mRNA_A-nodosum_M_contig867.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig867.10.1
Unique NamemRNA_A-nodosum_M_contig867.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig867.10.1 vs. uniprot
Match: D8LMQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ6_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 4.680e-26
Identity = 53/109 (48.62%), Postives = 78/109 (71.56%), Query Frame = 1 
Query:    1 NQLKKLEGEIQAYGAGKQVFESLIVQLDERKKQLEKRIEANLHGMASSETDLGPFEDLHGAKKGDMASIYSDAKASHKEAINVLIKGLSYYQDFMRPQNSFNASPFVPK 327
            N+LK+ E EI+A  AGK  FE  + QL E+K+++E RI+AN+   AS + DLGPF  ++ AK  ++ASIY DAKA H+E + VL+   +Y+ +F RP++ F+A+PFVPK
Sbjct:   17 NKLKQQEEEIKADEAGKLEFERRLSQLREKKREIESRIDANMRWTASFDQDLGPFAKMYKAKTKEIASIYDDAKARHREGVKVLVNEFNYHPEFFRPKDGFHATPFVPK 125
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BLAST of mRNA_A-nodosum_M_contig867.10.1 vs. uniprot
Match: A0A7S3DC27_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DC27_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 1.150e-8
Identity = 35/107 (32.71%), Postives = 58/107 (54.21%), Query Frame = 1 
Query:    7 LKKLEGEIQAYGAGKQVFESLIVQLDERKKQLEKRIEANLHGMASSETDLGPFEDLHGAKKGDMASIYSDAKASHKEAINVLIKGLSYYQDFMRPQNSFNASPFVPK 327
            +++L  EI+A   G + +E  +  L  RK+ LEKRIEAN     S + ++GPF   +     D+  +Y +AK  H   +++L +   Y+  F R  + F+A PF P+
Sbjct:   35 VEQLNTEIKADDKGIEDWERQLGYLTRRKRDLEKRIEANTKWATSYDGEIGPFTQKYDNFTSDLGKLYDNAKEKHAGGLDILKEEFEYHPAFKRWHDYFSAVPFKPE 141
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig867.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMQ6_ECTSI4.680e-2648.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3DC27_9EUKA1.150e-832.71Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig867contigA-nodosum_M_contig867:144163..145198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMQ6
Model size752
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.24e-16
EggNOG OGs2CZ2R@1|root,2S82N@2759|Eukaryota
Cds size243
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870256.1537664-UTR-A-nodosum_M_contig867:144162..1445391680870256.1537664-UTR-A-nodosum_M_contig867:144162..144539Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig867 144163..144539 -
1680870256.1822956-UTR-A-nodosum_M_contig867:144782..1448361680870256.1822956-UTR-A-nodosum_M_contig867:144782..144836Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig867 144783..144836 -
1680870256.1951694-UTR-A-nodosum_M_contig867:145120..1451981680870256.1951694-UTR-A-nodosum_M_contig867:145120..145198Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig867 145121..145198 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870256.169808-CDS-A-nodosum_M_contig867:144539..1447821680870256.169808-CDS-A-nodosum_M_contig867:144539..144782Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig867 144540..144782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig867.10.1prot_A-nodosum_M_contig867.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig867 144540..144782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig867.10.1

>prot_A-nodosum_M_contig867.10.1 ID=prot_A-nodosum_M_contig867.10.1|Name=mRNA_A-nodosum_M_contig867.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=81bp
MASSETDLGPFEDLHGAKKGDMASIYSDAKASHKEAINVLIKGLSYYQDF
MRPQNSFNASPFVPKQSRGWSTGLTGRRLK*
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mRNA from alignment at A-nodosum_M_contig867:144163..145198-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig867.10.1 ID=mRNA_A-nodosum_M_contig867.10.1|Name=mRNA_A-nodosum_M_contig867.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1036bp|location=Sequence derived from alignment at A-nodosum_M_contig867:144163..145198- (Ascophyllum nodosum dioecious)
AATCAACTGAAGAAGCTTGAGGGTGAGATCCAAGCTTATGGAGCCGGGAA
GCAAGTATTCGAAAGCCTGATTGTTCAGGTGCGAGGCGACGACGCTGCTT
ACAAGAAAGTGCCGCAAGCTCATGAACAAGAGGTGCGCATGATCGACGAC
TTGTTCATCTGCTTAGACTCTTCGCGTAAATCAGCGCCAGTAGTTTCGCT
ATGCAGAACTTCCGCCTCCTGACGCGTTGAGTACTGACGAAGGCAGCAGT
TAAGAGGCGGCACGCTTGAATGTCTTCATGTGATGTCTAACTCTTTAGCC
TGGATCGCGCTTTCCGTGGACAAACTACTTGCTGCGCTCTTTCCTTTAAA
CGAAACGGGCAGCTGGACGAGAGAAAGAAACAGTTAGAGAAGCGGATCGA
GGCAAACTTGCATGGAATGGCTAGCTCTGAGACAGATCTAGGACCCTTCG
AAGATCTTCATGGTGCAAAAAAGGGAGATATGGCCTCCATCTACAGCGAC
GCCAAGGCGAGCCACAAGGAGGCCATAAACGTCCTCATCAAGGGGTTATC
GTACTATCAGGATTTCATGCGGCCGCAAAACTCGTTCAATGCAAGCCCGT
TTGTGCCAAAGCAAAGCCGCGGGTGGAGTACGGGCCTGACGGGCCGGCGA
CTTAAGTAGGCAGCGGAGGGGCGTGCTACACACATAAAGCATGAACCTAT
TATAGCCCAGGTATAATTTGATACTATGGCAGCTTAGTAACGAGGACCGG
TGGCTCGTGGATGGGGGCAAATGCCTTCATCATTCTGAGCCGTCGTACAC
TAAGCCCCCCAGGCGCGCAGACGTGCCGCACAATCGTGTGAAGCTAAACG
TGTTGACCGGACACCTTGAGATGCCACCACCGGGAGGGGTTTAGTTTTTC
GTGCAAACGTTTTTGCGCAGAGCATGACACCCGCATCCCCTTCATACCGT
TGTGTGCAGGCGACGACCCGATCCAATGCCGAACAAGAGCGAAATAAATA
GAGAGGCTTGGTGTTCAAGTGAACCTTACTATGCGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig867:144163..145198-

>mRNA_A-nodosum_M_contig867.10.1 ID=mRNA_A-nodosum_M_contig867.10.1|Name=mRNA_A-nodosum_M_contig867.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=243bp|location=Sequence derived from alignment at A-nodosum_M_contig867:144163..145198- (Ascophyllum nodosum dioecious)
ATGGCTAGCTCTGAGACAGATCTAGGACCCTTCGAAGATCTTCATGGTGC
AAAAAAGGGAGATATGGCCTCCATCTACAGCGACGCCAAGGCGAGCCACA
AGGAGGCCATAAACGTCCTCATCAAGGGGTTATCGTACTATCAGGATTTC
ATGCGGCCGCAAAACTCGTTCAATGCAAGCCCGTTTGTGCCAAAGCAAAG
CCGCGGGTGGAGTACGGGCCTGACGGGCCGGCGACTTAAGTAG
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