mRNA_A-nodosum_M_contig865.30.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig865.30.1
Unique NamemRNA_A-nodosum_M_contig865.30.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig865.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig865contigA-nodosum_M_contig865:183086..183438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size353
Hectar predicted targeting categoryother localisation
Exons1
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870254.254386-CDS-A-nodosum_M_contig865:183085..1833761680870254.254386-CDS-A-nodosum_M_contig865:183085..183376Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig865 183086..183376 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870254.2718627-UTR-A-nodosum_M_contig865:183376..1834381680870254.2718627-UTR-A-nodosum_M_contig865:183376..183438Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig865 183377..183438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig865.30.1prot_A-nodosum_M_contig865.30.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig865 183086..183376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig865.30.1

>prot_A-nodosum_M_contig865.30.1 ID=prot_A-nodosum_M_contig865.30.1|Name=mRNA_A-nodosum_M_contig865.30.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=97bp
MVERILPGKDGDAWTVEELDVSCEQMQSWVAGWVREQEDLRRDVVKRVRE
QRERGREVSGRGYLPVFEIGDYVSVARVRKPGRVPKLVQTWTGPWRV
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mRNA from alignment at A-nodosum_M_contig865:183086..183438-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig865.30.1 ID=mRNA_A-nodosum_M_contig865.30.1|Name=mRNA_A-nodosum_M_contig865.30.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=353bp|location=Sequence derived from alignment at A-nodosum_M_contig865:183086..183438- (Ascophyllum nodosum dioecious)
GGCAGCGCGTTCCGCGCTGAAGTGGTGTGCCTCGTTTGGGGTGCCCAAGG
CGTTCACCAGTGATGGTGGAACGCATTTTACCGGGGAAAGACGGTGACGC
GTGGACTGTGGAGGAGCTAGACGTGTCGTGCGAGCAAATGCAGTCCTGGG
TTGCTGGTTGGGTGCGAGAGCAGGAAGACTTACGGCGTGACGTGGTGAAG
CGCGTTCGTGAACAGCGTGAGCGTGGGCGAGAGGTGAGCGGTCGTGGATA
CTTGCCGGTGTTTGAGATTGGTGACTATGTTTCGGTAGCACGGGTGAGGA
AACCGGGTCGTGTGCCTAAGCTCGTACAGACCTGGACTGGACCGTGGCGT
GTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig865:183086..183438-

>mRNA_A-nodosum_M_contig865.30.1 ID=mRNA_A-nodosum_M_contig865.30.1|Name=mRNA_A-nodosum_M_contig865.30.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=291bp|location=Sequence derived from alignment at A-nodosum_M_contig865:183086..183438- (Ascophyllum nodosum dioecious)
ATGGTGGAACGCATTTTACCGGGGAAAGACGGTGACGCGTGGACTGTGGA
GGAGCTAGACGTGTCGTGCGAGCAAATGCAGTCCTGGGTTGCTGGTTGGG
TGCGAGAGCAGGAAGACTTACGGCGTGACGTGGTGAAGCGCGTTCGTGAA
CAGCGTGAGCGTGGGCGAGAGGTGAGCGGTCGTGGATACTTGCCGGTGTT
TGAGATTGGTGACTATGTTTCGGTAGCACGGGTGAGGAAACCGGGTCGTG
TGCCTAAGCTCGTACAGACCTGGACTGGACCGTGGCGTGTT
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