mRNA_A-nodosum_M_contig872.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig872.6.1
Unique NamemRNA_A-nodosum_M_contig872.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig872.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig872contigA-nodosum_M_contig872:85906..88538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1579
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_004150.1
Cds size1014
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig872.6.1prot_A-nodosum_M_contig872.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig872 85926..87993 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870269.550775-UTR-A-nodosum_M_contig872:85905..859251680870269.550775-UTR-A-nodosum_M_contig872:85905..85925Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig872 85906..85925 +
1680870269.6071434-UTR-A-nodosum_M_contig872:87993..885381680870269.6071434-UTR-A-nodosum_M_contig872:87993..88538Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig872 87994..88538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870269.5629015-CDS-A-nodosum_M_contig872:85925..859941680870269.5629015-CDS-A-nodosum_M_contig872:85925..85994Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig872 85926..85994 +
1680870269.5733361-CDS-A-nodosum_M_contig872:86220..863851680870269.5733361-CDS-A-nodosum_M_contig872:86220..86385Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig872 86221..86385 +
1680870269.5839381-CDS-A-nodosum_M_contig872:86718..869551680870269.5839381-CDS-A-nodosum_M_contig872:86718..86955Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig872 86719..86955 +
1680870269.596622-CDS-A-nodosum_M_contig872:87450..879931680870269.596622-CDS-A-nodosum_M_contig872:87450..87993Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig872 87451..87993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig872.6.1

>prot_A-nodosum_M_contig872.6.1 ID=prot_A-nodosum_M_contig872.6.1|Name=mRNA_A-nodosum_M_contig872.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=338bp
MQAVRITTITRQAAAHLTQEGKKAILAVESDILGLEDIPTTGSGDFKAIV
GPTVITSLAGNVERLSHLTPVFKPGCDEVTGDVVWSNEEADKFPWNFKDF
LEKQASGRITARLCSVPTGVTFPQPNGTVYLGWEGTDVKWFWSAGEPEFS
ANWVVTKEEYVNPNPETYRITFLTSTKVPPERSLAQDPSTAQLMFTKEGD
PWYLPNIFNTDVVAAKAIIAPTFGFTRLFGQFVPIFESTVPTEPTGCVST
LTGPVKLTVAPGIFGFPWVFQSGCDGYTITALASAIPSDVKFPEGGKLYL
VWNLANTVQWQWCVDEVPSNVIWTIEKFSRTQPENSK*
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mRNA from alignment at A-nodosum_M_contig872:85906..88538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig872.6.1 ID=mRNA_A-nodosum_M_contig872.6.1|Name=mRNA_A-nodosum_M_contig872.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2633bp|location=Sequence derived from alignment at A-nodosum_M_contig872:85906..88538+ (Ascophyllum nodosum dioecious)
CGAGATTTGCAAACAATAAAATGCAAGCGGTCAGGATCACCACCATAACA
AGGCAGGCGGCAGCCCATCTTACGCAAGAGGGGAAGAAGGTGGGTGGTAA
TGTCCTGCGCGCGATTTGCACGAGAGCCAATCAAGGGAAATTAGAGAGGT
GGCGCGCGACGAGTCTATCGTGAGGAATTATTCGATGGGTCCCACTTTGA
GTGTTGAAGTGAGTCTGATACGTGGATTAGGGTAGATCCAAGATGTTGCG
TTTTGTCAAGATTGAGGACACAGAAGGACTAACCACACATCATCCGCGTG
CTGTGGATTACTCAGGCTATCCTCGCCGTGGAGAGTGACATCTTGGGTCT
CGAAGACATACCGACTACGGGTAGCGGTGACTTCAAAGCCATTGTCGGAC
CTACCGTTATCACGTCACTTGCCGGTAATGTGGAGCGGCTGAGCCACCTA
ACGCCGGTCTTCAAGCCCGGGTGTGACGAGGTGAAAATAAATACGACATT
GATGTACACGCAGATAGTTTTCATTTATTATTCCGTCTCTCCTCACGCTT
TGGATTGAAGTGTTCATCGCTTGGCACACGCTTTCACAACGCTGCCATAG
AGGGGATTGGCACACTGACACATTCGTTGTCGCCATGGACTCAAAATGAC
ACGAGCACAACGACAACGGGAAGGAGCCGTGCGTCAAGTCTACCCGAACA
CCTAAAAACGCAACACCCGGAGCTATTGACACTGCTGCTATTGATACTGT
AGGTGGATTGTTTTGCTCGCTTATTTTGATCGCGTGCTTTACCAACACCA
TTTTCGTTCATAGGTAACCGGTGACGTAGTGTGGTCGAACGAGGAGGCTG
ACAAATTTCCGTGGAATTTTAAGGACTTCCTGGAAAAACAAGCGAGCGGG
CGTATCACGGCCCGACTGTGTAGCGTCCCCACCGGCGTGACATTTCCTCA
GCCCAATGGCACCGTGTATCTGGGTTGGGAGGGCACCGATGTGAAGTGGT
TCTGGAGCGCTGGGGAGCCGGAGTTTAGCGCAAACTGGGTAGTCACCAAG
GTAAGCGTACAAACGTACCCGCTTTCTCATATCAATTTGGCGCACTACAC
TTCGTAACGACAACGACACCTTGTCGCGCGCACTCTAAATGTCGCTGTAA
GCCCCAGACGCTTTACAGCATATTGTCACAAGAAACACGTGAGCACACGC
CGTTACAACTCCCCACTGTCCAATGATCTTCGTTTACTGTTCCAGTTACT
GGTTGAGTTGTCATCCTTTTCGGACAAATTATTTCTGTTTTTTTCCACGG
AAGAAGCCGTCTATGCAGCATGATTGCGAGTACCCTTTCCCCCCCATGCA
CGTGACTAAACAAAGCACAGCAAACTGCCCCATATTTTTGCTCCGAAGAA
CCGCGATGCTCTGAATTCCGCCGGGGAGTATTATTCGAGGTCTTTTCCTC
ATTGCTTTGACCGAAGAGGCTCTCCTGGAACAAATACATCAAGTCACTTT
ACCTTCTGCTCCACCACCCACTCATCCATATACAAATTTTCTCAGGAAGA
ATATGTCAACCCAAACCCGGAGACATACAGGATCACCTTTCTGACTTCGA
CAAAGGTGCCGCCGGAGCGTTCGCTCGCACAAGATCCGTCGACAGCGCAG
CTCATGTTCACTAAGGAAGGTGATCCTTGGTACCTACCGAACATATTCAA
CACAGACGTTGTCGCTGCGAAGGCCATCATTGCTCCAACCTTCGGATTCA
CCAGGCTCTTTGGGCAGTTTGTCCCTATATTCGAATCTACCGTTCCCACC
GAGCCCACGGGGTGCGTCTCTACCCTGACCGGGCCTGTAAAGCTCACCGT
AGCCCCTGGAATCTTCGGCTTCCCGTGGGTGTTCCAGTCGGGTTGTGATG
GGTACACTATCACGGCACTCGCGAGCGCTATACCCTCAGACGTCAAGTTC
CCGGAAGGTGGCAAGTTGTACCTAGTGTGGAACCTCGCTAACACGGTTCA
ATGGCAGTGGTGTGTAGATGAGGTCCCCTCCAACGTCATCTGGACTATAG
AGAAATTCTCCAGGACTCAACCCGAAAATTCCAAGTAAAACGACTGTGCC
GAGTTGATGAACCTACtattaaTAGCAGGAGTTAAGTGGGCACGGACACG
GGCGGGGTCAACACGGCCGATTCTCATCTCTAAAGCAGGGGAGCGGGAGC
GTAAAATAGACTAGTGACATAGAGTGGCTTCCATGTCATCTCTAGCAATG
CATTTGAAAGGAGGAAGGAAACGTTGCTACAAATAAGTAACGTTTTCAAC
GTTTTGTACGCTGCAACACGTGATGCACATGAGTAAGAGGCGGCCATGGT
AGATGCCTTGAGAGAGAAAATACGTGTTGTGTTTTTGCATGTTGGGACCC
GTTGTACAGCTTCTAACCTTGTCGGGCCCTCGTTATAGAGTAATTAAATG
TCGCTCGCGTGAAGGGTGCTCATGGTCATACAGATATGCTTTGAAGTAAT
TCGTGCGAATAAATCTTTGACTTTGTGTTGGTTTCAAGGACACCTCTCCA
TACAAAAAGCATGCCCCCTCCGTTCTCCAATCACATTACTCTTTGGTTTC
TCTTTGGCTTCCACCTGTTATTGTATTGTTTGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig872:85906..88538+

>mRNA_A-nodosum_M_contig872.6.1 ID=mRNA_A-nodosum_M_contig872.6.1|Name=mRNA_A-nodosum_M_contig872.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at A-nodosum_M_contig872:85906..88538+ (Ascophyllum nodosum dioecious)
ATGCAAGCGGTCAGGATCACCACCATAACAAGGCAGGCGGCAGCCCATCT
TACGCAAGAGGGGAAGAAGGCTATCCTCGCCGTGGAGAGTGACATCTTGG
GTCTCGAAGACATACCGACTACGGGTAGCGGTGACTTCAAAGCCATTGTC
GGACCTACCGTTATCACGTCACTTGCCGGTAATGTGGAGCGGCTGAGCCA
CCTAACGCCGGTCTTCAAGCCCGGGTGTGACGAGGTAACCGGTGACGTAG
TGTGGTCGAACGAGGAGGCTGACAAATTTCCGTGGAATTTTAAGGACTTC
CTGGAAAAACAAGCGAGCGGGCGTATCACGGCCCGACTGTGTAGCGTCCC
CACCGGCGTGACATTTCCTCAGCCCAATGGCACCGTGTATCTGGGTTGGG
AGGGCACCGATGTGAAGTGGTTCTGGAGCGCTGGGGAGCCGGAGTTTAGC
GCAAACTGGGTAGTCACCAAGGAAGAATATGTCAACCCAAACCCGGAGAC
ATACAGGATCACCTTTCTGACTTCGACAAAGGTGCCGCCGGAGCGTTCGC
TCGCACAAGATCCGTCGACAGCGCAGCTCATGTTCACTAAGGAAGGTGAT
CCTTGGTACCTACCGAACATATTCAACACAGACGTTGTCGCTGCGAAGGC
CATCATTGCTCCAACCTTCGGATTCACCAGGCTCTTTGGGCAGTTTGTCC
CTATATTCGAATCTACCGTTCCCACCGAGCCCACGGGGTGCGTCTCTACC
CTGACCGGGCCTGTAAAGCTCACCGTAGCCCCTGGAATCTTCGGCTTCCC
GTGGGTGTTCCAGTCGGGTTGTGATGGGTACACTATCACGGCACTCGCGA
GCGCTATACCCTCAGACGTCAAGTTCCCGGAAGGTGGCAAGTTGTACCTA
GTGTGGAACCTCGCTAACACGGTTCAATGGCAGTGGTGTGTAGATGAGGT
CCCCTCCAACGTCATCTGGACTATAGAGAAATTCTCCAGGACTCAACCCG
AAAATTCCAAGTAA
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