mRNA_A-nodosum_M_contig8725.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8725.1.1
Unique NamemRNA_A-nodosum_M_contig8725.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8725.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8725contigA-nodosum_M_contig8725:19815..20815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size405
Hectar predicted targeting categoryother localisation
Exons2
Cds size372
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870270.4313674-CDS-A-nodosum_M_contig8725:19814..199861680870270.4313674-CDS-A-nodosum_M_contig8725:19814..19986Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8725 19815..19986 +
1680870270.4442225-CDS-A-nodosum_M_contig8725:20582..207821680870270.4442225-CDS-A-nodosum_M_contig8725:20582..20782Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8725 20583..20782 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870270.4551284-UTR-A-nodosum_M_contig8725:20782..208151680870270.4551284-UTR-A-nodosum_M_contig8725:20782..20815Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8725 20783..20815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8725.1.1prot_A-nodosum_M_contig8725.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8725 19815..20782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8725.1.1

>prot_A-nodosum_M_contig8725.1.1 ID=prot_A-nodosum_M_contig8725.1.1|Name=mRNA_A-nodosum_M_contig8725.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=124bp
DSGGSCTGLASTIGATTGSSCGCSIKSRSEEKERDGEGRQGIPEHLERLH
PRPGRQTVTRSCPGHGRMDPSKLCRASPFRHLLQRRSSSSASTARRRSKT
SKGTRCTGECDTREQTRTKGRGS*
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mRNA from alignment at A-nodosum_M_contig8725:19815..20815+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8725.1.1 ID=mRNA_A-nodosum_M_contig8725.1.1|Name=mRNA_A-nodosum_M_contig8725.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1001bp|location=Sequence derived from alignment at A-nodosum_M_contig8725:19815..20815+ (Ascophyllum nodosum dioecious)
GACAGCGGCGGCTCCTGCACAGGCCTCGCAAGCACAATCGGTGCCACCAC
CGGATCCTCCTGCGGCTGTAGCATCAAGAGTCGATCGGAGGAAAAGGAGC
GCGATGGCGAAGGCCGCCAAGGGATCCCCGAACATCTGGAACGCCTTCAT
CCGAGGCCAGGGAGGCAAACCGGTGAGTGCATGCTGTATGTTGTACAGTC
CAGTACTGTAGTACAGTAGAGCCGTATAATATCAGCCGATGTGTTGCATC
AACATCCCCTTTGTGTCCACTGCTGTACTGTAAAGTATTGTATGCGCTGT
ATCATACAGTACCCGAGTACTGTCTGTACTACTGCTGTACAGTACTGTAC
TGATGTCTGTGCTGTACTACTGTACTGTACTGCTGTCTAACTGTACTACT
GTACTGTATTGTACTTGTACTGCACGCTGGACTGTACAGCAGTACTGCTG
CGGTACAGCACTAAGCAGCGACATATCATACGTAGACGTATTTCATACTG
TACTGCTGTGCTCCTGTACTGCTGTACAGTACTGCGGCTAGTATTGTACT
GTACTGAACTTCAATGTATAGCTTAAATATTCGCTGTTCTGCTACAGCAG
CAGATATAACCTTTGATTACTGAAAGTACACTGCTGTAGCTTTTGTACAA
CAGCGCCGCACACATTTTCGGGGAAACGTGTGTGTAAGAGATGCTGTACT
TTGAGGTCGAGGGTGAAACAACGCAGATTTGGTGGGCACTCACTCACTTC
TTTTAACTTCCACTTTAGTCACGCGCAGTTGTCCAGGACACGGAAGGATG
GATCCGTCGAAACTGTGCAGAGCGTCACCTTTCCGACACCTGCTCCAACG
CCGAAGCTCATCCAGTGCAAGCACTGCGAGGCGACGTTCCAAAACGAGCA
AGGGTACTCGGTGCACCGGAGAATGCGACACCCGCGAGCAAACGCGCACG
AAGGGACGAGGCTCTTGAAGAGCATGAAAAACGGTGAGAGTGTTGCGATG
T
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8725:19815..20815+

>mRNA_A-nodosum_M_contig8725.1.1 ID=mRNA_A-nodosum_M_contig8725.1.1|Name=mRNA_A-nodosum_M_contig8725.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at A-nodosum_M_contig8725:19815..20815+ (Ascophyllum nodosum dioecious)
GACAGCGGCGGCTCCTGCACAGGCCTCGCAAGCACAATCGGTGCCACCAC
CGGATCCTCCTGCGGCTGTAGCATCAAGAGTCGATCGGAGGAAAAGGAGC
GCGATGGCGAAGGCCGCCAAGGGATCCCCGAACATCTGGAACGCCTTCAT
CCGAGGCCAGGGAGGCAAACCGTCACGCGCAGTTGTCCAGGACACGGAAG
GATGGATCCGTCGAAACTGTGCAGAGCGTCACCTTTCCGACACCTGCTCC
AACGCCGAAGCTCATCCAGTGCAAGCACTGCGAGGCGACGTTCCAAAACG
AGCAAGGGTACTCGGTGCACCGGAGAATGCGACACCCGCGAGCAAACGCG
CACGAAGGGACGAGGCTCTTGA
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