mRNA_A-nodosum_M_contig865.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig865.14.1
Unique NamemRNA_A-nodosum_M_contig865.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig865.14.1 vs. uniprot
Match: A0A6H5KYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB5_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.820e-14
Identity = 45/125 (36.00%), Postives = 77/125 (61.60%), Query Frame = 3 
Query: 1659 VWIGDSGATTHMIRSVELMYDTKPPSPQRSRIILGDGSIKKVQLVGKIDLVFHSRTDYQVTLHNVSFVPDLGFNLFSFHVVQEKHEIILNKTGAHLLGGRLVFPRRRNGSSLRATRVLPGSQANA 2033
            V++GD+GA  H++ S E +   + P P+   ++LGDG    V+  G +D++FH   D +VTL NV  VP L  ++   +++Q++HEI LN+  A +LGGR+   +  +G+ ++ TRV P  Q ++
Sbjct:  712 VFLGDTGAVVHVVPSGEKV---RLPLPEERLLMLGDGKHIPVEFFGDLDVIFHCPEDVRVTLQNVGVVPGLALDILPLNMIQDRHEIKLNRDRASILGGRVRMTKFPHGNYIQGTRVDPLPQRDS 833
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig865.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYB5_9PHAE1.820e-1436.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig865contigA-nodosum_M_contig865:52851..55173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2104
Hectar predicted targeting categoryother localisation
Exons2
Cds size1578
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870254.107891-UTR-A-nodosum_M_contig865:52850..528971680870254.107891-UTR-A-nodosum_M_contig865:52850..52897Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig865 52851..52897 +
1680870254.1246135-UTR-A-nodosum_M_contig865:53116..531291680870254.1246135-UTR-A-nodosum_M_contig865:53116..53129Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig865 53117..53129 +
1680870254.1452577-UTR-A-nodosum_M_contig865:54707..551731680870254.1452577-UTR-A-nodosum_M_contig865:54707..55173Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig865 54708..55173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870254.1352098-CDS-A-nodosum_M_contig865:53129..547071680870254.1352098-CDS-A-nodosum_M_contig865:53129..54707Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig865 53130..54707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig865.14.1prot_A-nodosum_M_contig865.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig865 53130..54707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig865.14.1

>prot_A-nodosum_M_contig865.14.1 ID=prot_A-nodosum_M_contig865.14.1|Name=mRNA_A-nodosum_M_contig865.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=526bp
MERRASETAPGETTPAPSARMGMFMPTSAPELRGRKNLAVFLERFYTWAC
VTGCDSALDSAVVIKTSGTPRAELERLYNRALVDKSLRVWQSLTKALEKE
EEVLKLVMEIGSPSVAWRALKKMVGETEDDAHDRAKREFETLQMDESESV
SEYFARVNIILMKLERYDITTSAREIKRVVMNSLTPRFPNETSILAMRGD
FNLAELELGLIRVEKLRSESSRSAPSNALAVAHAGNGPTGTGGGTRGRGR
KGRRSGGRHDDGRDRHQQGHPQMHHQQHQHQHQPPAAMPQQSYAWQQQQQ
QQQPPAAMSQQSHAWQQHHQQPNPWSSWGRPPHQQQRGRAHHQRTPRHRG
GHQAHRQRAMCQQCGKDEHFPADCVITMPAPAPHLNTAPFSGARAAQYGT
GAHPAQQYSTGHVAQYGTHHPLPTWTSPDSDTQSTHSAYGPPSNQASFAP
ASPMPPPPPISVGSPPPPASPSDSGWSFSSGPSQALQVQYVPPGEFSSSG
LTDGRVDDDSVGGVVTSPRRLLGSQ*
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mRNA from alignment at A-nodosum_M_contig865:52851..55173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig865.14.1 ID=mRNA_A-nodosum_M_contig865.14.1|Name=mRNA_A-nodosum_M_contig865.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2323bp|location=Sequence derived from alignment at A-nodosum_M_contig865:52851..55173+ (Ascophyllum nodosum dioecious)
ACGGCACGGATATGTGCTGTATGGGTAGAGAATAATACAAGACATGTGTG
TGAACAATCTATACCTGCAGGGCTGAAGTGCCTGTCCCCCATCTACGACC
ATCTCACAATCACCCGGCTTAAGGTCAACTGAACACGCTAAGCGTTAGGA
TCCTGTAGAACCTTCGAGCTAGGGGCTTCACTGACGAGGAAAAATAAGAT
GGCTGAGTTTAGAAGCGATTCCGTTGACGAGCTGATTGCAAATTTCTCCG
AAGAACAATTTGCGAGAGCACAGGACTGCATGGAGAGGAGAGCCAGCGAG
ACGGCACCTGGGGAGACTACACCTGCTCCGTCAGCCAGAATGGGTATGTT
CATGCCCACGTCCGCCCCAGAGTTGAGGGGCCGTAAAAATCTGGCGGTGT
TTTTAGAGCGGTTTTATACATGGGCGTGTGTAACAGGTTGTGACTCAGCT
CTCGATTCTGCGGTGGTAATAAAAACGTCAGGAACACCGCGCGCAGAACT
CGAGCGATTATACAACCGCGCGTTGGTAGACAAATCGCTACGCGTGTGGC
AGTCGCTCACGAAGGCACTCGAGAAGGAAGAAGAGGTCTTGAAATTGGTA
ATGGAGATCGGTTCACCCTCAGTCGCATGGCGTGCGTTGAAAAAGATGGT
AGGCGAAACAGAAGATGACGCACATGATAGAGCAAAACGCGAATTCGAGA
CCCTACAGATGGATGAGAGTGAAAGTGTATCGGAATACTTTGCCCGCGTA
AACATCATCCTCATGAAACTTGAGAGATATGATATAACAACGTCCGCACG
CGAAATCAAACGCGTCGTAATGAACAGCTTGACCCCCCGATTTCCGAATG
AGACGTCTATTCTTGCGATGAGGGGCGATTTTAACCTGGCAGAGCTTGAA
CTTGGGCTGATCCGAGTTGAGAAGCTTCGATCAGAATCGAGCAGGAGCGC
CCCGTCCAACGCGTTAGCCGTTGCCCATGCGGGAAACGGCCCAACCGGGA
CCGGAGGTGGAACCCGAGGCAGAGGCAGAAAGGGCAGGCGGTCAGGCGGG
CGCCACGACGATGGTCGGGACCGTCATCAACAAGGACATCCACAGATGCA
CCACCAGCAGCACCAGCACCAGCACCAGCCACCCGCGGCGATGCCACAAC
AGTCATACGCATGGCAACAGCAGCAGCAGCAGCAGCAGCCACCAGCGGCG
ATGTCGCAACAATCGCACGCATGGCAACAGCACCACCAGCAGCCCAACCC
CTGGAGCAGCTGGGGACGACCACCCCATCAGCAGCAGCGAGGGAGAGCGC
ATCACCAGCGTACACCACGACATCGGGGAGGACATCAGGCTCACCGGCAG
CGCGCAATGTGTCAGCAATGCGGCAAGGACGAACATTTCCCCGCAGACTG
CGTGATTACAATGCCCGCCCCAGCGCCACATTTAAATACGGCACCATTTT
CAGGAGCCCGTGCCGCACAGTACGGTACCGGAGCCCATCCCGCACAGCAG
TACAGTACAGGTCATGTCGCACAGTACGGCACTCATCACCCCCTTCCTAC
CTGGACATCACCCGACAGCGACACTCAATCGACCCATTCAGCCTACGGAC
CTCCGTCAAATCAAGCCAGTTTTGCACCAGCCTCGCCGATGCCACCGCCG
CCGCCCATATCTGTCGGGTCGCCACCTCCACCGGCGTCTCCTTCAGATTC
TGGTTGGAGCTTCTCTTCCGGGCCATCCCAAGCTCTACAGGTACAATACG
TGCCTCCAGGCGAGTTTTCGAGTTCGGGTTTGACTGATGGGCGAGTAGAT
GATGACAGTGTAGGCGGGGTAGTTACCTCCCCTCGGCGTTTGTTGGGCAG
CCAGTAGGAGTCGATCAGGTAAACGACGTGTGGATTGGGGACAGTGGTGC
GACCACGCACATGATTCGCAGCGTGGAATTAATGTACGACACTAAGCCCC
CCTCCCCCCAAAGATCAAGGATCATCCTGGGTGATGGTTCCATTAAAAAG
GTACAACTCGTGGGCAAAATCGACTTGGTGTTCCACAGCAGGACCGATTA
CCAGGTCACCCTTCATAATGTATCATTCGTGCCCGACCTAGGCTTCAACC
TGTTTTCGTTCCACGTTGTGCAGGAAAAGCACGAAATAATCCTAAATAAA
ACAGGAGCCCACTTGCTGGGTGGTCGTCTCGTGTTcCCCCGTAGGCGTAA
TGGGTCGTCTCTGCGCGCTACTAGAGTATTGCCGGGTAGTCAAGCGAACG
CGAATAACGCACTTGCAACTTTTGTTGAGCCCCCTCCCCACCGTTTCGAC
GGACCCCCTCTGGACCCCCTTCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig865:52851..55173+

>mRNA_A-nodosum_M_contig865.14.1 ID=mRNA_A-nodosum_M_contig865.14.1|Name=mRNA_A-nodosum_M_contig865.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1578bp|location=Sequence derived from alignment at A-nodosum_M_contig865:52851..55173+ (Ascophyllum nodosum dioecious)
ATGGAGAGGAGAGCCAGCGAGACGGCACCTGGGGAGACTACACCTGCTCC
GTCAGCCAGAATGGGTATGTTCATGCCCACGTCCGCCCCAGAGTTGAGGG
GCCGTAAAAATCTGGCGGTGTTTTTAGAGCGGTTTTATACATGGGCGTGT
GTAACAGGTTGTGACTCAGCTCTCGATTCTGCGGTGGTAATAAAAACGTC
AGGAACACCGCGCGCAGAACTCGAGCGATTATACAACCGCGCGTTGGTAG
ACAAATCGCTACGCGTGTGGCAGTCGCTCACGAAGGCACTCGAGAAGGAA
GAAGAGGTCTTGAAATTGGTAATGGAGATCGGTTCACCCTCAGTCGCATG
GCGTGCGTTGAAAAAGATGGTAGGCGAAACAGAAGATGACGCACATGATA
GAGCAAAACGCGAATTCGAGACCCTACAGATGGATGAGAGTGAAAGTGTA
TCGGAATACTTTGCCCGCGTAAACATCATCCTCATGAAACTTGAGAGATA
TGATATAACAACGTCCGCACGCGAAATCAAACGCGTCGTAATGAACAGCT
TGACCCCCCGATTTCCGAATGAGACGTCTATTCTTGCGATGAGGGGCGAT
TTTAACCTGGCAGAGCTTGAACTTGGGCTGATCCGAGTTGAGAAGCTTCG
ATCAGAATCGAGCAGGAGCGCCCCGTCCAACGCGTTAGCCGTTGCCCATG
CGGGAAACGGCCCAACCGGGACCGGAGGTGGAACCCGAGGCAGAGGCAGA
AAGGGCAGGCGGTCAGGCGGGCGCCACGACGATGGTCGGGACCGTCATCA
ACAAGGACATCCACAGATGCACCACCAGCAGCACCAGCACCAGCACCAGC
CACCCGCGGCGATGCCACAACAGTCATACGCATGGCAACAGCAGCAGCAG
CAGCAGCAGCCACCAGCGGCGATGTCGCAACAATCGCACGCATGGCAACA
GCACCACCAGCAGCCCAACCCCTGGAGCAGCTGGGGACGACCACCCCATC
AGCAGCAGCGAGGGAGAGCGCATCACCAGCGTACACCACGACATCGGGGA
GGACATCAGGCTCACCGGCAGCGCGCAATGTGTCAGCAATGCGGCAAGGA
CGAACATTTCCCCGCAGACTGCGTGATTACAATGCCCGCCCCAGCGCCAC
ATTTAAATACGGCACCATTTTCAGGAGCCCGTGCCGCACAGTACGGTACC
GGAGCCCATCCCGCACAGCAGTACAGTACAGGTCATGTCGCACAGTACGG
CACTCATCACCCCCTTCCTACCTGGACATCACCCGACAGCGACACTCAAT
CGACCCATTCAGCCTACGGACCTCCGTCAAATCAAGCCAGTTTTGCACCA
GCCTCGCCGATGCCACCGCCGCCGCCCATATCTGTCGGGTCGCCACCTCC
ACCGGCGTCTCCTTCAGATTCTGGTTGGAGCTTCTCTTCCGGGCCATCCC
AAGCTCTACAGGTACAATACGTGCCTCCAGGCGAGTTTTCGAGTTCGGGT
TTGACTGATGGGCGAGTAGATGATGACAGTGTAGGCGGGGTAGTTACCTC
CCCTCGGCGTTTGTTGGGCAGCCAGTAG
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