T9_9DINO)

HSP 1 Score: 97.4 bits (241), Expect = 1.680e-17
Identity = 99/360 (27.50%), Postives = 135/360 (37.50%), Query Frame = 1
Query:  745 LRVHCDPRTFP--AARATDWRERLVAVTEDYLVVDKPPGVPSVPTIDNAVENALHQAGLALASASIFDRSNSGGVGGTDNDSPLPPPSLHAVSRLDVCTSGLIIFARNAPSAATLNRLFRERGISKRYLALLAPGPAVRL-GLTTHCCRSRAFDGRSRPRLYANYDTELLEGGKWGGAWIEARSTILLCAPVTGRAVVEAVEGDRAEAEAATEISGARVVAASLEAELAVGLEAARARSGDGAAAGGVPAPYGRNALGMTDSGVALDAEGAMMTAAREQQRYHPPHLCVMELGTGRTHQLRLQLAAMGAAIIGDTRYRGVVGRVHRGVPADDRM------DIFGPEPDSIALQAARLEFE 1797
            LRVH +P+ +   +A   DW +RL+ V+ +Y+VVDKP GVP  P + N  E  +     AL+ AS   R  S G  G D         L A  RLDV TSGL + AR+  +A    +L  +  ++KRYLA++  G   +  GL  H      F GR  PRL A     + +       W  AR+TIL    V                                                                          D    M+                ++L TGRTHQ+R QLA+MGA ++ D  Y  +   + RG P DD +           E   I LQ  +L FE
Sbjct:  121 LRVHTEPKRYRRCSAEGRDWADRLLYVSPEYVVVDKPAGVPCAPHVSNGREWLVPLVAAALSIASRESRGKSSG--GED---------LVACQRLDVATSGLTLLARSREAAERFRKLLCDGQVTKRYLAVVKTGVKAKTDGLLEHWLSDAVF-GRPAPRLVAPLSAPVQDSRH---KWRNARTTILSTTSVE-------------------------------------------------------------------------DGSQEML----------------LDLDTGRTHQIRAQLASMGAPVVNDGLYSHMANFLWRG-PCDDEVAENLVQSATSSEDVDIGLQCTQLSFE 375          
BLAST of mRNA_A-nodosum_M_contig874.6.1 vs. uniprot
Match: C1DZS3_MICCC (PseudoU_synth_2 domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZS3_MICCC)

HSP 1 Score: 96.3 bits (238), Expect = 3.200e-17
Identity = 108/404 (26.73%), Postives = 150/404 (37.13%), Query Frame = 1
Query:  730 PPNAYLRVHCDPRTFPAARATDWRERLVAVTEDYLVVDKPPGVPSVPTIDNAVENALHQAGLALASASIFDRSNSGGV-----------------------GGTDNDSPLPPPSLHAVSRLDVCTSGLIIFARNAPSAATLNRLFRERGISKRYLALLAPGPAVRLGLTTHCCRSRAFDGRSRPRLYANYDTELLEGGKWGGAWIEARSTILLCAPVTGRAVVEAVEGDRAEAEAATEISGARVVAASLEAELAVGLEAARARSGDGAAAGGVPAPYGRN-----ALGMTDS-GVALDAEGAMMTAAREQQRYHPPHLCVMELGTGRTHQLRLQLAAMGAAIIGDTRYRGV-VGRVHRGVPADDRMDIFGPEPDSIALQAARLEFEWE---GERIVYSAKRPPW 1842
            P  AY+RVH  P+ FPAA A DW  R++A   D++ VDKPPGVP+ P++DNA E A ++   AL      D                              GG          +L    RLDV TSG+++ AR +  AA  N   R R ++K Y  + A   AV +G+  H                    TE   G + G A  E R       P   R    A +G  ++    T                                      P GR       LG  ++ G+       +   A         ++  +EL TGRTHQ+R QL+A+G  I+GD  Y GV + R     P   R D      D + L AA +  + +   G +       PPW
Sbjct:  131 PNGAYVRVHVHPKRFPAAVACDWGGRIIARGRDWVAVDKPPGVPAGPSLDNATECATYRVARALRRLETTDXXXXXXXXXXXXXXXXXXXXXXXXXXXSWWGGDGXXXXXXGTTLTTTHRLDVATSGVLVLARRSSFAAEFNDALRRRRVTKTYECVTAR--AVPVGVLEHW-------------------TEESSGAREGPARFEMREL----EPGDPRWRDVAADGKYSDDAFVT--------------------------------------PDGRKLCVLRVLGCEETEGLTKRLTKRLAGEAXXXXXXSRAYVSTIELVTGRTHQIRAQLSAIGCPILGDVLYGGVDLSREGGATPRVLRDD------DRLCLHAAEMRMDADSALGPKGTTLRAGPPW 465          
BLAST of mRNA_A-nodosum_M_contig874.6.1 vs. uniprot
Match: K7PEZ7_9BACT (Pseudouridine synthase n=1 Tax=uncultured bacterium TaxID=77133 RepID=K7PEZ7_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 8.660e-16
Identity = 56/164 (34.15%), Postives = 75/164 (45.73%), Query Frame = 1
Query:  661 FVGTSFAHMRLRRLDGSEALSPPPPNAYLRVHCDPRTFPAARATDWRERLVAVTEDYLVVDKPPGVPSVPTIDNAVENALHQAGLALASASIFDRSNSGGVGGTDNDSPLPPPSLHAVSRLDVCTSGLIIFARNAPSAATLNRLFRERGISKRYLALLAPGPAV 1152
             V     +   +R+D   ALSP     Y+RVH +P+ FP     DW   +V   + ++VV+KP G+P   T+DN VEN LHQ  +AL  A                        L+   RLD   SGLI+ AR        NRL  +R + KRY AL+   P V
Sbjct:   40 LVSFGSVYQDRQRVDSDRALSP---GQYIRVHLNPKRFPV-EGIDWATTIVHRDKAFVVVNKPAGIPVHATLDNQVENLLHQLRVALGGA------------------------LYVTQRLDTDVSGLIVVARTQEFQRQFNRLLADRKLKKRYRALVTTAPEV 175          
BLAST of mRNA_A-nodosum_M_contig874.6.1 vs. uniprot
Match: A0A3M7KTQ2_AUXPR (PseudoU_synth_2 domain-containing protein (Fragment) n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KTQ2_AUXPR)

HSP 1 Score: 89.7 bits (221), Expect = 1.820e-15
Identity = 100/385 (25.97%), Postives = 140/385 (36.36%), Query Frame = 1
Query:  730 PPNAYLRVHCDPRTFPAARATDWRERLVAVTEDYLVVDKPPGVPSVPTIDNAVENALHQAGLALASASIFDRSNSGGVGGTDNDSPLPPPSLHAVSRLDVCTSGLIIFARNAPSAATLNRLFRERGISKRYLALLAPGPAVRLGLTTHCCRSRAFDGRSRPRLYANYDTELLEGGKWGGAWIEARSTILLCAPVTGRAVVEAVEGDRAEAEAATEISGARVVAASLEAELAVGLEAARARSGDGAAAGGVPAPYGRNALGMTDSGVALDAEGAMMTAAREQQRYHPPHLCVMELGTGRTHQLRLQLAAMGAAIIGDTRYRGVVGRVHRGVPADDRM-DIFGPEPDSIALQAARLEFEWE-GERIVYSAKRP-PWASENSAQYLEH 1875
            P  AYLRVH   + FPAA   DW  RL+AVT+++++V+KP GVP   T+DNA E+ + QA   L                            H + RLD CT G+++  R   +    +       + K Y  L        LGL TH                      L  G +  G             P+   A  E   G  A                                                          +L  E A    A E     P   CV+ L TGRTHQ+R Q+AA+G  ++GDT Y G + R     P +  M D+  PE  +I LQAAR+    E G  +++  + P PW ++ S+   +H
Sbjct:  104 PAGAYLRVHAHVKRFPAADCADWAARLLAVTDEHVIVNKPCGVPVPITVDNARESVVTQASQPL----------------------------HIIHRLDRCTEGVVVLGRGVQAVRAFHDAQHSGRVQKTYRLLCHGSQPPPLGLLTH---------------------HLAVGTRIPGC------------PIHSVAHDEPRPGTAA---------------------------------------------------------CSLMIESAESAPALESVHGGPVIDCVVRLVTGRTHQIRAQMAAVGHPLVGDTLY-GPLARRPGQAPVEVAMGDLQEPEL-AIGLQAARMVVMAEDGATVLHDWRAPEPWWTQASSCGPQH 368          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig874.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGX6_ECTSI1.100e-13747.93PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A835YKX4_9STRA1.130e-5436.18Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A5J4Z0G8_PORPP4.980e-4130.10RNA pseudouridine synthase 6, chloroplastic n=1 Ta... [more]
A0A7S0H4S4_9CRYP1.610e-1833.16Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
L1JPX0_GUITC2.090e-1827.48PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A812V5M1_9DINO7.900e-1827.78Hypothetical protein n=1 Tax=Symbiodinium necroapp... [more]
A0A812T6T9_9DINO1.680e-1727.50Hypothetical protein n=2 Tax=Symbiodinium TaxID=29... [more]
C1DZS3_MICCC3.200e-1726.73PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
K7PEZ7_9BACT8.660e-1634.15Pseudouridine synthase n=1 Tax=uncultured bacteriu... [more]
A0A3M7KTQ2_AUXPR1.820e-1525.97PseudoU_synth_2 domain-containing protein (Fragmen... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig874contigA-nodosum_M_contig874:35524..37783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LGX6
PFAMsPseudoU_synth_2
Model size2260
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006139,GO:0006206,GO:0006213,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009119,GO:0009451,GO:0009982,GO:0009987,GO:0016070,GO:0016853,GO:0016866,GO:0018130,GO:0019438,GO:0019858,GO:0034641,GO:0034654,GO:0043094,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046087,GO:0046131,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090304,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657
Exons1
Evalue3.43e-140
EggNOG OGsCOG0564@1|root,KOG1919@2759|Eukaryota
Ec32 ortholog descriptionPseudouridine synthase, catalytic domain
Ec32 orthologEc-14_001540.1
Descriptionpseudouridine synthase activity
Cds size1869
COG categoryJ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870271.8861997-UTR-A-nodosum_M_contig874:35523..358901680870271.8861997-UTR-A-nodosum_M_contig874:35523..35890Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig874 35524..35890 -
1680870271.91305-UTR-A-nodosum_M_contig874:37759..377831680870271.91305-UTR-A-nodosum_M_contig874:37759..37783Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig874 37760..37783 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870271.9004586-CDS-A-nodosum_M_contig874:35890..377591680870271.9004586-CDS-A-nodosum_M_contig874:35890..37759Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig874 35891..37759 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig874.6.1prot_A-nodosum_M_contig874.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig874 35891..37759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig874.6.1

>prot_A-nodosum_M_contig874.6.1 ID=prot_A-nodosum_M_contig874.6.1|Name=mRNA_A-nodosum_M_contig874.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=623bp
MVLFKLGAPSTCLGLRYLAHDLKMQGAGVGVGVGWSSGRTAAAASTSGTS
VLPILPLGASNTAIRGHPYTTTCPSPTTSLQMATSRPGSTVAAETTYVND
RRIVHISTRYAQLRSEQQQRSGSSELPPTISDIIARQAAVSVRRAAELVR
FGAVYIGEETVNGGGKTRTPGKGKTKRHPGGEGEEPVSVVKGTAISEAQR
RKINSKSAGEPPFVGTSFAHMRLRRLDGSEALSPPPPNAYLRVHCDPRTF
PAARATDWRERLVAVTEDYLVVDKPPGVPSVPTIDNAVENALHQAGLALA
SASIFDRSNSGGVGGTDNDSPLPPPSLHAVSRLDVCTSGLIIFARNAPSA
ATLNRLFRERGISKRYLALLAPGPAVRLGLTTHCCRSRAFDGRSRPRLYA
NYDTELLEGGKWGGAWIEARSTILLCAPVTGRAVVEAVEGDRAEAEAATE
ISGARVVAASLEAELAVGLEAARARSGDGAAAGGVPAPYGRNALGMTDSG
VALDAEGAMMTAAREQQRYHPPHLCVMELGTGRTHQLRLQLAAMGAAIIG
DTRYRGVVGRVHRGVPADDRMDIFGPEPDSIALQAARLEFEWEGERIVYS
AKRPPWASENSAQYLEHSENYN*
back to top

mRNA from alignment at A-nodosum_M_contig874:35524..37783-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig874.6.1 ID=mRNA_A-nodosum_M_contig874.6.1|Name=mRNA_A-nodosum_M_contig874.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2260bp|location=Sequence derived from alignment at A-nodosum_M_contig874:35524..37783- (Ascophyllum nodosum dioecious)
AGACCTCGTTGTAGTATTCATGTAATGGTGCTCTTCAAACTCGGCGCGCC GTCGACCTGTCTTGGATTACGTTACCTGGCTCATGATTTGAAGATGCAGG GTGCTGGTGTTGGTGTTGGTGTCGGCTGGTCTTCCGGAAGAACAGCTGCT GCAGCATCAACAAGCGGAACCTCCGTACTACCCATCCTCCCTCTTGGAGC ATCGAATACGGCAATCAGAGGTCATCCGTACACGACCACCTGTCCATCTC CGACCACATCTCTGCAGATGGCAACTTCGCGGCCGGGATCAACGGTCGCT GCGGAGACGACCTACGTGAACGATCGAAGAATTGTCCACATTTCCACTCG ATATGCACAGCTGCGAAGCGAGCAACAGCAGCGGTCGGGGTCGTCTGAGT TACCCCCCACAATCAGCGATATCATCGCCCGCCAGGCTGCTGTGAGCGTT CGCCGAGCGGCCGAGCTCGTGAGGTTCGGGGCCGTATACATTGGCGAGGA GACGGTCAACGGCGGAGGGAAAACGCGGACGCCGGGTAAGGGAAAGACGA AGAGGCATCCAGGGGGTGAGGGAGAAGAGCCTGTTAGCGTCGTTAAAGGA ACAGCGATCTCGGAAGCACAGAGACGAAAAATAAACTCGAAGTCGGCAGG CGAGCCCCCGTTCGTCGGGACGAGCTTCGCTCATATGCGGTTGCGGCGAC TCGACGGGTCCGAGGCGCTGTCTCCTCCTCCCCCGAACGCCTACCTTCGT GTCCACTGTGATCCTCGCACCTTCCCGGCGGCGCGGGCGACGGACTGGCG AGAGCGGCTGGTGGCCGTTACGGAGGACTACCTCGTAGTGGACAAACCTC CGGGCGTACCGAGCGTCCCGACCATCGACAACGCGGTCGAAAACGCCCTC CATCAGGCCGGACTCGCCTTGGCCTCCGCGTCCATCTTTGACCGCAGCAA CAGTGGCGGCGTGGGTGGTACCGACAATGATTCGCCTCTGCCGCCTCCTA GCCTTCACGCCGTCTCACGGCTGGACGTATGCACCTCGGGCCTAATTATC TTCGCTCGCAACGCGCCCTCCGCCGCGACTCTCAACCGATTGTTTAGGGA GCGAGGGATCTCCAAGCGCTACCTCGCACTCCTCGCTCCGGGCCCCGCGG TCAGACTGGGCCTGACCACTCACTGCTGCCGCTCGAGGGCCTTCGACGGC CGGAGTCGTCCCAGGCTGTACGCCAACTACGACACAGAACTCCTTGAGGG GGGCAAGTGGGGTGGCGCGTGGATCGAAGCGCGTTCGACCATCCTCCTTT GCGCGCCGGTGACCGGGAGGGCGGTGGTGGAAGCCGTAGAGGGAGACCGC GCGGAAGCGGAAGCAGCGACGGAAATATCGGGTGCACGTGTGGTCGCCGC GTCGCTAGAAGCAGAGCTGGCGGTGGGGTTAGAGGCAGCGCGGGCGAGGT CTGGAGACGGAGCTGCCGCTGGTGGAGTTCCGGCGCCCTACGGCCGCAAT GCTCTCGGAATGACAGATTCAGGGGTAGCTCTAGATGCGGAGGGAGCGAT GATGACGGCGGCAAGAGAGCAGCAGCGCTACCATCCACCGCACTTATGCG TGATGGAGCTCGGTACGGGCAGAACGCACCAGCTTCGCCTGCAGCTTGCG GCGATGGGGGCGGCGATCATCGGGGACACACGTTACCGGGGAGTGGTCGG AAGAGTCCATCGTGGAGTTCCCGCCGATGACCGGATGGACATTTTCGGTC CTGAGCCGGACTCGATCGCACTGCAGGCGGCGCGATTGGAGTTTGAGTGG GAGGGTGAGCGTATCGTTTACTCCGCCAAGCGGCCGCCGTGGGCCTCTGA GAACAGTGCGCAGTATCTCGAACATTCGGAAAACTATAATTAGAGCCAAG GCATACTCGGCGCGGTTTGAGTTCTCGAGTATGTATTAATAGGTATATAC TCTGTTTTCCGCAGGCGTCGAACCTTCCGTTTTTAACCCCAATTTTTCAA TCTCCTGCGTGATTCTCTTGTAGAAACTTTTGACAGGTCTCGTTAAAGAG CGACGGGCTCGCACTGCACGCCACAGCGAAGCAAACCTTAGGCCCAAACG CCTTAACCAGCGTCATCGCTTCGCGCCCCACGCGACTGCGGTCGTGGTTC CTTCGCATTCAAAAGTTGACGCTTGGCCGAGTATCGGGGGGGGAGTTTCG AAACAGTTGCGCTATGGTGTTCGTAGTCATTAAGGAAATATGCTGTACAA TAGTTTTGAC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig874:35524..37783-

>mRNA_A-nodosum_M_contig874.6.1 ID=mRNA_A-nodosum_M_contig874.6.1|Name=mRNA_A-nodosum_M_contig874.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1869bp|location=Sequence derived from alignment at A-nodosum_M_contig874:35524..37783- (Ascophyllum nodosum dioecious)
ATGGTGCTCTTCAAACTCGGCGCGCCGTCGACCTGTCTTGGATTACGTTA
CCTGGCTCATGATTTGAAGATGCAGGGTGCTGGTGTTGGTGTTGGTGTCG
GCTGGTCTTCCGGAAGAACAGCTGCTGCAGCATCAACAAGCGGAACCTCC
GTACTACCCATCCTCCCTCTTGGAGCATCGAATACGGCAATCAGAGGTCA
TCCGTACACGACCACCTGTCCATCTCCGACCACATCTCTGCAGATGGCAA
CTTCGCGGCCGGGATCAACGGTCGCTGCGGAGACGACCTACGTGAACGAT
CGAAGAATTGTCCACATTTCCACTCGATATGCACAGCTGCGAAGCGAGCA
ACAGCAGCGGTCGGGGTCGTCTGAGTTACCCCCCACAATCAGCGATATCA
TCGCCCGCCAGGCTGCTGTGAGCGTTCGCCGAGCGGCCGAGCTCGTGAGG
TTCGGGGCCGTATACATTGGCGAGGAGACGGTCAACGGCGGAGGGAAAAC
GCGGACGCCGGGTAAGGGAAAGACGAAGAGGCATCCAGGGGGTGAGGGAG
AAGAGCCTGTTAGCGTCGTTAAAGGAACAGCGATCTCGGAAGCACAGAGA
CGAAAAATAAACTCGAAGTCGGCAGGCGAGCCCCCGTTCGTCGGGACGAG
CTTCGCTCATATGCGGTTGCGGCGACTCGACGGGTCCGAGGCGCTGTCTC
CTCCTCCCCCGAACGCCTACCTTCGTGTCCACTGTGATCCTCGCACCTTC
CCGGCGGCGCGGGCGACGGACTGGCGAGAGCGGCTGGTGGCCGTTACGGA
GGACTACCTCGTAGTGGACAAACCTCCGGGCGTACCGAGCGTCCCGACCA
TCGACAACGCGGTCGAAAACGCCCTCCATCAGGCCGGACTCGCCTTGGCC
TCCGCGTCCATCTTTGACCGCAGCAACAGTGGCGGCGTGGGTGGTACCGA
CAATGATTCGCCTCTGCCGCCTCCTAGCCTTCACGCCGTCTCACGGCTGG
ACGTATGCACCTCGGGCCTAATTATCTTCGCTCGCAACGCGCCCTCCGCC
GCGACTCTCAACCGATTGTTTAGGGAGCGAGGGATCTCCAAGCGCTACCT
CGCACTCCTCGCTCCGGGCCCCGCGGTCAGACTGGGCCTGACCACTCACT
GCTGCCGCTCGAGGGCCTTCGACGGCCGGAGTCGTCCCAGGCTGTACGCC
AACTACGACACAGAACTCCTTGAGGGGGGCAAGTGGGGTGGCGCGTGGAT
CGAAGCGCGTTCGACCATCCTCCTTTGCGCGCCGGTGACCGGGAGGGCGG
TGGTGGAAGCCGTAGAGGGAGACCGCGCGGAAGCGGAAGCAGCGACGGAA
ATATCGGGTGCACGTGTGGTCGCCGCGTCGCTAGAAGCAGAGCTGGCGGT
GGGGTTAGAGGCAGCGCGGGCGAGGTCTGGAGACGGAGCTGCCGCTGGTG
GAGTTCCGGCGCCCTACGGCCGCAATGCTCTCGGAATGACAGATTCAGGG
GTAGCTCTAGATGCGGAGGGAGCGATGATGACGGCGGCAAGAGAGCAGCA
GCGCTACCATCCACCGCACTTATGCGTGATGGAGCTCGGTACGGGCAGAA
CGCACCAGCTTCGCCTGCAGCTTGCGGCGATGGGGGCGGCGATCATCGGG
GACACACGTTACCGGGGAGTGGTCGGAAGAGTCCATCGTGGAGTTCCCGC
CGATGACCGGATGGACATTTTCGGTCCTGAGCCGGACTCGATCGCACTGC
AGGCGGCGCGATTGGAGTTTGAGTGGGAGGGTGAGCGTATCGTTTACTCC
GCCAAGCGGCCGCCGTGGGCCTCTGAGAACAGTGCGCAGTATCTCGAACA
TTCGGAAAACTATAATTAG
back to top