mRNA_A-nodosum_M_contig873.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig873.1.1
Unique NamemRNA_A-nodosum_M_contig873.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig873.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig873contigA-nodosum_M_contig873:112057..112818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size764
Hectar predicted targeting categoryother localisation
Exons1
Cds size720
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870271.039613-UTR-A-nodosum_M_contig873:112056..1120981680870271.039613-UTR-A-nodosum_M_contig873:112056..112098Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig873 112057..112098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870271.0510306-CDS-A-nodosum_M_contig873:112098..1128181680870271.0510306-CDS-A-nodosum_M_contig873:112098..112818Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig873 112099..112818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig873.1.1prot_A-nodosum_M_contig873.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig873 112099..112818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig873.1.1

>prot_A-nodosum_M_contig873.1.1 ID=prot_A-nodosum_M_contig873.1.1|Name=mRNA_A-nodosum_M_contig873.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=240bp
MDGVGHITSKEYACAGFDDTQKNNRFEKHAPDVKNKSCAHVACTKLTLLG
MAGTRTPENCGQHAKDRIVNGVAETKSAVYGTRHAPDGKVRGLNKKCRTE
GCGKQSSFGVAGTKTREYCAHHAKDGMVNVGKRKCRAEGCGKQSSFGMAG
TKTALYCAQHAPHGMVNVSNRECRTEGCRTQASLGEAGSKTAKYCAQHAL
QGMVNVSTRKCRVEGCGKLSSFGMAGTKTVEFCAQHAPDG
back to top

mRNA from alignment at A-nodosum_M_contig873:112057..112818+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig873.1.1 ID=mRNA_A-nodosum_M_contig873.1.1|Name=mRNA_A-nodosum_M_contig873.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=762bp|location=Sequence derived from alignment at A-nodosum_M_contig873:112057..112818+ (Ascophyllum nodosum dioecious)
GTGCGCCGCTGATACAACACTGACAGCTTCAAATACCAAACTATGGACGG
GGTTGGTCACATCACTAGTAAGGAATATGCCTGTGCAGGTTTTGACGACA
CACAGAAAAATAACCGTTTCGAAAAGCACGCTCCGGACGTCAAGAACAAA
AGTTGTGCCCATGTAGCCTGCACCAAGCTAACCTTGCTTGGCATGGCGGG
TACGAGAACGCCGGAGAACTGCGGGCAGCATGCCAAGGACAGGATAGTCA
ACGGTGTGGCCGAAACGAAATCAGCGGTATACGGCACTCGACACGCCCCG
GACGGGAAGGTCCGTGGCTTAAACAAAAAGTGCAGAACCGAAGGCTGCGG
CAAGCAGTCGTCGTTTGGAGTGGCCGGTACGAAAACGCGGGAGTATTGCG
CACATCACGCCAAGGATGGGATGGTCAACGTCGGCAAGAGGAAGTGCAGA
GCCGAAGGCTGTGGCAAGCAATCGTCGTTCGGAATGGCTGGAACAAAAAC
GGCGCTGTACTGCGCACAACACGCTCCGCATGGGATGGTCAACGTCTCCA
ACAGAGAGTGCAGAACTGAAGGCTGCCGTACGCAAGCGTCGCTTGGAGAG
GCCGGTTCGAAAACGGCGAAGTACTGCGCTCAACACGCCCTTCAAGGGAT
GGTCAACGTCTCCACGAGGAAGTGCAGAGTCGAAGGCTGCGGCAAGCTAT
CGTCGTTTGGAATGGCCGGAACAAAAACGGTGGAGTTCTGTGCACAGCAC
GCCCCGGACGGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig873:112057..112818+

>mRNA_A-nodosum_M_contig873.1.1 ID=mRNA_A-nodosum_M_contig873.1.1|Name=mRNA_A-nodosum_M_contig873.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at A-nodosum_M_contig873:112057..112818+ (Ascophyllum nodosum dioecious)
ATGGACGGGGTTGGTCACATCACTAGTAAGGAATATGCCTGTGCAGGTTT
TGACGACACACAGAAAAATAACCGTTTCGAAAAGCACGCTCCGGACGTCA
AGAACAAAAGTTGTGCCCATGTAGCCTGCACCAAGCTAACCTTGCTTGGC
ATGGCGGGTACGAGAACGCCGGAGAACTGCGGGCAGCATGCCAAGGACAG
GATAGTCAACGGTGTGGCCGAAACGAAATCAGCGGTATACGGCACTCGAC
ACGCCCCGGACGGGAAGGTCCGTGGCTTAAACAAAAAGTGCAGAACCGAA
GGCTGCGGCAAGCAGTCGTCGTTTGGAGTGGCCGGTACGAAAACGCGGGA
GTATTGCGCACATCACGCCAAGGATGGGATGGTCAACGTCGGCAAGAGGA
AGTGCAGAGCCGAAGGCTGTGGCAAGCAATCGTCGTTCGGAATGGCTGGA
ACAAAAACGGCGCTGTACTGCGCACAACACGCTCCGCATGGGATGGTCAA
CGTCTCCAACAGAGAGTGCAGAACTGAAGGCTGCCGTACGCAAGCGTCGC
TTGGAGAGGCCGGTTCGAAAACGGCGAAGTACTGCGCTCAACACGCCCTT
CAAGGGATGGTCAACGTCTCCACGAGGAAGTGCAGAGTCGAAGGCTGCGG
CAAGCTATCGTCGTTTGGAATGGCCGGAACAAAAACGGTGGAGTTCTGTG
CACAGCACGCCCCGGACGGG
back to top