mRNA_A-nodosum_M_contig869.22.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig869.22.1
Unique NamemRNA_A-nodosum_M_contig869.22.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig869.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig869contigA-nodosum_M_contig869:182956..183575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870258.7949507-CDS-A-nodosum_M_contig869:182956..1830341680870258.7949507-CDS-A-nodosum_M_contig869:182956..183034Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig869 182957..183034 -
1680870258.8056924-CDS-A-nodosum_M_contig869:183497..1835751680870258.8056924-CDS-A-nodosum_M_contig869:183497..183575Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig869 183498..183575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig869.22.1prot_A-nodosum_M_contig869.22.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig869 182957..183575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig869.22.1

>prot_A-nodosum_M_contig869.22.1 ID=prot_A-nodosum_M_contig869.22.1|Name=mRNA_A-nodosum_M_contig869.22.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp
PELDYLDIPIGTVDREDCARRIQETMSILGGYRTLSAGTPAPTTPAPMTP
PP
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mRNA from alignment at A-nodosum_M_contig869:182956..183575-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig869.22.1 ID=mRNA_A-nodosum_M_contig869.22.1|Name=mRNA_A-nodosum_M_contig869.22.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=620bp|location=Sequence derived from alignment at A-nodosum_M_contig869:182956..183575- (Ascophyllum nodosum dioecious)
CCAGAACTAGATTACTTGGACATCCCGATCGGGACCGTTGACAGAGAAGA
TTGTGCGAGACGCATCCAAGAAACCATGGTGAGTTACAATTTTCCGGGAG
AAGTAAAACGTACCACCCCAGCAAGGCTTAGGATTTTGCAGGGCTGCGTA
CATGTGAAGTAGGGTATAATCAACACATCCAGAGCAAGAGGCCACACTCG
TTGTGCTATCGCCGCTTCTGTGTATGTCGTACAATAAAATTCGATACGTG
AGCCACGTCCAGCCTATATCTAGCGTTATGCCAGGGAAAGACACCACCTC
GTGGATACTTTAAACCTTCACAGCGGTATCGTCCACATGTAGAGCTAGGG
CATACACTTGTTTGATGTAGAACCGTTCTGCTCGGCGTTAAAAGCTCATG
TTGCTGTGATGCCGGTTTAAAAATGCCAAGTGCACACTGTTCAGTGAATG
CAAGAAGGGTAGCAGCCAGCTGCGAAGACTAATATTGGAAGCAAAAGGAC
CCAATGTCAGTCATATCCATGCTGTATTTGTAATCGCGCAGAGCATATTG
GGGGGTTACCGGACACTTTCGGCTGGAACCCCTGCTCCTACGACCCCAGC
TCCCATGACCCCGCCTCCCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig869:182956..183575-

>mRNA_A-nodosum_M_contig869.22.1 ID=mRNA_A-nodosum_M_contig869.22.1|Name=mRNA_A-nodosum_M_contig869.22.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=156bp|location=Sequence derived from alignment at A-nodosum_M_contig869:182956..183575- (Ascophyllum nodosum dioecious)
CCAGAACTAGATTACTTGGACATCCCGATCGGGACCGTTGACAGAGAAGA
TTGTGCGAGACGCATCCAAGAAACCATGAGCATATTGGGGGGTTACCGGA
CACTTTCGGCTGGAACCCCTGCTCCTACGACCCCAGCTCCCATGACCCCG
CCTCCC
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