mRNA_A-nodosum_M_contig873.4.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig873.4.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE) HSP 1 Score: 210 bits (535), Expect = 3.830e-59 Identity = 107/222 (48.20%), Postives = 148/222 (66.67%), Query Frame = 2
Query: 2 YDMVVNSSFTRNFAAVQGGALLHSGVLVALFNCTFESNVAGEDGLAVMSLGIAENLSALSFQNNSFFCPLGKYGFTEDVNEFVEGSDTCRRSVVCSLCTDPQCEAHTG--IDMDETTVPVCELVPDGVNITGKSGMTLETLNLMPGFYRTSNQSREVLECYREEACIGGSNVGRYCAEGYAGPYCAACDEGYGSGFQYSCNSCQGSDMWAGISGAVAVLVVA 661
YD + + F N A GGA LHSGVLV L TF N A + GLAV SLGIA N++ +F++N+++C G+YG+ ++ E E S TCR VVCS C CE + G + +++ VP+CE GV+ +G G+TL LNL+ G+YRTS +S+ VL+CY+EEACIGG++V +YC EGY G YCA CDEGY SG+Q+SC+ C G ++ + I +VA+ VA
Sbjct: 475 YDGIKDCRFEDNLAVGSGGAYLHSGVLVELDRSTFVGNRARDAGLAVQSLGIAGNITDTTFESNTYYCSSGQYGYEYEIGE-DEVSGTCRFGVVCSSCA-ASCEDNPGSVVVVNDAHVPICETAMTGVDTSGDGGVTLPELNLLRGYYRTSAESQNVLKCYQEEACIGGTDVSQYCQEGYRGAYCAVCDEGYASGYQFSCSICDGENLRSAIGTSVALFFVA 694
BLAST of mRNA_A-nodosum_M_contig873.4.1 vs. uniprot
Match: D7FUB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB6_ECTSI) HSP 1 Score: 194 bits (494), Expect = 2.620e-56 Identity = 100/215 (46.51%), Postives = 130/215 (60.47%), Query Frame = 2
Query: 2 YDMVVNSSFTRNFAAVQGGALLHSGVLVALFNCTFESNVAGEDGLAVMSLGIAENLSALSFQNNSFFCPLGKYGFTEDVNEFVEGSDTCRRSVVCSLCTDPQCEAHTGID-----MDETTVPVCELVPDGVNITGKSGMTLETLNLMPGFYRTSNQSREVLECYREEACIGGSNVGRYCAEGYAGPYCAACDEGYGSGFQYSCNSCQGSDMWAGI 631
YD+V + SF NFAA+ GGALLHSGVLV + IAEN + ++F N+F+C G+YG + E +DTCR VVCS C CE +D +++ VP C+ V GVN++G +G TL+TL+L G+YRTS +S +LEC+REEAC+GGS G YCA GY G YCAAC+EGY SG QYSC SC G + + I
Sbjct: 248 YDLVQDCSFQANFAALSGGALLHSGVLVGVHXXXXXXXXXXXXXXXXXXXXIAENFTDVTFAENTFYCAPGQYGSDAHFLD-EEVADTCRLEVVCSRCVSSPCEDDDMLDNGISVLEDNVVPHCKAVAVGVNVSGNAGTTLQTLDLESGYYRTSAESDIILECHREEACVGGSTAGEYCATGYQGAYCAACEEGYASGLQYSCKSCGGDNATSAI 461
BLAST of mRNA_A-nodosum_M_contig873.4.1 vs. uniprot
Match: D7FWD7_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD7_ECTSI) HSP 1 Score: 155 bits (392), Expect = 4.930e-40 Identity = 75/198 (37.88%), Postives = 120/198 (60.61%), Query Frame = 2
Query: 41 AAVQGGALLHSGVLVALFNCTFESNVAGEDGLAVMSLGIAENLSALSFQNNSFFCPLGKYGFTEDVNEFVEGSDTCRRSVVCSLCTDPQCEA-HTGIDMDETTVPVCELVPDGVNITGKSGMTLETLNLMPGFYRTSNQSREVLECYREEACIGGSNVGRYCAEGYAGPYCAACDEGYGSGFQYSCNSCQGSDMWAGI 631
A + GG + H+G L + F SN AG+DG AV S+G+ + ++F +N+ CPLG+Y + ++ + D+CR + C+ C+ C+A + + M ++T+PVC + +G + SG T+ TL+L G+YRTS +S+ V+ECY AC GG++ YCA+GY GPYC+ C +GY G Y C+ C G+ M + +
Sbjct: 225 AEISGGTIFHTGYL-GMIETVFASNEAGQDGTAVFSIGVVQQALNVTFASNTLNCPLGEYAYDKEAED-----DSCRFELACARCS-ADCDAIPSSVTMADSTIPVCLELMEGTKASS-SGTTVATLDLQEGYYRTSAESQVVVECYLTGACAGGTDPENYCADGYEGPYCSVCADGYAPGTAYQCHECSGTSMGSAV 414
BLAST of mRNA_A-nodosum_M_contig873.4.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE) HSP 1 Score: 147 bits (371), Expect = 4.470e-37 Identity = 72/196 (36.73%), Postives = 116/196 (59.18%), Query Frame = 2
Query: 47 VQGGALLHSGVLVALFNCTFESNVAGEDGLAVMSLGIAENLSALSFQNNSFFCPLGKYGFTEDVNEFVEGSDTCRRSVVCSLCTDPQCEA-HTGIDMDETTVPVCELVPDGVNITGKSGMTLETLNLMPGFYRTSNQSREVLECYREEACIGGSNVGRYCAEGYAGPYCAACDEGYGSGFQYSCNSCQGSDMWAGI 631
+ GG + H+G L + F SN AG+DG AV S+G+ + ++F +N+ CP G+ + ++ + D+CR + C+ C+ C+A + + M ++T+PVC +G + SG T+ TL+L G+YRTS +S+ V+ECY AC GG++ YCA+GY GPYC+ C +GY G Y C+ C G+ M + +
Sbjct: 468 ISGGTIFHTGHL-GMIETVFASNEAGQDGTAVFSMGVVQKALNVAFASNTLNCPPGENAYDKEAED-----DSCRFELACARCS-ADCDAIPSSVTMADSTIPVCVESMEGTKASS-SGTTVATLDLQEGYYRTSAESQVVVECYLTSACAGGTDPKNYCADGYEGPYCSVCADGYAPGTAYQCHECSGTSMGSAV 655
BLAST of mRNA_A-nodosum_M_contig873.4.1 vs. uniprot
Match: A0A6H5JUB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB2_9PHAE) HSP 1 Score: 135 bits (339), Expect = 6.770e-33 Identity = 73/166 (43.98%), Postives = 100/166 (60.24%), Query Frame = 2
Query: 53 GGALLHSGVLVALFNCTFESNVAGEDGLAVMSLGIAENLSALSFQNNSFFCPLGKYGFTEDVNEFVEGSDTCRRSVVCSLCTDPQCEA-HTGIDMDETTVPVCELVPDGVNITGKSGMTLETLNLMPGFYRTSNQSREVLECYREEACIGGSNVGRYCAEGYAGPY 547
GGA LHSG+LV+L + TF N AG GLAV SLGI ENL+ +F++N+++C G+Y D +E S T R VC+ C E + + + VP+CE + G + G +G T+ L L P +YRTS SREVL+C++EEAC+GG YCA GY G +
Sbjct: 240 GGAYLHSGLLVSLADTTFVGNRAGAAGLAVSSLGIIENLTDTTFESNTYYCQSGQYDIGADEDEV---SGTYRFDEVCTCCAVSNAEIPESMVVANNAFVPICETIMKGAS--GNAGATVAALELDPDYYRTSADSREVLQCHQEEACMGGVETSEYCASGYEGAF 400
BLAST of mRNA_A-nodosum_M_contig873.4.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI) HSP 1 Score: 129 bits (324), Expect = 9.500e-31 Identity = 70/167 (41.92%), Postives = 98/167 (58.68%), Query Frame = 2
Query: 188 NNSFFCPLGKYGFTEDV--NEFVEGSDTCRRSVVCSLCT---DPQCEAHTGIDMDETTVPVCELVPDGVNITGKSGMTLETLNLMPGFYRTSNQSREVLECYREEACIGGSNVGRYCAEGYAGPYCAACDEGYGSGFQYSCNSCQGSD-----MWAGISGAVAVLVV 658
+N F+C G++G TE + + G+D CR VCS C D + E+ + +D T+P CE P+G T + G TL TL ++PGFYR+S S ++ EC+ ++AC GGS VG YCAEGY GPYCA C GY G+ +C SC G ++A GA+A+ V
Sbjct: 513 DNDFYCEEGEFG-TETLIDKDLFGGADQCRFGRVCSRCASECDSELESAAEL-VDAETLPTCEEAPEGSRTT-RRGATLATLEILPGFYRSSETSTDIRECFHKQACEGGSAVGTYCAEGYIGPYCAVCSAGYSPGYSRTCKSCMGDSKKSALVFAAAIGALALAAV 676
BLAST of mRNA_A-nodosum_M_contig873.4.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE) HSP 1 Score: 125 bits (315), Expect = 1.520e-29 Identity = 66/162 (40.74%), Postives = 96/162 (59.26%), Query Frame = 2
Query: 191 NSFFCPLGKYGFTEDV--NEFVEGSDTCRRSVVCSLCTDPQCEAH---TGIDMDETTVPVCELVPDGVNITGKSGMTLETLNLMPGFYRTSNQSREVLECYREEACIGGSNVGRYCAEGYAGPYCAACDEGYGSGFQYSCNSCQGSDMWAGISGAVAVLVVA 661
N F+C G++G TE + + G+D CR VCS C +C + T +D T+P CE P+G T + G TL TL ++PGFYR+S S ++ EC+ ++AC GGS +G YC+EGY GPYCA C GY G+ +C SC G+ + + A A+ ++A
Sbjct: 490 NDFYCEEGEFG-TETLIDKDLFGGADQCRFRRVCSRCAS-ECGSELERTAELVDADTLPTCETAPEGSRTT-RRGATLATLEVLPGFYRSSETSTDIRECFHKKACDGGSAIGTYCSEGYIGPYCAVCAAGYSPGYSRTCKSCMGNSKKSALVFAAAIGLLA 648
BLAST of mRNA_A-nodosum_M_contig873.4.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI) HSP 1 Score: 124 bits (310), Expect = 7.000e-29 Identity = 67/160 (41.88%), Postives = 92/160 (57.50%), Query Frame = 2
Query: 194 SFFCPLGKYGFTEDVNEFVEGSDTCRRSVVCSLCTDPQCEAHTGIDM---DETTVPVCELVPDGVNITGKSGMTLETLNLMPGFYRTSNQSREVLECYREEACIGGSNVGRYCAEGYAGPYCAACDEGYGSGFQYSCNSCQGSDMWAG--ISGAVAVLVV 658
SF+C G F+ +V +EG D CR +VCS C +C + ++ D +P CE VP+G T + G TL TL ++PG+YR+S S ++ EC+ E+AC GG VG YCA GY GPYCA C G+ G+ +SC SC G + AV VLV+
Sbjct: 526 SFYCEEGT--FSTEVE--IEGEDVCRFGLVCSRCAS-ECASELEDEVTVADPDLLPACEAVPEGAQTTSRGG-TLATLEILPGYYRSSATSTDIRECFYEDACEGGKVVGEYCAAGYTGPYCAVCTAGFSPGYFHSCKSCMGDSRRRAFYVVSAVGVLVL 679
BLAST of mRNA_A-nodosum_M_contig873.4.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 117 bits (294), Expect = 9.520e-27 Identity = 77/223 (34.53%), Postives = 117/223 (52.47%), Query Frame = 2
Query: 2 YDMVVNSSFTRNFAAVQGGALLHSGVLVALFNCTFESNVAGEDG-LAVMSLGIAENLSALSFQNNSFFCPLGKY-GFTEDVNEFVEGSDTCRRSVVCSLCTDPQCEAHTGIDMDETTVPVC-ELVPDGVNITGKSGMTLETLNLMPGFYRTSNQSREVLECYREEACIGG-SNVGRYCAEGYAGPYCAACDEGYGSGFQYSCNSCQGSDMWAGISGAVAVLVV 658
+D V+++F N AA GGAL +G ++ +C+F N + ++G AV ++G E+ +SF N F CP G + G+ + F + C+ + V DP VP C +L+ + G+ TLETL++ G++R + EVL CY +AC+GG + YC EGY GPYCA C EGY + ++C +C SD GI+ A A+ VV
Sbjct: 1030 HDYFVDTTFEDN-AAGTGGALRLAGT-ASINSCSFVENFSDDEGGAAVSNIGTVESTENISFSANGFDCPSGTFLGYNASADLFEAVCNGCQTACVGCAFADP------------LLVPTCTDLLEHSTSSDGRD--TLETLSIQAGYWRATTSGTEVLACYHADACLGGVTGTSGYCLEGYEGPYCAICSEGYSAQMSFTCRTC--SDNAGGIALAAALAVV 1234
BLAST of mRNA_A-nodosum_M_contig873.4.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 114 bits (284), Expect = 2.040e-25 Identity = 75/221 (33.94%), Postives = 109/221 (49.32%), Query Frame = 2
Query: 5 DMVVNSSFTRNFAAVQGGALLHSGVLVALFNCTFESNVAGE-DGLAVMSLGIAENLSALSFQNNSFFCPLGKY-GFTEDVNEFVEGSDTCRRSVVCSLCTDPQCEAHTGIDMDETTVPVCELVPDGVNITGKSGMTLETLNLMPGFYRTSNQSREVLECYREEACIGG-SNVGRYCAEGYAGPYCAACDEGYGSGFQYSCNSCQGSDMWAGISGAVAVLVV 658
D + NS F N A GGAL +G + NC+F N + E +G AV ++G +++ SF N F CP G + T V+ F + C + C C + + + P+C V D G +TL+TL++ GF+R S S EVL CY +AC+GG + YC EGY GPYC C +GY ++C+ C + +G +AV VV
Sbjct: 930 DAIENSVFEGNSAGT-GGALRLAGEAY-ISNCSFRENTSDEGEGAAVSNIGFISSITNASFDGNGFDCPAGTFRNVTGSVDHFEAICNGCETT--CDGC----------VFAEGSLAPICTEVMDHSTSDG-GNVTLQTLSIDRGFWRASTSSTEVLACYHADACLGGVTGASGYCEEGYEGPYCGICSDGYTEQLSFACSKCSENS-----AGGIAVAVV 1130 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig873.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig873.4.1 >prot_A-nodosum_M_contig873.4.1 ID=prot_A-nodosum_M_contig873.4.1|Name=mRNA_A-nodosum_M_contig873.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=219bp MVVNSSFTRNFAAVQGGALLHSGVLVALFNCTFESNVAGEDGLAVMSLGIback to top mRNA from alignment at A-nodosum_M_contig873:191302..192749- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig873.4.1 ID=mRNA_A-nodosum_M_contig873.4.1|Name=mRNA_A-nodosum_M_contig873.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1448bp|location=Sequence derived from alignment at A-nodosum_M_contig873:191302..192749- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig873:191302..192749- >mRNA_A-nodosum_M_contig873.4.1 ID=mRNA_A-nodosum_M_contig873.4.1|Name=mRNA_A-nodosum_M_contig873.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=657bp|location=Sequence derived from alignment at A-nodosum_M_contig873:191302..192749- (Ascophyllum nodosum dioecious)back to top |