mRNA_A-nodosum_M_contig8706.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8706.3.1
Unique NamemRNA_A-nodosum_M_contig8706.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8706.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8706contigA-nodosum_M_contig8706:14316..17104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size261
Hectar predicted targeting categoryother localisation
Exons3
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870268.158339-CDS-A-nodosum_M_contig8706:14315..144371680870268.158339-CDS-A-nodosum_M_contig8706:14315..14437Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8706 14316..14437 -
1680870268.1735432-CDS-A-nodosum_M_contig8706:14639..147231680870268.1735432-CDS-A-nodosum_M_contig8706:14639..14723Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8706 14640..14723 -
1680870268.1849344-CDS-A-nodosum_M_contig8706:17049..171041680870268.1849344-CDS-A-nodosum_M_contig8706:17049..17104Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8706 17050..17104 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8706.3.1prot_A-nodosum_M_contig8706.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8706 14316..17104 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8706.3.1

>prot_A-nodosum_M_contig8706.3.1 ID=prot_A-nodosum_M_contig8706.3.1|Name=mRNA_A-nodosum_M_contig8706.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=87bp
MRSCQGAPSNVHVTFGIKDEILQLPAHKVKRSAAFCSRHPISHDSEWASQ
PDSGEKLHAQELPAFFHLESTNFVVKSTVGVLSLSML
back to top

mRNA from alignment at A-nodosum_M_contig8706:14316..17104-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8706.3.1 ID=mRNA_A-nodosum_M_contig8706.3.1|Name=mRNA_A-nodosum_M_contig8706.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2789bp|location=Sequence derived from alignment at A-nodosum_M_contig8706:14316..17104- (Ascophyllum nodosum dioecious)
ATGAGGAGTTGTCAAGGAGCGCCTTCGAACGTGCATGTTACATTTGGAAT
CAAAGGTGAGAGGCAGGGCTGATATTAATACTGTATACAGCAGTCCAGCA
GTAGTACTACCACTACTGTTGTTTTTGTCATCTGTCATTTTCAACAAACA
CTGCTGTGGTACGGTCGTAGTAATACCCGTAGGTAGTTCTACGTTCGTTG
GGCTATTTTCGTACGAGTAGTGCACAGCTATACGAATTAGGGATGACGCG
GGACGGGAAGGCCGAACCTGTCTCGCGAGATGAAATTCTCAGGCGGGTAC
GGGAACAGGGAAGCATGTCTTTTCCCCGTTAAGTTGACCACGTCACGAGC
AGGATTGGCAACCCTAGGCCCTGTCATTACGAAGCGATATAATCTGTCCA
TAGATTCCGTCCAGAGAATCTGTCGAGAGCACAGACAGCTCTGTGATTGG
CCAAATGGAGCTCGACACTATTAGTTAGAAAGTTCTGTCCACCGACGGAT
TCTGTCGATGGACGGATAATTGTTTCGAGAATCTGTCCACTCTCTGATCA
GAGGTTTTCTCTTTTCGTAATAAGTATATTGAGGGGGATCAATGCGAGTG
GCATATAATGACTAGGATGACAGGGCCGGATTGCGCAGTCACGTGCAATT
TAATAAATACACACACACAGGGACGTGCAAGGTACCGGAAATAGTACAAC
TGATGCCAAAACAAAAACAAAAAACACCAGCTGTTAGATACTGAAAACAG
TACAACTGATACCAATTAGACAAAAGACAACAACAGCTACTGCGTACTGG
ACATAGGGAGTATAACTACCCGAGTAGCTGTTTTTCTTGTTTGTTTCTTA
ATGGGCTTTCATAAATCGTTTGAGGAGCTAAAGCTTTTTGAAACGCAAAG
AACGCTCTGGTGCCTCCGTGTATGCCCTACTTTGGTACTACAGTAGTTTA
AAGAAAAATCTGAACGCGTCTAGACCTTCTGAGCATCCCCCAGTCAGGGG
GAAAAATATCACAGTTGCAGTCTGTTGACAGTCACGGTTTATGATTGTAT
GTAATTAAAACTACTGGTCATGACATATAGCAAGGGTAAGGATCAACCGG
GTTAGTCTAGGTTGCCAATCCTGCTGGTGGTCAGCTGAGCAGGGAAAGTG
AATTATTTCCTGTCCCCGTTCGAGCCTACAACTTTGGTCTCGCGAGACAG
GTTCGGCAGTGCCGCTCCGCATCAGTCTGCTCATCTCCATAGTCAGGCTG
AATCTGGTGCTTACTTTTACGGAATTCTTCCCGAGTTCCGCGGCGGCGTC
CAATTATATTTATTTAAATTAAACGGCCATACGCCATCGAGTCAGTCCCG
AGTTTACCGGGTCACGAAATTGCTTACCGATGGCGTTCACTGCCGAGAGT
CCGCCGGCACAGGGCCAATAATCCTCAAGGTAGTTCCGAAGAGTGTTGCC
TTGGCAGGTCACCACGGACCAATTAATATGCGTCTCTCTTTCCCTACACC
CACTATTGGTATGAATAAAGTGGTGTATAAAATTGTATCAGTAGTAGCAA
ATACTGTACCAGCACTATACTTGGTATGCTTCCTCGTCCTAGTTTACGCA
CCGTTAATTACACTGAGCTATACCGTGGCGCTACTATTTATAGACCTATT
ATAGTAAGAGAACCATCTATTATTAGAGAAAACCTCCGTCGGGGTAGCGA
TAATTGCGAGGGAACGAAACAAGTTCTCCACACTCTCTTAAGGACGGCGT
TGCCTCCTTGTTTGATACTGAAAAACATTAACGCATTGTTAGAGTAATTA
TGTTCTATGATATCTTGACCATAACTAGAAATATAAAAAAAGGAGGAAAA
GAGTTCCCTGAAAAGAGAACCCGCCAAACAATAAAATAATGTTGGGAGTA
AAATATTTTTCGAATAATTTGCAGCAGCCCAACTATCAGAGAAAATTCCA
CAGGTGAATGGGAAACATGTACCTAGAGGCGGCGCCCAAGATATTAAAAA
TGGCATAGAAATGAGACTAGGAGCCGATCAGAGCGTGCTGTAGTGACTCG
AAATGGCGGATTGAAAGTGCAACAGCATATAAATTATACTTCGTACGTAT
GTATTGTTTCTACTCTCCTCGGGCTTTGACGACTGCAGTATATATTTTTC
TGGACGTGGCATGAAATGACGAGACTGAATCAAAACTCGCCATCTCCAAC
TTTTACCGCGGACTCAATAATGGTAACAATGTATGTATGGCTTCCTTCTC
TCGTTTCGTATACGGGCATTGGTTCCTCTAACAGGTTGAGCGCCTACAGC
CAACACGTGAATTCTGACTGGTCCCTATTGTTTACTTGATGCTGCGCCTT
ATGCGACGAACGCTCTCTCCCCCCCCAACAGACGAAATCCTACAACTTCC
GGCACACAAAGTGAAACGATCTGCAGCTTTTTGCTCAAGGCATCCTATTT
CCCATGACAGTGAGTGTCTGGTTGTGTTTATGTGATGTGTCTCTCTGCTG
GGTTGTAGAGTTGGTGCGTGGTTTCCACAACACAAGAAAACATATGTTGA
GTTCCCGCTCGTGCGAGGGTTTTCACGTTCCCAGGAACTTAAATGCCCAG
AAAAGATTCAATAACTCGATGAGCTTACACCAGATTGCGGATTATCCTTC
ATCATTTTCCGATACAGGGGCAAGTCAGCCAGACTCGGGAGAAAAGCTCC
ACGCTCAAGAGCTGCCAGCATTCTTTCACCTGGAAAGCACCAACTTCGTG
GTTAAGTCTACCGTCGGCGTCTTGTCCTTGAGCATGCTG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig8706:14316..17104-

>mRNA_A-nodosum_M_contig8706.3.1 ID=mRNA_A-nodosum_M_contig8706.3.1|Name=mRNA_A-nodosum_M_contig8706.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=261bp|location=Sequence derived from alignment at A-nodosum_M_contig8706:14316..17104- (Ascophyllum nodosum dioecious)
ATGAGGAGTTGTCAAGGAGCGCCTTCGAACGTGCATGTTACATTTGGAAT
CAAAGACGAAATCCTACAACTTCCGGCACACAAAGTGAAACGATCTGCAG
CTTTTTGCTCAAGGCATCCTATTTCCCATGACAGTGAGTGGGCAAGTCAG
CCAGACTCGGGAGAAAAGCTCCACGCTCAAGAGCTGCCAGCATTCTTTCA
CCTGGAAAGCACCAACTTCGTGGTTAAGTCTACCGTCGGCGTCTTGTCCT
TGAGCATGCTG
back to top