mRNA_A-nodosum_M_contig8689.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8689.1.1
Unique NamemRNA_A-nodosum_M_contig8689.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig8689.1.1 vs. uniprot
Match: D8LIA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA1_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.640e-24
Identity = 57/95 (60.00%), Postives = 70/95 (73.68%), Query Frame = 3 
Query:    3 PKAMSTLVDNVERFVGRMPPPSRH-W-------RKSHDSGGFVGLKSQVKTCYMHAVLQQLFMVPGLREEILSVRIPCRKLEDFPRELVGRRVSL 263
            PKAMS L+DNV+ FVGR+ P  RH W        K   SGGFVGLK+Q  TCYM+++LQQLFMVP LR+ IL  ++P R L+DFPRELVGRRV++
Sbjct: 1172 PKAMSALLDNVDVFVGRVLPSLRHRWGYECSFDAKRPQSGGFVGLKNQGCTCYMNSLLQQLFMVPALRKGILEAKLPRRNLQDFPRELVGRRVAV 1266
[Close]
BLAST of mRNA_A-nodosum_M_contig8689.1.1 vs. uniprot
Match: A0A6H5KKZ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ1_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.680e-23
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 3 
Query:    3 PKAMSTLVDNVERFVGRMPPPSRH-W-------RKSHDSGGFVGLKSQVKTCYMHAVLQQLFMVPGLREEILSVRIPCRKLEDFPRELVGRRVSL 263
            PKAMS L+DNV+ FVGR+ P  RH W        K   SGGFVGLK+Q  TCYM+++LQQLFMVP LR+ IL  ++P R L+DFP ELVGRRV++
Sbjct: 1976 PKAMSALLDNVDVFVGRVIPSLRHRWGYECSFDAKRPQSGGFVGLKNQGCTCYMNSLLQQLFMVPALRKCILEAKLPRRNLQDFPLELVGRRVAV 2070
[Close]
BLAST of mRNA_A-nodosum_M_contig8689.1.1 vs. uniprot
Match: F0WG64_9STRA (Predicted protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG64_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.410e-16
Identity = 49/94 (52.13%), Postives = 63/94 (67.02%), Query Frame = 2 
Query:  242 GRQARIAPAGRGSGAG---VLQVQRTFLHLRDGKLRSFDPVRLVDACTCLDLNFPVNEQNDASEFCDKLLDRVESGMKVAQLAIESEMEMARGK 514
            GR A +AP   G+ A    V Q+QRTF +LR+ ++R F+P  LVDAC CL+L F V +QNDASEFCDKLLDR+E+G+K   L  +   E   GK
Sbjct: 1815 GRYAILAPELTGTEATLEVVRQLQRTFCYLRNSEMRFFNPKALVDACKCLNLEFSVYQQNDASEFCDKLLDRLETGLKTTPLGPKCLQEALDGK 1908
[Close]
BLAST of mRNA_A-nodosum_M_contig8689.1.1 vs. uniprot
Match: A0A024GF76_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GF76_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.280e-16
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 2 
Query:  290 VLQVQRTFLHLRDGKLRSFDPVRLVDACTCLDLNFPVNEQNDASEFCDKLLDRVESGMKVAQLAIESEMEMARGK 514
            V Q+QRTF +LR+ ++R F+P  LVDAC CL+L F V +QNDASEFCDKLLDR+E+G+K   L  +   E   GK
Sbjct: 1856 VRQLQRTFCYLRNSEMRFFNPKALVDACKCLNLEFSVYQQNDASEFCDKLLDRLETGLKTTPLGPKCLQEALDGK 1930
[Close]
BLAST of mRNA_A-nodosum_M_contig8689.1.1 vs. uniprot
Match: K3X8D4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8D4_GLOUD)

HSP 1 Score: 84.3 bits (207), Expect = 1.490e-15
Identity = 38/57 (66.67%), Postives = 48/57 (84.21%), Query Frame = 2 
Query:  296 QVQRTFLHLRDGKLRSFDPVRLVDACTCLDLNFPVNEQNDASEFCDKLLDRVESGMK 466
            QVQRTF +LRD ++R F+P  LVD+C CL+L F V +QNDASEFCDKLLDR+E+G+K
Sbjct:  866 QVQRTFSYLRDSEMRYFNPKALVDSCKCLNLEFSVYQQNDASEFCDKLLDRLETGLK 922
[Close]
BLAST of mRNA_A-nodosum_M_contig8689.1.1 vs. uniprot
Match: A0A3R7FZP1_9STRA (USP domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FZP1_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.730e-15
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 2 
Query:  296 QVQRTFLHLRDGKLRSFDPVRLVDACTCLDLNFPVNEQNDASEFCDKLLDRVESGMK 466
            Q+QRTF +LRD ++R F+P   VD+CTCL+L F V +QNDA+EFCDKLLDR+E+G+K
Sbjct: 1113 QLQRTFCYLRDSEMRYFNPKAFVDSCTCLNLEFSVYQQNDATEFCDKLLDRLETGLK 1169
[Close]
BLAST of mRNA_A-nodosum_M_contig8689.1.1 vs. uniprot
Match: A0A662X9W0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9W0_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.770e-15
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 2 
Query:  296 QVQRTFLHLRDGKLRSFDPVRLVDACTCLDLNFPVNEQNDASEFCDKLLDRVESGMK 466
            Q+QRTF +LRD ++R F+P   VD+CTCL+L F V +QNDA+EFCDKLLDR+E+G+K
Sbjct: 1719 QLQRTFCYLRDSEMRYFNPKAFVDSCTCLNLEFSVYQQNDATEFCDKLLDRLETGLK 1775
[Close]
BLAST of mRNA_A-nodosum_M_contig8689.1.1 vs. uniprot
Match: A0A3F2RUL0_9STRA (USP domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RUL0_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.790e-15
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 2 
Query:  296 QVQRTFLHLRDGKLRSFDPVRLVDACTCLDLNFPVNEQNDASEFCDKLLDRVESGMK 466
            Q+QRTF +LRD ++R F+P   VD+CTCL+L F V +QNDA+EFCDKLLDR+E+G+K
Sbjct: 1118 QLQRTFCYLRDSEMRYFNPKAFVDSCTCLNLEFSVYQQNDATEFCDKLLDRLETGLK 1174
[Close]
BLAST of mRNA_A-nodosum_M_contig8689.1.1 vs. uniprot
Match: A0A3M6VMM8_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VMM8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.820e-15
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 2 
Query:  296 QVQRTFLHLRDGKLRSFDPVRLVDACTCLDLNFPVNEQNDASEFCDKLLDRVESGMK 466
            Q+QRTF +LRD ++R F+P   VD+CTCL+L F V +QNDA+EFCDKLLDR+E+G+K
Sbjct: 1568 QLQRTFCYLRDSEMRYFNPKAFVDSCTCLNLEFSVYQQNDATEFCDKLLDRLETGLK 1624
[Close]
BLAST of mRNA_A-nodosum_M_contig8689.1.1 vs. uniprot
Match: D0MTA4_PHYIT (Ubiquitin-specific protease, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MTA4_PHYIT)

HSP 1 Score: 83.2 bits (204), Expect = 3.820e-15
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 2 
Query:  296 QVQRTFLHLRDGKLRSFDPVRLVDACTCLDLNFPVNEQNDASEFCDKLLDRVESGMK 466
            Q+QRTF +LRD ++R F+P   VD+CTCL+L F V +QNDA+EFCDKLLDR+E+G+K
Sbjct: 1674 QLQRTFCYLRDSEMRYFNPKAFVDSCTCLNLEFSVYQQNDATEFCDKLLDRLETGLK 1730
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8689.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIA1_ECTSI1.640e-2460.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKZ1_9PHAE2.680e-2358.95Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
F0WG64_9STRA2.410e-1652.13Predicted protein putative n=1 Tax=Albugo laibachi... [more]
A0A024GF76_9STRA3.280e-1656.00Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
K3X8D4_GLOUD1.490e-1566.67Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3R7FZP1_9STRA3.730e-1563.16USP domain-containing protein n=2 Tax=Phytophthora... [more]
A0A662X9W0_9STRA3.770e-1563.16Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A0A3F2RUL0_9STRA3.790e-1563.16USP domain-containing protein n=2 Tax=Phytophthora... [more]
A0A3M6VMM8_9STRA3.820e-1563.16Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
D0MTA4_PHYIT3.820e-1563.16Ubiquitin-specific protease, putative n=2 Tax=Phyt... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8689contigA-nodosum_M_contig8689:1998..3287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIA1
PFAMsUCH
Model size570
Max annot lvl2759|Eukaryota
KEGG koko:K11840,ko:K11869
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.79e-24
EggNOG OGsCOG5077@1|root,KOG1866@2759|Eukaryota
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
Cds size372
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8689.1.1prot_A-nodosum_M_contig8689.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8689 2009..3100 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870257.4937115-UTR-A-nodosum_M_contig8689:1997..20081680870257.4937115-UTR-A-nodosum_M_contig8689:1997..2008Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8689 1998..2008 +
1680870258.3246727-UTR-A-nodosum_M_contig8689:3100..32871680870258.3246727-UTR-A-nodosum_M_contig8689:3100..3287Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8689 3101..3287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870257.5125995-CDS-A-nodosum_M_contig8689:2008..20291680870257.5125995-CDS-A-nodosum_M_contig8689:2008..2029Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8689 2009..2029 +
1680870258.287342-CDS-A-nodosum_M_contig8689:2376..25021680870258.287342-CDS-A-nodosum_M_contig8689:2376..2502Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8689 2377..2502 +
1680870258.30501-CDS-A-nodosum_M_contig8689:2866..29971680870258.30501-CDS-A-nodosum_M_contig8689:2866..2997Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8689 2867..2997 +
1680870258.3152366-CDS-A-nodosum_M_contig8689:3006..31001680870258.3152366-CDS-A-nodosum_M_contig8689:3006..3100Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8689 3007..3100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8689.1.1

>prot_A-nodosum_M_contig8689.1.1 ID=prot_A-nodosum_M_contig8689.1.1|Name=mRNA_A-nodosum_M_contig8689.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=124bp
MSTLVDNVERFVGRMPPPSRHWRKSHDSGGFVGLKSQVKTCYMHAVLQQL
FMVPGLREEILSVRIPCRKLEDFPRELVGRRVSLPQDEAAVQVCCRCRER
FFTCGTESFAPSTPFAWWTPAHA*
back to top

mRNA from alignment at A-nodosum_M_contig8689:1998..3287+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8689.1.1 ID=mRNA_A-nodosum_M_contig8689.1.1|Name=mRNA_A-nodosum_M_contig8689.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1290bp|location=Sequence derived from alignment at A-nodosum_M_contig8689:1998..3287+ (Ascophyllum nodosum dioecious)
GTCCGAAGGCCATGTCTACTCTGGTGGATAATGTGAGAAAAATAAAAATA
ACAGGAAAAAAGGGACGGACGGACGGATTGACGGATTTTGCTGCTGCTGG
CTGCTGCTGGTATGTTGTTGGTGCTCCAATGCTCCAGTGTTGTTGTTGCT
CCAGTGCTCCAGTTCGCCTTGGGTTGCCGCCGTTACCGACCGACTGTTAC
TAAGCGATCAATATTTTCCCCCCATCGGCGGAAGGTATGCCCCCCCCCCC
CCCCGCTTGATACCAGGGTAGGTTCTGAACCTCACCTCACCTCACCTCAC
ATCACCTCACCTCACATCACATCACCTCACCTCACATCACATCACCTCAC
ATCACCCGTGTTGTGTGTGTCGCCAAAAGGTTGAGAGATTCGTTGGGCGG
ATGCCCCCGCCGTCGAGGCACTGGCGGAAGAGTCACGACAGCGGAGGCTT
CGTCGGGCTGAAGAGTCAAGTCAAGACGTGCTACATGCACGCTGTTCTGC
AACAGGCAAGTATGTTTTTTTGCTTCTGTTCGGTTTTTTCTTTTGTTTTG
TTTTTTTTTGTTTTTGAGTATTATAGTTGTTTGTACCTCTCGAGAGCAGA
CGATAGATGTGCTGCTGCTGGACTGGAATTGCCCCCCCCCCCAACACATG
ATGGCTGAGGTGAGGGGTCGAAAGCTGAGGCATGGAGTCTTCCGCAATTT
TTTGTTTTTGTTTTTGTTCCTCCTCTCTCTTCCGCCTATTATATATTATA
TATTATATATTATATATCCTATTCATAGATCAGAGATACCAGGTACAGAA
CATGCTAAACGTAATATAATTCTTATAAAGAATGATTCTCTCAAAACCGT
GCACCTGTTTTTCTGGCAGCTCTTCATGGTGCCGGGGCTGCGCGAAGAAA
TTCTATCGGTAAGGATACCCTGCCGAAAGCTCGAAGACTTTCCGCGAGAG
CTGGTCGGCAGGCGCGTATCGCTCCCGCAGGACGAGGCAGCGGTGCAGGT
GCGGTCCAGGTGCTGCAGGTGCAGAGAACGTTTCTTCACCTGCGGGACGG
AAAGCTTCGCTCCTTCGACCCCGTTCGCCTGGTGGACGCCTGCACATGCC
TAGATTTAAACTTTCCCGTCAACGAGCAGAACGACGCGAGCGAGTTCTGC
GACAAGCTGCTCGACCGAGTGGAGTCGGGCATGAAGGTGGCCCAGCTCGC
GATTGAAAGTGAGATGGAGATGGCTCGGGGAAAGACCGAGGCTGGGGAAG
CTGGCGGGATGGTTCTTAGGTCGGAGAGCGGCATCGGCGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig8689:1998..3287+

>mRNA_A-nodosum_M_contig8689.1.1 ID=mRNA_A-nodosum_M_contig8689.1.1|Name=mRNA_A-nodosum_M_contig8689.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at A-nodosum_M_contig8689:1998..3287+ (Ascophyllum nodosum dioecious)
ATGTCTACTCTGGTGGATAATGTTGAGAGATTCGTTGGGCGGATGCCCCC
GCCGTCGAGGCACTGGCGGAAGAGTCACGACAGCGGAGGCTTCGTCGGGC
TGAAGAGTCAAGTCAAGACGTGCTACATGCACGCTGTTCTGCAACAGCTC
TTCATGGTGCCGGGGCTGCGCGAAGAAATTCTATCGGTAAGGATACCCTG
CCGAAAGCTCGAAGACTTTCCGCGAGAGCTGGTCGGCAGGCGCGTATCGC
TCCCGCAGGACGAGGCAGCGGTGCAGGTGTGCTGCAGGTGCAGAGAACGT
TTCTTCACCTGCGGGACGGAAAGCTTCGCTCCTTCGACCCCGTTCGCCTG
GTGGACGCCTGCACATGCCTAG
back to top