mRNA_A-nodosum_M_contig8649.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8649.7.1
Unique NamemRNA_A-nodosum_M_contig8649.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8649.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8649contigA-nodosum_M_contig8649:16891..18943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size456
Hectar predicted targeting categoryother localisation
Exons4
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870253.8201823-CDS-A-nodosum_M_contig8649:16890..169101680870253.8201823-CDS-A-nodosum_M_contig8649:16890..16910Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8649 16891..16910 -
1680870253.8345735-CDS-A-nodosum_M_contig8649:17270..173261680870253.8345735-CDS-A-nodosum_M_contig8649:17270..17326Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8649 17271..17326 -
1680870253.8481576-CDS-A-nodosum_M_contig8649:17869..179681680870253.8481576-CDS-A-nodosum_M_contig8649:17869..17968Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8649 17870..17968 -
1680870253.8595626-CDS-A-nodosum_M_contig8649:18664..189241680870253.8595626-CDS-A-nodosum_M_contig8649:18664..18924Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8649 18665..18924 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870253.870725-UTR-A-nodosum_M_contig8649:18924..189431680870253.870725-UTR-A-nodosum_M_contig8649:18924..18943Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8649 18925..18943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8649.7.1prot_A-nodosum_M_contig8649.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8649 16891..18924 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8649.7.1

>prot_A-nodosum_M_contig8649.7.1 ID=prot_A-nodosum_M_contig8649.7.1|Name=mRNA_A-nodosum_M_contig8649.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=145bp
MSLMDIIGGQGPLAEDSYIVVEDSDSDSDLMVDILMGMGGNAVEVLDTPP
PVDASAALERQHQHQRQQKRRQQPEREAAEGDTRAGSKGGCTALPSFVRI
SKTFLQRTRTSQSWQRRRRRQQRKEPESREPESRLRLQDQHTMAN
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mRNA from alignment at A-nodosum_M_contig8649:16891..18943-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8649.7.1 ID=mRNA_A-nodosum_M_contig8649.7.1|Name=mRNA_A-nodosum_M_contig8649.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2053bp|location=Sequence derived from alignment at A-nodosum_M_contig8649:16891..18943- (Ascophyllum nodosum dioecious)
GGCCTTCAGACCGCAAATCATGTCCCTGATGGACATTATCGGGGGACAAG
GACCTCTCGCTGAAGATTCGTACATCGTTGTTGAGGATAGTGATAGCGAT
AGCGATCTGATGGTGGATATCTTGATGGGGATGGGGGGAAATGCAGTAGA
GGTTCTAGACACACCACCACCTGTAGACGCATCAGCAGCTTTAGAACGGC
AGCACCAGCACCAGCGCCAGCAGAAGCGGCGTCAGCAGCCGGAGAGAGAA
GCAGCTGAAGGAGATACACGAGCGGGATCGTTGAGTTGTCAAAACATACC
ACTGCTGAATTGCTCTTTTCTGTATCGATGCCCCATCGATGCCGGTCGTC
GCCCCGGTAGCTCCCTCAGTTGGTACCTTCTGCCACGTTGGGACGTGAGT
TCGAATCCCAGTACAGTAACTGTTTTTTTTTTTTTTCCTCGAAAAAAAAA
AAATGCCCAACAAGTGGAGAACGAATAAATCGTTAGTACACGGTCGCCCC
GGTAGCTCAGAGGTACCTCGCAACCCTCTGACACGTTGGGACGTGAGTTC
GATCCCGGCAAACGGGATTTTTCTCACTAAAAAACTAAAAACAAAATAAA
AATGCCCAACGGGTGGAGAACGATTAAATCGTTAGTACACAAAAAAATCG
ACTTCACAGTCGACGAGGGAAAGGAATGGCTGAATCCTTCTCGCGAGAAA
AATTAAGGCACGCACCGCAGAAAGAAGGTGGATGAAAAATCCTTTGTGAC
CTTCCTCCTGTGTGACCCCGGCTGGTACGTCCAACAAACTTGATGTCCAG
AGTGAATGGGAAGAAAACACACACACACAAAACTCGCGTTGTTTGCGTGA
ACAGACGCTTATGAGGCAATAAGGGGCAATAAAGGTGTCCGTCGAGGTGC
TGTCCGTCGAAAAGGCGTACACGCTTTAACCATTACAGTCATACTTATAT
ATTTTTCGGTTGCTGTGCCGTACAGGAAAGGTGGGTGTACAGCGCTGCCG
AGCTTCGTAAGGATCTCGAAAACATTTCTACAGAGGACAAGGACATCCCA
AAGCTGGCAGCGGCGGCGAAGGAGGCATGCAAGCAGCATGGGGTACAGGT
CGCTATCAACGGCAATCAAAAGAAGAAGGGGACGGCGGCCGGCTGGTTAC
AAACGACGTTGAAATGCGTAAATGGCATGCCGAATCGGCAACGTGAGGTC
AAAGACAGAGCAAACGGTGAGCATACGGTACGGGTTGATGCCCCCCCTTT
GTTTACTCCGTAAAATTCAGAGTACAGGAGACAGTTATCGCACGATACCA
GAAAGGGGTCGCACCGGGTCCAGTCGTAAACGCCAACAGGGTTGGGCCAA
CAGGATAGTCCATAGGCGAAGGACACCAGCAGCGCCAATGGCCGCCATAT
TCAAACTGTGCCACCTTTTTATCGAGAAGACTGACTGTTGTACGTTTACC
ACGCAGAGACCGGTATGACGTGCGCTACAAGAGTATGGTAAACGTGGCTG
AGACAAGAAGGTGGTAAAAGGTTGCTGGGAGATTACTTGAAACTTTGTTT
GAACAAAATGGATCTATGTGAAAGAGATATTCCACAGATGCGCCCAGTAA
CCCCCGTTGTACGGCAGACAACAACGCAAAGAGCCGGAGAGCCGTGAGCC
AGAGAGTCGGCTGCGACTTCAAGGTTGGTGTTGTGTGGATTGTGGAAATT
CCTCGTGTGCAAATTTAGGGTTGGAGAGGGGAGGAGGCAAGAGAGGGCAG
GTGCGAGTGGCTGCTTTTTTTGTTTCCTCCGGCGAACACTTCCCGAGGCA
AACTTTGACGAAGTTTGCTGGCACATGTCCCGATTAGGTTCTTGTTTTTT
CACAAAAAAACGCCCCAGCTTGAAGAGTGTTGGCTCTTGTCTTGTATTCA
TGCACTTTGGGTTTTTATTGGGGCAGAATTCAATTTATCGCAATTTTTGA
AATGACCCCTTGGAATAGTCGACAAAACTAAAACGTTCACACCAGTTCCT
GCGTGACTGTGCCACGAACCGTTTTACCTTCAGATCAACATACGATGGCC
AAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8649:16891..18943-

>mRNA_A-nodosum_M_contig8649.7.1 ID=mRNA_A-nodosum_M_contig8649.7.1|Name=mRNA_A-nodosum_M_contig8649.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=435bp|location=Sequence derived from alignment at A-nodosum_M_contig8649:16891..18943- (Ascophyllum nodosum dioecious)
ATGTCCCTGATGGACATTATCGGGGGACAAGGACCTCTCGCTGAAGATTC
GTACATCGTTGTTGAGGATAGTGATAGCGATAGCGATCTGATGGTGGATA
TCTTGATGGGGATGGGGGGAAATGCAGTAGAGGTTCTAGACACACCACCA
CCTGTAGACGCATCAGCAGCTTTAGAACGGCAGCACCAGCACCAGCGCCA
GCAGAAGCGGCGTCAGCAGCCGGAGAGAGAAGCAGCTGAAGGAGATACAC
GAGCGGGATCGAAAGGTGGGTGTACAGCGCTGCCGAGCTTCGTAAGGATC
TCGAAAACATTTCTACAGAGGACAAGGACATCCCAAAGCTGGCAGCGGCG
GCGAAGGAGACAACAACGCAAAGAGCCGGAGAGCCGTGAGCCAGAGAGTC
GGCTGCGACTTCAAGATCAACATACGATGGCCAAT
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