mRNA_A-nodosum_M_contig870.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig870.8.1
Unique NamemRNA_A-nodosum_M_contig870.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig870.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig870contigA-nodosum_M_contig870:78790..79278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo133508
PFAMsRVT_2,Retrotran_gag_2,rve
Model size489
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.5e-06
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size489
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870267.4775412-CDS-A-nodosum_M_contig870:78789..792781680870267.4775412-CDS-A-nodosum_M_contig870:78789..79278Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig870 78790..79278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig870.8.1prot_A-nodosum_M_contig870.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig870 78790..79278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig870.8.1

>prot_A-nodosum_M_contig870.8.1 ID=prot_A-nodosum_M_contig870.8.1|Name=mRNA_A-nodosum_M_contig870.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=163bp
FRQQPDGQAAWRATGKKYLNSSMQRRSILMRKLNGMTMTPNQDPDESLAQ
VFQQRDELEHIGETFTKARMLDIILEGLSDEYESIRFAAERDPEISLEEI
KITMRNMYANRVARGDGSTFSREKERQSAMTAALGFKGSCDYCSKPGHKH
TECLQFLRESGGG
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mRNA from alignment at A-nodosum_M_contig870:78790..79278-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig870.8.1 ID=mRNA_A-nodosum_M_contig870.8.1|Name=mRNA_A-nodosum_M_contig870.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=489bp|location=Sequence derived from alignment at A-nodosum_M_contig870:78790..79278- (Ascophyllum nodosum dioecious)
TTCAGGCAACAGCCGGACGGGCAGGCGGCGTGGAGAGCAACGGGCAAAAA
ATACCTCAACTCTTCAATGCAGCGGCGGAGTATTCTGATGCGCAAACTAA
ACGGCATGACCATGACGCCAAACCAAGACCCCGATGAATCCCTTGCTCAG
GTTTTTCAGCAGCGGGATGAGCTCGAGCACATCGGTGAGACTTTTACAAA
GGCGCGCATGTTGGATATAATCCTAGAGGGTCTAAGCGACGAGTACGAGT
CCATCCGATTCGCAGCCGAGCGGGACCCTGAGATCTCGCTTGAAGAAATT
AAAATTACGATGCGAAACATGTACGCCAACCGCGTCGCGCGCGGTGACGG
CTCAACGTTTTCGCGCGAGAAGGAACGCCAGTCAGCTATGACGGCGGCTT
TGGGATTTAAGGGAAGCTGTGATTACTGCAGTAAGCCTGGCCACAAACAT
ACCGAGTGTTTACAATTTCTTCGCGAGTCTGGCGGGGGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig870:78790..79278-

>mRNA_A-nodosum_M_contig870.8.1 ID=mRNA_A-nodosum_M_contig870.8.1|Name=mRNA_A-nodosum_M_contig870.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=489bp|location=Sequence derived from alignment at A-nodosum_M_contig870:78790..79278- (Ascophyllum nodosum dioecious)
TTCAGGCAACAGCCGGACGGGCAGGCGGCGTGGAGAGCAACGGGCAAAAA
ATACCTCAACTCTTCAATGCAGCGGCGGAGTATTCTGATGCGCAAACTAA
ACGGCATGACCATGACGCCAAACCAAGACCCCGATGAATCCCTTGCTCAG
GTTTTTCAGCAGCGGGATGAGCTCGAGCACATCGGTGAGACTTTTACAAA
GGCGCGCATGTTGGATATAATCCTAGAGGGTCTAAGCGACGAGTACGAGT
CCATCCGATTCGCAGCCGAGCGGGACCCTGAGATCTCGCTTGAAGAAATT
AAAATTACGATGCGAAACATGTACGCCAACCGCGTCGCGCGCGGTGACGG
CTCAACGTTTTCGCGCGAGAAGGAACGCCAGTCAGCTATGACGGCGGCTT
TGGGATTTAAGGGAAGCTGTGATTACTGCAGTAAGCCTGGCCACAAACAT
ACCGAGTGTTTACAATTTCTTCGCGAGTCTGGCGGGGGA
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