mRNA_A-nodosum_M_contig871.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig871.5.1
Unique NamemRNA_A-nodosum_M_contig871.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig871.5.1 vs. uniprot
Match: A0A6S7JBU2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBU2_PARCT)

HSP 1 Score: 79.3 bits (194), Expect = 4.000e-17
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   13 YTCDRCKRDKKQVKSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRV 165
            Y C RCKRDKK  K FS+ NDMDPG VP+QL+GLTQ EEMLI++ CP+MRV
Sbjct:   35 YICYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRV 85
[Close]
BLAST of mRNA_A-nodosum_M_contig871.5.1 vs. uniprot
Match: A0A6S7G3B5_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G3B5_PARCT)

HSP 1 Score: 80.5 bits (197), Expect = 9.140e-17
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   13 YTCDRCKRDKKQVKSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRV 165
            Y C RCKRDKK  K FS+ NDMDPG+VP+QL+GLTQ EEMLI++ CP+MRV
Sbjct:  161 YICYRCKRDKKSPKKFSAENDMDPGTVPEQLRGLTQVEEMLISRVCPIMRV 211
[Close]
BLAST of mRNA_A-nodosum_M_contig871.5.1 vs. uniprot
Match: A0A6S7JXT5_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JXT5_PARCT)

HSP 1 Score: 79.3 bits (194), Expect = 5.040e-16
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   13 YTCDRCKRDKKQVKSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRV 165
            Y C RCKRDKK  K FS+ NDMDPG VP+QL+GLTQ EEMLI++ CP+MRV
Sbjct:  146 YICYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRV 196
[Close]
BLAST of mRNA_A-nodosum_M_contig871.5.1 vs. uniprot
Match: A0A7D9LMQ1_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LMQ1_PARCT)

HSP 1 Score: 79.3 bits (194), Expect = 5.130e-16
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   13 YTCDRCKRDKKQVKSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRV 165
            Y C RCKRDKK  K FS+ NDMDPG VP+QL+GLTQ EEMLI++ CP+MRV
Sbjct:  135 YICYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRV 185
[Close]
BLAST of mRNA_A-nodosum_M_contig871.5.1 vs. uniprot
Match: A0A7D9LNP2_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LNP2_PARCT)

HSP 1 Score: 79.3 bits (194), Expect = 6.130e-16
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   13 YTCDRCKRDKKQVKSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRV 165
            Y C RCKRDKK  K FS+ NDMDPG VP+QL+GLTQ EEMLI++ CP+MRV
Sbjct:  303 YICYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRV 353
[Close]
BLAST of mRNA_A-nodosum_M_contig871.5.1 vs. uniprot
Match: A0A6S7GE38_PARCT (Helitron_like_N domain-containing protein n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GE38_PARCT)

HSP 1 Score: 79.3 bits (194), Expect = 6.140e-16
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   13 YTCDRCKRDKKQVKSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRV 165
            Y C RCKRDKK  K FS+ NDMDPG VP+QL+GLTQ EEMLI++ CP+MRV
Sbjct:  146 YICYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRV 196
[Close]
BLAST of mRNA_A-nodosum_M_contig871.5.1 vs. uniprot
Match: A0A7D9IBF1_PARCT (Helitron_like_N domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IBF1_PARCT)

HSP 1 Score: 79.3 bits (194), Expect = 6.150e-16
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   13 YTCDRCKRDKKQVKSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRV 165
            Y C RCKRDKK  K FS+ NDMDPG VP+QL+GLTQ EEMLI++ CP+MRV
Sbjct:  148 YICYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRV 198
[Close]
BLAST of mRNA_A-nodosum_M_contig871.5.1 vs. uniprot
Match: A0A6S7G7B4_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G7B4_PARCT)

HSP 1 Score: 79.3 bits (194), Expect = 6.160e-16
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   13 YTCDRCKRDKKQVKSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRV 165
            Y C RCKRDKK  K FS+ NDMDPG VP+QL+GLTQ EEMLI++ CP+MRV
Sbjct:   92 YICYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRV 142
[Close]
BLAST of mRNA_A-nodosum_M_contig871.5.1 vs. uniprot
Match: A0A6S7I194_PARCT (ATP-dependent DNA helicase n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I194_PARCT)

HSP 1 Score: 79.3 bits (194), Expect = 6.160e-16
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   13 YTCDRCKRDKKQVKSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRV 165
            Y C RCKRDKK  K FS+ NDMDPG VP+QL+GLTQ EEMLI++ CP+MRV
Sbjct:  300 YICYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRV 350
[Close]
BLAST of mRNA_A-nodosum_M_contig871.5.1 vs. uniprot
Match: A0A7D9ETB4_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9ETB4_PARCT)

HSP 1 Score: 77.4 bits (189), Expect = 1.200e-15
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   13 YTCDRCKRDKKQVKSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRV 165
            Y C RCK+DKK  K FS+ NDMDPG VP+QL GLTQ EEMLI++ CP+MRV
Sbjct:  111 YLCYRCKKDKKSPKKFSAENDMDPGIVPEQLSGLTQVEEMLISRVCPIMRV 161
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig871.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S7JBU2_PARCT4.000e-1770.59Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A6S7G3B5_PARCT9.140e-1770.59Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A6S7JXT5_PARCT5.040e-1670.59Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
A0A7D9LMQ1_PARCT5.130e-1670.59Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
A0A7D9LNP2_PARCT6.130e-1670.59Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
A0A6S7GE38_PARCT6.140e-1670.59Helitron_like_N domain-containing protein n=3 Tax=... [more]
A0A7D9IBF1_PARCT6.150e-1670.59Helitron_like_N domain-containing protein (Fragmen... [more]
A0A6S7G7B4_PARCT6.160e-1670.59ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
A0A6S7I194_PARCT6.160e-1670.59ATP-dependent DNA helicase n=3 Tax=Paramuricea cla... [more]
A0A7D9ETB4_PARCT1.200e-1568.63Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig871contigA-nodosum_M_contig871:223424..223589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15700047
PFAMsHelitron_like_N
Model size166
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.33e-10
EggNOG OGs2CC8B@1|root,2S3BW@2759|Eukaryota,3A3QP@33154|Opisthokonta,3C1YH@33208|Metazoa
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870268.659535-CDS-A-nodosum_M_contig871:223424..2235891680870268.659535-CDS-A-nodosum_M_contig871:223424..223589Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig871 223425..223589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig871.5.1prot_A-nodosum_M_contig871.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig871 223425..223589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig871.5.1

>prot_A-nodosum_M_contig871.5.1 ID=prot_A-nodosum_M_contig871.5.1|Name=mRNA_A-nodosum_M_contig871.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=55bp
AEGQYTCDRCKRDKKQVKSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGC
PVMRV
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mRNA from alignment at A-nodosum_M_contig871:223424..223589-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig871.5.1 ID=mRNA_A-nodosum_M_contig871.5.1|Name=mRNA_A-nodosum_M_contig871.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=166bp|location=Sequence derived from alignment at A-nodosum_M_contig871:223424..223589- (Ascophyllum nodosum dioecious)
GCTGAAGGACAATACACGTGCGATCGCTGCAAGCGCGACAAAAAGCAGGT
TAAGTCTTTCTCTTCTGCCAACGACATGGATCCTGGATCTGTGCCGGACC
AACTGAAGGGTCTCACTCAGGCGGAGGAGATGCTCATCGCCAAAGGCTGT
CCTGTCATGCGTGTCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig871:223424..223589-

>mRNA_A-nodosum_M_contig871.5.1 ID=mRNA_A-nodosum_M_contig871.5.1|Name=mRNA_A-nodosum_M_contig871.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=165bp|location=Sequence derived from alignment at A-nodosum_M_contig871:223424..223589- (Ascophyllum nodosum dioecious)
GCTGAAGGACAATACACGTGCGATCGCTGCAAGCGCGACAAAAAGCAGGT
TAAGTCTTTCTCTTCTGCCAACGACATGGATCCTGGATCTGTGCCGGACC
AACTGAAGGGTCTCACTCAGGCGGAGGAGATGCTCATCGCCAAAGGCTGT
CCTGTCATGCGTGTC
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