mRNA_A-nodosum_M_contig8729.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8729.1.1
Unique NamemRNA_A-nodosum_M_contig8729.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8729.1.1 vs. uniprot
Match: D8LU10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU10_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 5.660e-10
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 3 
Query:    6 HTAHFVASFLVILDEPEARKLYNRVRAMYNPFHTPGCGSIPPPEQWQGVRSYCHNMLCRVMEDIVTQLIRTQPPKASVCNDGVYREIGLVGTESTSSSA 302
            H AH V  +L  +D+  AR +YNR+R  YNPF   G   +P  E+W GV ++C ++ CR +E+I+T    T     S+  DG+    G  GT++    A
Sbjct:  329 HKAHMVLVWLAAIDDSRARAMYNRLRGSYNPFRRAGSRPVPLLEEWHGVATFCDDVYCRAIENIITSEPFTALAAPSI--DGIDVCDGAKGTDNCKGEA 425
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8729.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU10_ECTSI5.660e-1036.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8729contigA-nodosum_M_contig8729:1131..3099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1092
Hectar predicted targeting categoryother localisation
Exons2
Cds size762
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870270.4880428-UTR-A-nodosum_M_contig8729:1130..13741680870270.4880428-UTR-A-nodosum_M_contig8729:1130..1374Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8729 1131..1374 -
1680870270.5254548-UTR-A-nodosum_M_contig8729:3013..30991680870270.5254548-UTR-A-nodosum_M_contig8729:3013..3099Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8729 3014..3099 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870270.5031776-CDS-A-nodosum_M_contig8729:1374..20411680870270.5031776-CDS-A-nodosum_M_contig8729:1374..2041Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8729 1375..2041 -
1680870270.514194-CDS-A-nodosum_M_contig8729:2918..30131680870270.514194-CDS-A-nodosum_M_contig8729:2918..3013Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8729 2919..3013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8729.1.1prot_A-nodosum_M_contig8729.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8729 1375..3013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8729.1.1

>prot_A-nodosum_M_contig8729.1.1 ID=prot_A-nodosum_M_contig8729.1.1|Name=mRNA_A-nodosum_M_contig8729.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=254bp
MYNPFHTPGCGSIPPPEQWQGVRSYCHNMLCRVMEDIVTQLIRTQPPKAS
VCNDGVYREIGLVGTESTSSSAEERECSTVANRKRVELPDPEAANYDGYV
DCDGVGYPMGSISLTAWADKWPTEPEDSRVRTREAITSAAPRFRFDCLPT
TAVGSPSADREQKKTASLLVVDGGGGGSGSNVEYVKRLEGEEENGISPPP
KYSSKGSAIVELNLDKEDWGGGSSSNRTSCPIDITAEDWLHAAATVNPMP
TTK*
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mRNA from alignment at A-nodosum_M_contig8729:1131..3099-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8729.1.1 ID=mRNA_A-nodosum_M_contig8729.1.1|Name=mRNA_A-nodosum_M_contig8729.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1969bp|location=Sequence derived from alignment at A-nodosum_M_contig8729:1131..3099- (Ascophyllum nodosum dioecious)
GGTCACACACTGCACATTTCGTGGCGTCTTTTCTGGTCATCCTGGACGAG
CCCGAAGCTCGAAAGCTGTACAACAGAGTACGCGCCATGTACAACCCTTT
TCACACGCCAGGCTGCGGGTCGATACCACCACCAGAGCAGTGGCAGGGCG
TGCGCTCGTACTGCCATAATATGCTCTGTAGGTGCGTCACCACAAAAAAA
GCTTTGTGGTGCTTATATTCACGTCACGCCTGGAGGGTTGTGCATTTAAG
ACCCTGTCAACAAGGACTGGTGTAAATATTTTCCTTATGGCGTGCGTTAT
CAGGTCGTAAATCAACCACGTAGTCCAGTCTATGCTGGCTGGTCTTGTCC
TAGGTAGTAAATTTCAAATAACGAAAATCTCGGTCTAAGGGTTCGAAGCC
CCATGTATTATCACCTCCGAAGAGGTTCCCTTTTCCGTTACCTGCCTAGT
GGTTAGGTTGTCTCAGTCCCATAGTTTTCAACAGGGTGTATAGAGTATTC
CAATCGTTACCGATCCTCTGCCATGGATAACTCGACAGAACCATCTCAAT
CACCAGTGCTACCGCTAAACCCGTCAGGGGCTGGTCTAGATGGTTAATCT
ACGATTCCAATAATCTTATGCACTTGACGTGCTTGTGGTTGCTTCGCACC
CCGGATCCTGGTGATAGCTTTATGTCTTCAGCTTACGGGCCCCTCTTTGT
AGGGGTGCTTAAAAGTTTGATGTACTATAACGTTCGAGAAGAAGCGAAAA
TTATTGGCCATGTCGTCGAAAGCATGGTGTACTTGACGTTTGAACATAAC
TTTCTTTCCAATAAGTGGGTGTTTTCTTTGCCCGGGATCGAAGGACGTTT
CACATGAATGCAGATGTGGATACGTGCCCCCCCTAGCTACCGTGGGCGAC
GAGAGACTGGCTCAGGTAGGACGCGGAAGGTCATGGGGTACTGTTCTACT
ACGATTTTTCTATGTCCTGGGTTTTATTCTCCATTGCCAATAAAACTGCA
GGGGCCAGTTTTCAACGCCGACTCTCACCGTCGTCCTTTATTCTTCTTTC
TCGCGCAGAGTAATGGAGGATATCGTGACGCAACTGATCCGTACACAGCC
ACCCAAAGCCAGCGTGTGTAACGACGGAGTCTACAGGGAAATCGGGCTTG
TCGGAACGGAATCGACTTCCTCTTCCGCAGAGGAAAGAGAATGCAGCACC
GTCGCGAACAGGAAGCGTGTTGAACTCCCTGACCCTGAAGCAGCAAATTA
CGATGGCTACGTTGACTGCGATGGAGTAGGATACCCGATGGGATCCATAT
CACTGACAGCATGGGCCGATAAATGGCCTACAGAGCCCGAAGACAGTAGA
GTTCGCACTCGAGAGGCCATTACTTCTGCTGCCCCTCGTTTTAGGTTTGA
TTGTCTTCCTACTACCGCCGTTGGTTCACCTTCGGCCGACAGGGAACAAA
AGAAGACTGCCTCCCTATTGGTGGTAGACGGCGGCGGCGGCGGCAGCGGC
AGCAATGTCGAATATGTAAAACGTTTGGAGGGAGAAGAAGAGAACGGCAT
CTCGCCGCCGCCGAAATACTCCAGTAAGGGAAGCGCGATAGTGGAACTAA
ACCTTGATAAGGAAGATTGGGGAGGTGGTTCTTCGTCTAATAGAACTAGT
TGCCCTATCGATATCACTGCGGAAGACTGGCTACATGCGGCTGCGACTGT
GAACCCCATGCCAACCACTAAATGATGATTAGCTCCCTTGGTTGATTGTT
GGCCTGGATGGCGTGGCAGAAGATACAAGTAGGTAATCATTGGCTCACAC
CGTACAGAGCGAGATTTTGTGAATATGTTGCCTGCCTTATGTTAGCAGCT
TCTTGTTTTTTTTATCATGGACGCTGTACGTAGGAATAAATTACCAGCAA
CATAACAAGCAAGGAAAGGCATTAAGCTGCGAAATGGTATGTAATATGAC
GTGAACTCCGGAAATCTCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8729:1131..3099-

>mRNA_A-nodosum_M_contig8729.1.1 ID=mRNA_A-nodosum_M_contig8729.1.1|Name=mRNA_A-nodosum_M_contig8729.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at A-nodosum_M_contig8729:1131..3099- (Ascophyllum nodosum dioecious)
ATGTACAACCCTTTTCACACGCCAGGCTGCGGGTCGATACCACCACCAGA
GCAGTGGCAGGGCGTGCGCTCGTACTGCCATAATATGCTCTGTAGAGTAA
TGGAGGATATCGTGACGCAACTGATCCGTACACAGCCACCCAAAGCCAGC
GTGTGTAACGACGGAGTCTACAGGGAAATCGGGCTTGTCGGAACGGAATC
GACTTCCTCTTCCGCAGAGGAAAGAGAATGCAGCACCGTCGCGAACAGGA
AGCGTGTTGAACTCCCTGACCCTGAAGCAGCAAATTACGATGGCTACGTT
GACTGCGATGGAGTAGGATACCCGATGGGATCCATATCACTGACAGCATG
GGCCGATAAATGGCCTACAGAGCCCGAAGACAGTAGAGTTCGCACTCGAG
AGGCCATTACTTCTGCTGCCCCTCGTTTTAGGTTTGATTGTCTTCCTACT
ACCGCCGTTGGTTCACCTTCGGCCGACAGGGAACAAAAGAAGACTGCCTC
CCTATTGGTGGTAGACGGCGGCGGCGGCGGCAGCGGCAGCAATGTCGAAT
ATGTAAAACGTTTGGAGGGAGAAGAAGAGAACGGCATCTCGCCGCCGCCG
AAATACTCCAGTAAGGGAAGCGCGATAGTGGAACTAAACCTTGATAAGGA
AGATTGGGGAGGTGGTTCTTCGTCTAATAGAACTAGTTGCCCTATCGATA
TCACTGCGGAAGACTGGCTACATGCGGCTGCGACTGTGAACCCCATGCCA
ACCACTAAATGA
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