mRNA_A-nodosum_M_contig870.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig870.1.1
Unique NamemRNA_A-nodosum_M_contig870.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig870.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig870contigA-nodosum_M_contig870:9490..14972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1432
Hectar predicted targeting categoryother localisation
Exons8
Cds size993
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig870.1.1prot_A-nodosum_M_contig870.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig870 10206..14818 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870266.4266686-UTR-A-nodosum_M_contig870:9489..96631680870266.4266686-UTR-A-nodosum_M_contig870:9489..9663Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig870 9490..9663 +
1680870266.4419587-UTR-A-nodosum_M_contig870:10094..102051680870266.4419587-UTR-A-nodosum_M_contig870:10094..10205Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig870 10095..10205 +
1680870266.5488524-UTR-A-nodosum_M_contig870:14818..149721680870266.5488524-UTR-A-nodosum_M_contig870:14818..14972Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig870 14819..14972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870266.4522796-CDS-A-nodosum_M_contig870:10205..102621680870266.4522796-CDS-A-nodosum_M_contig870:10205..10262Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig870 10206..10262 +
1680870266.4723592-CDS-A-nodosum_M_contig870:10884..110931680870266.4723592-CDS-A-nodosum_M_contig870:10884..11093Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig870 10885..11093 +
1680870266.4833791-CDS-A-nodosum_M_contig870:11445..115471680870266.4833791-CDS-A-nodosum_M_contig870:11445..11547Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig870 11446..11547 +
1680870266.4932618-CDS-A-nodosum_M_contig870:11992..120431680870266.4932618-CDS-A-nodosum_M_contig870:11992..12043Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig870 11993..12043 +
1680870266.5068076-CDS-A-nodosum_M_contig870:13099..133081680870266.5068076-CDS-A-nodosum_M_contig870:13099..13308Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig870 13100..13308 +
1680870266.5165708-CDS-A-nodosum_M_contig870:13869..140671680870266.5165708-CDS-A-nodosum_M_contig870:13869..14067Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig870 13870..14067 +
1680870266.5297613-CDS-A-nodosum_M_contig870:14651..148181680870266.5297613-CDS-A-nodosum_M_contig870:14651..14818Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig870 14652..14818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig870.1.1

>prot_A-nodosum_M_contig870.1.1 ID=prot_A-nodosum_M_contig870.1.1|Name=mRNA_A-nodosum_M_contig870.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=331bp
MDLAMHVAINCINTVAENQVKLLMGEDLFRWMLFQCHALNESGAYVTFRW
RELDSGWFCIQNLVVLGKELIDSSNRRAKPTVVTEPYSGFGHIHSRLHEE
AIRVRADMFKAIAEESVVDVPSRVLEVLTVADKRVERDERTLHVICKLET
FTANKGSVSRKSKMVRVKIGRPLKKFEMTLRLSATTNCPVLEMMASRRDS
ATGSEPATAAIDGGASNRIIEVLSVLGAMEKTIPREVVRHTKKTGYMRVD
SLWRSISRRVNGTTTGSMGLHVTKTSVEHDSGDRGTFSVYRATPAILLGK
SWYNARTLAELGESLEMPTNVRYLMLQPYY*
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mRNA from alignment at A-nodosum_M_contig870:9490..14972+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig870.1.1 ID=mRNA_A-nodosum_M_contig870.1.1|Name=mRNA_A-nodosum_M_contig870.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5483bp|location=Sequence derived from alignment at A-nodosum_M_contig870:9490..14972+ (Ascophyllum nodosum dioecious)
CGCACGGTCGTGCAGGCAGAGTGGAGGACTCGTCCGAGTCGCTGCCTGGT
GGTGCCCTCCACAACGCTGATAGACTTAGTGCAGCTGAAGGACAGGACGC
TATCCCTCGGCAAGCGAGACGACTCCGCGAAGAGACGGATCGTCGAGCTG
ACGTTCCGATCCGTCCCCACGCAGGTGCTAGCAAAAACaAAAGCAAAAGC
GTCAAAAGAATGGACTTCGCTCTCTCGCCCGCTCGCGAACAAATACATCT
CGTTCAATAGCGGGGCAACGGCAGGCAGTCGAACTTCCCTAGTCGTTCGA
TCGCCCCCCCCCCTCTCTcCCCCCGCGCGTGCACGCTGCGATATACTCGT
GCTAGTTGGTGTGCTCTGAGAGAGTGCTTCGGGTACGCGAACAAAAATGA
TGTACTTCATCTTTCTCTCAGGAGCGAGCATTTCCTCACCGACTCTGAGC
TCGAACTCTTGTTTTGTGCGTACAGTCACAACCTCACCGCTGGCAAATGA
CCTTAAAGCATTGTCTGGGTGTGGTCTTATCCTCGCCGCTAAAAAGACAT
CACCACCGCGTGGGCGCGACATTTGTTCCAACGCCCTcccccccccCCCC
TGCAGAAGCTGGTGGTGCCTTTTGCGTCCGGGCCATTCGCAGGCGCTCGC
GCCACTGGGATCGAACACGGCAGTAACGTTAGCTTCTTCCTCGACCCAAA
CGTTGGTGCCGTTGACATGGACCTCGCGATGCACGTCGCTATCAACTGCA
TCAACACCGTCGCAGAAAATCAGGCAAGCTACGCCAACATACCCAACTAT
CAGGTAGATGATAAGAGTCGTAACAGGGAAGACTCGTGGCGGGGCGTCGA
TGTTTGCATGGCGCGATATGCGCGGGCGGACTCTTCTGTGACGCTTCAAG
TCTTACTACCCATTTTTCGCCCTCGCGAGGTGTTTTAGCGAGCTCGAGGG
GAAAAAATTAAAAGTGGGGGGTTGCGGCGTAGATTCTGACTTGACACTTA
TTGTGCCCCTTATAGGGCCACTGTGACCCTCCCCCACCCCCAGCGATATT
ACCACCAAAGGACAATACTACTGTAGACTACCGTTCCTCTGTACTAAAGA
TTTTGTAGCCGCTGCGACGGCTTTTTGCGGTAGCCTTTCGTGCTCTGTTG
GCGTGCTAGCGGATGGTGAGATGAGGAGCGGGCTGGAGCTCTAGCGCTTA
CCCAAGATTGACAAACGAGGGTGGTGGCGAGCAGGCGACACTGAAAAATA
GACGCGCGCGCGTTGCTGTATGCTTACCGCAAGAGCTGCGTCCATGCGGA
CCTTTATGTATTACTGCACTCACTCCCCCAGGACAAACTATGCCGTTCCA
CCTAACCCATGGTGATCACCAACACGTGCCTTATCTCTACGCCAGGTGAA
GCTCCTCATGGGGGAAGATCTCTTCCGGTGGATGCTGTTTCAGTGCCACG
CGCTTAACGAAAGCGGCGCGTACGTCACTTTCCGCTGGCGTGAGCTCGAC
TCCGGCTGGTTCTGCATCCAAAACCTGGTGGTGCTGGGCAAGGAGCTTAT
CGATTCGTCGAATCGCCGCGCGAAACCAACGGTGGTCACCGAGCCCTACA
GCGGGTAAGTCGAGGATGTCCCGAGCTCGTGGGCAGCGAGAAGGGGCGCG
TACCAGGCGCTTTTGTGCATGTTTTGCGTTTTCTTGTGTGTTCGTCGCGG
CGCAACTCGGTCAGAACGAGGGGGAGATCGTGTACGGCTGTAAAAGGTTA
TACGATAGCCTCGGCTGCCTTATTTTTAGGAAACTGTTGCGCATCGCATT
GACATTACCCTTGCCCATCACCGTGGAGGTTTGTGAGATTTACAACTATT
CCCGCTCGCGCGTGTCCTTTTGTGAGTAGTGAGACGCCTTAGCCCGAGTT
TGACACGTCAAGCGTCCTGATTCGATCCTGCCCCCTCCTCCCTCGGCACG
CGTTAGCTTCGGGCATATCCACTCCAGACTCCACGAGGAAGCCATTCGAG
TTAGAGCAGACATGTTCAAGGCTATCGCCGAAGAATCCGTTGTCGATGTG
CCCTCGAGGTAAGATGTGAAATACTCTCACTCACGATCGAGTTCGACGGT
AAGAGCCGCATAGGAGAACGAATCTGCGACCACGTACCCTGCGTCTTGCT
GAATATAGGACCCGCAAGGTTTCTTTCGTGTACTAGTACAATGTACGTAT
CTCCTTTTCATTGCGATGGAAGCGGGCGTGGAATTAGCCATATCTACTTT
GAACCCTCCTTTCCGCGTATTTTATTTCGTGATCGACCTACATGAGCGAA
CGTACCCTCAGGGGGCGGGAGAGTGGCACACGAGGCACCAGTGTTCCTAT
TGCTGTTTTTGCTGTCGTGTATTCCCTCGCTTGACAATGCGCGAGATTTC
CCCCCCTCTTACGTTGCGGGAAAATCACAGCAGCTTTTTCTCGCCCAACC
TGGTGCCCCTGACCCGTTGACGCCGAACAAATCACTGCGGGTTCCTCGCG
CAGGGTCTTGGAGGTGTTGACCGTGGCCGACAAACGCGTAGAACGCGATG
AAAGGTGGGTCAAGTATGCAGGGCTCCCGCCCCTTTCGAAGAAGCTTCGC
CTAGAGGGGATACGTGAGTTTCGCTTGCATGTGGCGTTCACCTCGCTGTC
GTTGATCAGACCTCCGTCGGGGAGAGGGTGGCCGGTCGCCGTCACCCGTC
CGCATTGGCACTTGTATTGGGGGGTGGGGGGGGCAAGAAACGCGAAGCTA
GTCGCCCGCTATGCCCCACTCTTAACGGGATGATTGCCTCGATGGGTCAC
TTGTTTCCCCTCTCACGGTGTTCATGTATTCACTTTCCTGGGGCTCCGGC
GGCAAACGAAGCAAAATGGTGGCCTTTGTCTCGTGAAATATCCTTGTGTC
GAACCAAGTCCCCCCCCCCTCCCTACTACCGTACAGCTCGAAGTGCGTGC
GATGGAACATTGTCCTCTTGCGCGCATCTCACCGCTCTTTCTCGCCAGAT
CCATATCACCTTTGCACGTCGAACCTTGTACTCTATAATTGTACACTGAC
ACTTGTACTGTAATGTGGAAACCGAAGTTCTTCATTTTTTGCTTACTCTA
GGGTATATATTTTGCTGGGGAAGGGGACGTTCCGTCGGGGACCTGGTATT
TATTCTCACAGCGTGCATGACTACACTGCAGTATGCTTTTCCTCGCGACT
CTGATGGTAAGTTGACCCAAAGTAAACCTCCCAACGTTTTGGCGGTAGTC
TTTTCGTGCGCTCTGTAGGCACGCTTCGCTCGTACCCGTGTCCGTAGGCC
CCATCAAGCACTTTTACAACGTTTAATGTGTACATCACAACGCATCTTTC
GCTTTTTCGTCATTCGAGAATCGAGATACCTGAAACTTACCCCGAGCAAA
ATCAAAACTCGTGTTGCTCACGCCAGGAGCTTTTTTTTATTGGCATTCCC
TTGGTTCGTTACAGTTCAGGCTGCCCACCCACTCCCCTCTTTCCACGCGT
GACCACGCACGTACGTGGTTCCAGGATTTTTTTCTTAGTGTTATCGAGGT
CTGCTCACAATCCAGGCTATTCACCCCCCCGTCCCCGCCCCCCCCCTTCC
TTCCTTGAAGAACTTTGCACGTGATCTGCAAGCTGGAGACCTTCACGGCC
AACAAGGGCAGCGTTTCGCGCAAGAGCAAGATGGTTCGCGTGAAGATAGG
TCGCCCGCTGAAGAAGTTCGAGATGACCCTGCGACTTAGCGCCACGACGA
ACTGCCCGGTGCTGGAGATGATGGCCTCCAGGAGAGACAGTGCGACCGGG
AGCGAGCCCGCGACAGCAGGTATGGTATGCATGCCGGAGCTAAGGAGTAG
GGTAGGCATCGTTTGGCGTTAGGAGGGTGAGGGGGTGCCAGCAAAGTGCC
GCAAAAAACAACTTGTGCGATAGGTGTTTGGGCATTGGTCTAGGGCATAC
TTTGAGGGTGTTGGCATCCTGATCAGGGGTACCTCATCTTTTTGGCCGGT
ACGGTACTGTACTACAGAACGATTCCTGCCCAGCTAATACTGAGGATCAG
ACACGACCTTCTGAAACGAGGATGCTCCCGAATTCTCCCGCTTGCCTTTG
TCGGAACAAGTTGCACGACCAGGCAAGCATCTGACATAGTTCATTCGCAA
ACAAACGCAAGTACACTAATCCTGATATAAGCGTGTTTTTGACCCACCGC
CAACGACGACGCAAGAGAGGAACATAACCCTTATCTGATATATATTGGAC
CAGACGCAGCCCCCCCCTCACCCCCTCACCCTCTTTATATGTACTCACTT
CATCTTACAATCCTGAATTCGCATGGTTTGTGCGTTTTCGCGTGTTTTTG
GCCAACTTAAAATGTCGCTCATGCTAAAAGCGATCGACGGGGGGGCGAGC
AACCGCATCATCGAAGTACTTTCCGTGCTTGGGGCTATGGAGAAAACAAT
ACCGCGGGAGGTCGTACGGCATACCAAAAAGACTGGATATATGCGCGTGG
ACAGTCTCTGGCGGTCAATATCCCGCCGTGTGAACGGTACAACCACCGGA
AGCATGGGTCTGCACGTGACGAAGACATGTGAGAGCTTTCCCGGGGCTGA
GGCGAGGGCGCCTGGCATACATTCGTCGCGCGATTACTTTTACTTAAACG
GTGCTATGCAGCCACTGGACGTGGTGGCCCCTGTCCAGCAATATAACGCC
TGATGATAGCTAAACGCGGCAGGTCCATGCCGGACGATTCCGTAGTGTAA
CGATGGAAACCCCCGTAATAAACTTATCGGGAGTTCGAAGCCCCGGCGCT
GCGGCCTATGACAAGGCATTTCTCGATGTAGAGCTAGCTGTGTGGTATGA
TGACGCATGCGAGGGTGAGGAAAGGAAGAAAGAGTAGAGTCGGAATTGCA
ACGCGTGTGGTGATGCGACACAAAGTGCACGAGAAAGGGCTGGTTCCACC
GCTAAAAAGCTAGCTAAAACAACCTGCATGCCATATATGTCGCTTCCTAC
CTACAAAGTACATCACTACGGTAGAACCGGGGGGGGGGATTaaAAAGCGG
GGAGAAACGACTTAGTATACGTTCGGCCGGCCTCGCCGGCTCGTCATCCC
CCGTCGTATTAATCTCTTCGTTGCTTCTTTTTCTCTGCGTCTTCTTTGGT
GTCTTGCCCTAGCCGTTGAGCACGATTCGGGAGACCGTGGGACCTTCTCC
GTTTACCGAGCAACGCCCGCCATTCTTCTGGGAAAGAGCTGGTATAACGC
TAGGACTCTCGCGGAACTGGGGGAGAGCCTCGAGATGCCCACTAACGTGC
GGTACCTGATGCTGCAGCCCTATTACTAGAGCATAGGGGACAGGAAGCGC
TCCACGCGAAATATAATCGTAGTTTACCAGAGCAAGAAAAATCTCCGACG
GTTTTCAGGAAGCTGGCTGCAGCACGAGGTCTCACGCACTTTGGACGAAG
TGAACTTATTGTGTCAAGGTTCCTAAAGCAGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig870:9490..14972+

>mRNA_A-nodosum_M_contig870.1.1 ID=mRNA_A-nodosum_M_contig870.1.1|Name=mRNA_A-nodosum_M_contig870.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=993bp|location=Sequence derived from alignment at A-nodosum_M_contig870:9490..14972+ (Ascophyllum nodosum dioecious)
ATGGACCTCGCGATGCACGTCGCTATCAACTGCATCAACACCGTCGCAGA
AAATCAGGTGAAGCTCCTCATGGGGGAAGATCTCTTCCGGTGGATGCTGT
TTCAGTGCCACGCGCTTAACGAAAGCGGCGCGTACGTCACTTTCCGCTGG
CGTGAGCTCGACTCCGGCTGGTTCTGCATCCAAAACCTGGTGGTGCTGGG
CAAGGAGCTTATCGATTCGTCGAATCGCCGCGCGAAACCAACGGTGGTCA
CCGAGCCCTACAGCGGCTTCGGGCATATCCACTCCAGACTCCACGAGGAA
GCCATTCGAGTTAGAGCAGACATGTTCAAGGCTATCGCCGAAGAATCCGT
TGTCGATGTGCCCTCGAGGGTCTTGGAGGTGTTGACCGTGGCCGACAAAC
GCGTAGAACGCGATGAAAGAACTTTGCACGTGATCTGCAAGCTGGAGACC
TTCACGGCCAACAAGGGCAGCGTTTCGCGCAAGAGCAAGATGGTTCGCGT
GAAGATAGGTCGCCCGCTGAAGAAGTTCGAGATGACCCTGCGACTTAGCG
CCACGACGAACTGCCCGGTGCTGGAGATGATGGCCTCCAGGAGAGACAGT
GCGACCGGGAGCGAGCCCGCGACAGCAGCGATCGACGGGGGGGCGAGCAA
CCGCATCATCGAAGTACTTTCCGTGCTTGGGGCTATGGAGAAAACAATAC
CGCGGGAGGTCGTACGGCATACCAAAAAGACTGGATATATGCGCGTGGAC
AGTCTCTGGCGGTCAATATCCCGCCGTGTGAACGGTACAACCACCGGAAG
CATGGGTCTGCACGTGACGAAGACATCCGTTGAGCACGATTCGGGAGACC
GTGGGACCTTCTCCGTTTACCGAGCAACGCCCGCCATTCTTCTGGGAAAG
AGCTGGTATAACGCTAGGACTCTCGCGGAACTGGGGGAGAGCCTCGAGAT
GCCCACTAACGTGCGGTACCTGATGCTGCAGCCCTATTACTAG
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