mRNA_A-nodosum_M_contig8629.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8629.5.1
Unique NamemRNA_A-nodosum_M_contig8629.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8629.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8629contigA-nodosum_M_contig8629:7411..7888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size175
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870249.6631317-CDS-A-nodosum_M_contig8629:7410..74881680870249.6631317-CDS-A-nodosum_M_contig8629:7410..7488Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8629 7411..7488 +
1680870249.674376-CDS-A-nodosum_M_contig8629:7792..78881680870249.674376-CDS-A-nodosum_M_contig8629:7792..7888Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8629 7793..7888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8629.5.1prot_A-nodosum_M_contig8629.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8629 7411..7888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8629.5.1

>prot_A-nodosum_M_contig8629.5.1 ID=prot_A-nodosum_M_contig8629.5.1|Name=mRNA_A-nodosum_M_contig8629.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=58bp
SFHQFVRGHLKPRVLLVDPDKHDTSLESLNGVLEPCFCCYHLDAKDDDIQ
GLLEVRG*
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mRNA from alignment at A-nodosum_M_contig8629:7411..7888+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8629.5.1 ID=mRNA_A-nodosum_M_contig8629.5.1|Name=mRNA_A-nodosum_M_contig8629.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=478bp|location=Sequence derived from alignment at A-nodosum_M_contig8629:7411..7888+ (Ascophyllum nodosum dioecious)
TCATTCCACCAGTTCGTTCGAGGTCACCTGAAGCCCCGAGTGCTGCTGGT
CGATCCAGACAAACACGACACGTCACTGGTGAGTTGAAACACAAGAGGCC
GCACGCGTACAAGGATGTGCACCCCTTCGCCTGGCATGCCCCAGCGAGGG
ACTCTCTCTGTTTTTCTCAATGCACTAATATCACATCCGTCAATCCTTTC
CTCCTCGCAAGAAATTCGAGCGGCACCTCTTTTGCCAAGCAAATAGTGCA
AAGGTATCGATCGAGCCACAAGTGTTGCGCAAGCACAATCTTTTCAGCCG
TGCAGTGCCAGAGAGCGCCCGAGCGCCCTGACTCTCGCATTTTTTCCCTG
CCCCCTCCGCCATCGCATGTTCCCCGTCTCAGGAGAGCTTGAACGGAGTT
TTGGAGCCTTGTTTTTGCTGTTACCATCTGGACGCCAAAGATGATGACAT
CCAAGGGCTCTTGGAAGTTAGGGGCTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8629:7411..7888+

>mRNA_A-nodosum_M_contig8629.5.1 ID=mRNA_A-nodosum_M_contig8629.5.1|Name=mRNA_A-nodosum_M_contig8629.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=174bp|location=Sequence derived from alignment at A-nodosum_M_contig8629:7411..7888+ (Ascophyllum nodosum dioecious)
TCATTCCACCAGTTCGTTCGAGGTCACCTGAAGCCCCGAGTGCTGCTGGT
CGATCCAGACAAACACGACACGTCACTGGAGAGCTTGAACGGAGTTTTGG
AGCCTTGTTTTTGCTGTTACCATCTGGACGCCAAAGATGATGACATCCAA
GGGCTCTTGGAAGTTAGGGGCTAG
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