mRNA_A-nodosum_M_contig8689.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8689.4.1
Unique NamemRNA_A-nodosum_M_contig8689.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8689.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8689contigA-nodosum_M_contig8689:7615..8017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870257.437046-CDS-A-nodosum_M_contig8689:7614..76931680870257.437046-CDS-A-nodosum_M_contig8689:7614..7693Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8689 7615..7693 +
1680870257.454402-CDS-A-nodosum_M_contig8689:7935..80151680870257.454402-CDS-A-nodosum_M_contig8689:7935..8015Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8689 7936..8015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8689.4.1prot_A-nodosum_M_contig8689.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8689 7615..8015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8689.4.1

>prot_A-nodosum_M_contig8689.4.1 ID=prot_A-nodosum_M_contig8689.4.1|Name=mRNA_A-nodosum_M_contig8689.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=53bp
GSRRRLPRQRRGGQRAQPGPGQRVGSHSLRGQSERPGAEDGHDPAVGRDP
LQP
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mRNA from alignment at A-nodosum_M_contig8689:7615..8017+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8689.4.1 ID=mRNA_A-nodosum_M_contig8689.4.1|Name=mRNA_A-nodosum_M_contig8689.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=403bp|location=Sequence derived from alignment at A-nodosum_M_contig8689:7615..8017+ (Ascophyllum nodosum dioecious)
GGAAGCCGGCGACGCCTCCCACGCCAACGCCGCGGGGGACAACGAGCCCA
ACCTGGCCCTGGTCAACGAGTGGGGTCACGTGAGCCCCTCTTTCCTTCTT
TCATCGCGTACTAATCACATTATATTTGTGCACCAGCACACAAGTAGGAC
GTTACGGTTGGGGCACACAGTTCAGGAGAGATCGCGCAGGGTTTTAATTG
CTTCTTAAACATAATGGTTTAATTGAGACAGAAAAGCGCTAAATATTACG
GTATTCACCTTTTCTACCCCAAGGAACGAAAAACAAAAGCACACGCCGTT
TTCGACGAAAACGCTCCGCAGATTCCCTCCGAGGCCAGTCTGAGCGTCCG
GGTGCTGAAGATGGGCATGACCCTGCTGTTGGACGTGATCCTCTACAGCC
GGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8689:7615..8017+

>mRNA_A-nodosum_M_contig8689.4.1 ID=mRNA_A-nodosum_M_contig8689.4.1|Name=mRNA_A-nodosum_M_contig8689.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=159bp|location=Sequence derived from alignment at A-nodosum_M_contig8689:7615..8017+ (Ascophyllum nodosum dioecious)
GGAAGCCGGCGACGCCTCCCACGCCAACGCCGCGGGGGACAACGAGCCCA
ACCTGGCCCTGGTCAACGAGTGGGGTCACATTCCCTCCGAGGCCAGTCTG
AGCGTCCGGGTGCTGAAGATGGGCATGACCCTGCTGTTGGACGTGATCCT
CTACAGCCG
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