mRNA_A-nodosum_M_contig864.26.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig864.26.1 vs. uniprot
Match: D7FXW6_ECTSI (ABC transporter ATP-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW6_ECTSI) HSP 1 Score: 137 bits (345), Expect = 1.080e-32 Identity = 79/141 (56.03%), Postives = 97/141 (68.79%), Query Frame = 1
Query: 58 YALLATVEE-LVFHFGGDRIMLAAAQTWLAHASLHKALRCLGQLAILRPSAARMNALILQGTDGPYPETGFARKGRDSGPATKGGWTNDGPEVSDGLRLEGISFTPPGSKMPALSGIDLHAPAGSVVTVVGEAGAGKVVLV 477
YAL++ VEE L F FG R+ L Q WLA+ASL AL LGQ+A LR +AARM A+ L PE G G+++G T+GGW+NDGPE +DGLRL+G+SFTP G ALS +DLHAPAGSVV V+G AGAGK L+
Sbjct: 855 YALVSVVEEELAFQFGTARVTLLITQVWLAYASLQGALSGLGQVARLRSTAARMQAIALA-----RPENGGG--GKETGLGTEGGWSNDGPEAADGLRLQGVSFTPSGRTRQALSSVDLHAPAGSVVAVLGGAGAGKTALL 988
BLAST of mRNA_A-nodosum_M_contig864.26.1 vs. uniprot
Match: A0A6H5KVL8_9PHAE (ABC transporter domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL8_9PHAE) HSP 1 Score: 136 bits (342), Expect = 2.470e-32 Identity = 79/141 (56.03%), Postives = 94/141 (66.67%), Query Frame = 1
Query: 58 YALLATVEE-LVFHFGGDRIMLAAAQTWLAHASLHKALRCLGQLAILRPSAARMNALILQGTDGPYPETGFARKGRDSGPATKGGWTNDGPEVSDGLRLEGISFTPPGSKMPALSGIDLHAPAGSVVTVVGEAGAGKVVLV 477
YAL++ VEE L F FG R+ L Q WLA+ASL AL LGQ+A LRP+AARM A+ L +PE K D+G T+GGW+NDGPE DGLRL G+SF P G ALS +DLHAPAGSVV V+G AGAGK L+
Sbjct: 692 YALVSVVEEELAFQFGTARVTLVITQVWLAYASLQGALSGLGQVARLRPTAARMQAIALA-----WPENSGGEK--DTGLGTEGGWSNDGPEADDGLRLLGVSFRPSGRTRQALSSVDLHAPAGSVVAVLGGAGAGKTALL 825
BLAST of mRNA_A-nodosum_M_contig864.26.1 vs. uniprot
Match: A0A538QRJ4_9DELT (ABC transporter ATP-binding protein n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A538QRJ4_9DELT) HSP 1 Score: 71.2 bits (173), Expect = 3.170e-10 Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 304 GGWTNDGPEVSDGLRLEGISFTPPGSKMPALSGIDLHAPAGSVVTVVGEAGAGKVVLV 477
GG + GP DG+R EG+SFT PGS+ PALSGIDLH P GS + +VGE G+GK L+
Sbjct: 331 GGTASAGPRPGDGVRFEGVSFTYPGSRQPALSGIDLHIPPGSKLAIVGENGSGKTTLI 388
BLAST of mRNA_A-nodosum_M_contig864.26.1 vs. uniprot
Match: A0A7V9L966_9DELT (ABC transporter ATP-binding protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V9L966_9DELT) HSP 1 Score: 63.2 bits (152), Expect = 1.610e-7 Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 322 GPEVSDGLRLEGISFTPPGSKMPALSGIDLHAPAGSVVTVVGEAGAGKVVLV 477
GP+ DG+R +G+SF PGS+ PAL GIDLH P GS + +VGE G+GK L+
Sbjct: 402 GPKPGDGIRFQGVSFHYPGSREPALDGIDLHIPPGSKLAIVGENGSGKTTLI 453
BLAST of mRNA_A-nodosum_M_contig864.26.1 vs. uniprot
Match: UPI00034D0FD2 (ABC transporter ATP-binding protein/permease n=1 Tax=Nocardiopsis kunsanensis TaxID=141693 RepID=UPI00034D0FD2) HSP 1 Score: 61.2 bits (147), Expect = 6.720e-7 Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1
Query: 274 KGRDSGPATKGGWTNDGPE-VSDGLRLEGISFTPPGSKMPALSGIDLHAPAGSVVTVVGEAGAGKVVLV 477
+G +G + G T + P +++GL L+ +SFT PG++ PAL GI H PAGSV+ VVGE G+GK LV
Sbjct: 328 RGHVAGELAREGCTEEPPRSLTEGLALDRVSFTYPGTERPALDGISAHLPAGSVIAVVGEYGSGKTTLV 396
BLAST of mRNA_A-nodosum_M_contig864.26.1 vs. uniprot
Match: A0A1R3UYK5_9ACTN (Lipid A export ATP-binding/permease protein MsbA n=1 Tax=Nocardiopsis sp. JB363 TaxID=1434837 RepID=A0A1R3UYK5_9ACTN) HSP 1 Score: 60.8 bits (146), Expect = 8.960e-7 Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 1
Query: 325 PEV-SDGLRLEGISFTPPGSKMPALSGIDLHAPAGSVVTVVGEAGAGKVVLV 477
PE+ S+G+ L+G+SFT PG++ AL G+D H PAGSVV VVGE G+GK LV
Sbjct: 336 PEILSEGISLDGVSFTYPGAESAALDGVDAHLPAGSVVAVVGEYGSGKSTLV 387
BLAST of mRNA_A-nodosum_M_contig864.26.1 vs. uniprot
Match: A0A2W4QAI5_9PROT (ABC transporter permease n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4QAI5_9PROT) HSP 1 Score: 59.7 bits (143), Expect = 2.130e-6 Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = 1
Query: 283 DSGPATKGGWTNDGPEVSDGLRLEGISFTPPGSKMPALSGIDLHAPAGSVVTVVGEAGAGKVVLV 477
D+ P GG GP+ DGLRLE +SFT PGS PALS + LH G + +VG G+GK L+
Sbjct: 322 DTPPRAPGGTATRGPDPGDGLRLENVSFTYPGSAQPALSDVTLHLRPGRSLALVGANGSGKTTLI 386
BLAST of mRNA_A-nodosum_M_contig864.26.1 vs. uniprot
Match: A0A510US64_9CELL (ABC transporter permease n=3 Tax=Cellulomonas TaxID=1707 RepID=A0A510US64_9CELL) HSP 1 Score: 58.5 bits (140), Expect = 5.180e-6 Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query: 328 EVSDGLRLEGISFTPPGSKMPALSGIDLHAPAGSVVTVVGEAGAGKVVLV 477
++SDG+RLEG++F PG++ L GIDLH PAG+ V +VGE GAGK L+
Sbjct: 350 DLSDGIRLEGVTFRYPGTEATVLDGIDLHLPAGTSVALVGENGAGKSTLL 399
BLAST of mRNA_A-nodosum_M_contig864.26.1 vs. uniprot
Match: A0A841BL97_9ACTN (ATP-binding cassette subfamily B protein n=2 Tax=Allocatelliglobosispora scoriae TaxID=643052 RepID=A0A841BL97_9ACTN) HSP 1 Score: 58.2 bits (139), Expect = 6.860e-6 Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1
Query: 331 VSDGLRLEGISFTPPGSKMPALSGIDLHAPAGSVVTVVGEAGAGKVVLV 477
++DG+RLE +SF PG+ +P L GIDL PAGS V +VGE GAGK LV
Sbjct: 334 LTDGIRLEHVSFAYPGTDVPVLRGIDLLLPAGSTVAIVGENGAGKTTLV 382
BLAST of mRNA_A-nodosum_M_contig864.26.1 vs. uniprot
Match: A0A4R0JZ20_9ACTN (ABC transporter ATP-binding protein n=2 Tax=Kribbella TaxID=182639 RepID=A0A4R0JZ20_9ACTN) HSP 1 Score: 57.8 bits (138), Expect = 9.210e-6 Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query: 328 EVSDGLRLEGISFTPPGSKMPALSGIDLHAPAGSVVTVVGEAGAGKVVLV 477
+++DG+RLE +SF+ GS+ PAL G++L PAG V+ VVGE GAGK LV
Sbjct: 341 QLTDGIRLEHVSFSYAGSERPALDGVELRLPAGKVIAVVGENGAGKSTLV 390 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig864.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig864.26.1 >prot_A-nodosum_M_contig864.26.1 ID=prot_A-nodosum_M_contig864.26.1|Name=mRNA_A-nodosum_M_contig864.26.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=169bp MACAAGGLGVAYALLATVEELVFHFGGDRIMLAAAQTWLAHASLHKALRCback to top mRNA from alignment at A-nodosum_M_contig864:309144..313500+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig864.26.1 ID=mRNA_A-nodosum_M_contig864.26.1|Name=mRNA_A-nodosum_M_contig864.26.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4357bp|location=Sequence derived from alignment at A-nodosum_M_contig864:309144..313500+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig864:309144..313500+ >mRNA_A-nodosum_M_contig864.26.1 ID=mRNA_A-nodosum_M_contig864.26.1|Name=mRNA_A-nodosum_M_contig864.26.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=507bp|location=Sequence derived from alignment at A-nodosum_M_contig864:309144..313500+ (Ascophyllum nodosum dioecious)back to top |