mRNA_A-nodosum_M_contig8629.13.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8629.13.1
Unique NamemRNA_A-nodosum_M_contig8629.13.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8629.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8629contigA-nodosum_M_contig8629:21183..23611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size199
Hectar predicted targeting categoryother localisation
Exons3
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870249.8899825-CDS-A-nodosum_M_contig8629:21182..212361680870249.8899825-CDS-A-nodosum_M_contig8629:21182..21236Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8629 21183..21236 +
1680870249.9609172-CDS-A-nodosum_M_contig8629:22786..228901680870249.9609172-CDS-A-nodosum_M_contig8629:22786..22890Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8629 22787..22890 +
1680870249.9726763-CDS-A-nodosum_M_contig8629:23572..236091680870249.9726763-CDS-A-nodosum_M_contig8629:23572..23609Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8629 23573..23609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8629.13.1prot_A-nodosum_M_contig8629.13.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8629 21183..23609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8629.13.1

>prot_A-nodosum_M_contig8629.13.1 ID=prot_A-nodosum_M_contig8629.13.1|Name=mRNA_A-nodosum_M_contig8629.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=65bp
PFGLSQSNRPNKADIENKAPDRLHTKPAGDHAKAKACPSSPFNPKPTQSR
SSRLRTEASAAVHVP
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mRNA from alignment at A-nodosum_M_contig8629:21183..23611+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8629.13.1 ID=mRNA_A-nodosum_M_contig8629.13.1|Name=mRNA_A-nodosum_M_contig8629.13.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2429bp|location=Sequence derived from alignment at A-nodosum_M_contig8629:21183..23611+ (Ascophyllum nodosum dioecious)
CCGTTCGGCCTTAGCCAAAGCAACCGCCCCAACAAGGCGGACATCGAAAA
CAAGGTGTGTAATGCCTTCTAGCTCGTTACGAACGCCTAATGCATAACAA
AGGAGTGAGACGTTTTCGAAACGTTTTCGGCACCGTTTTTTTTGTTGTTG
GCCAAACTGTTTTTTTTACTCGGTAATAACTTGCTTTGTAACATGTGAAG
GGCTCCAGTGCGCAATCGTTCGCTAGCGGCCCATATCTTGGAGATCTGTG
ACAAGTGTCAATCTTATCTGAAAGGCTCTTTATTGCTATCGGGTGTGAAT
ATATCTGTTGGTCGACTGCCGGCAGCATGATAATCTATTAATATTAATTT
ATTGGTGTATTCACAGTCTTGAACTGAACTACGGTACCAGGTATAATACT
GGTTGATAGTGCTTAAAAGTGCCAAATGGAGGTTTGTGCGGAGCCATCCC
TTTGATGTATCCCTTTGCCCAAAATAAGACAGCATTTCCCCTCCAAACAG
ACATaAAACAAACAATATGGGCTCGCACGTACATGTTTCGCCTGCTTTGA
AGCAAGAAATGTTAGCGAACGCGCTCGTTTCATGTATCCGTATTGTTTAA
AATATAACAGGGCCCTACAGTGACGGAGCCCCTCCGCCTCAGTCAGAGCA
ATCGCTCTGGCCGAATGACATTGTTTCCCAAGCCCAAGGAGGAGACTCTC
ACCTCCGGGGAGTCTTTGGCGAGGATCGAAAACAAGGTACAGTATTTTTC
ATTTCGACAAAGGCGTACTGCCATGTAGCTCTCTACGAACGCCCCCCACC
TCCTTCGTACTATGAAGTTTTTCTCATTTAAATGAACTTTATAGTACGAA
GGAGGTGGGGGGCGTTCGTAGAGAGCTACATGGCAGTACGCCTTCGTCGA
AATGAAAAATACTGTACCTTGTTTTCGATCCTCGCCAAAGACTCCCCGGA
GGTGAGAGTCTCCTCCTTGGGCTTGGGAGACAATGTCATTCGGCCAGGGC
GGTTGCTCTGACTGAGCCGGAAGGGCTCCGGCACTGTAGGGCCCTGTTAT
ATTTTAGACAAAACGGATACATGAAACGAGCGCGTTCGCTAACATCCCTT
GCTTCAAAGCAGGGGCAAAGCTAGACCCCTGAGAACTCACGACAATATAT
TTTATACTAGTAGCAATCCATATTGCAAGTCTTGATAATGCTACTGAGAG
CCGAAGCTTAAGTTTTACAGTTTGAGAAGGCGTTTCTAAAACAGAACCTC
CTAAGCTATGGTAGTATTGTCGAGCATTCTGTAGAGAGCCATGGTATTTT
TTTAAAGAAAAAGGACGGGACTGCCGAGCCTGTCTCACGAGACCAAATTC
TCAAGCGCCAACGCGGACAGGGAAATATAACTAATCATTTTCCCTGTTCA
GCTGGCCTTGAGCAAGATTGGCAACCTTACCCGGTTGGTCCTTACCCCCG
CTATATGTGATGACATTACATATGTTAGGATTAGTATTATCGTGTTGATC
TTTTCTTCGCCTATTTGAAGTATGATTAGTATTATTACTGCTACTGGTAT
ACAGTAATATTTTAAATTTTTACTTTGCTGCCGCTCCTTTGCAAAATTCG
CCAGGCGCCGGACCGCTTACATACGAAACCTGCCGGGGATCACGCCAAAG
CCAAAGCCTGCCCCTCCTCACCCTTCAACCCCAAGCCGACCCAGTCCCGT
TCGTCCAGGTATTACCTTTGCTTGTTTGGGCCTCAACGTGCAATTCATAT
TTACGAAGTACTATATACCGTAATATACTATACCCTGTACACCTATTACA
ATTGTGCAAGGTCAACATTGCCATTCTGCCTGTGGTTGCTAAGGATCTTC
CCGTCTCTCCCCGGTTTTTGCATTATGAATATTTATCGCGATGATGCAAG
TTCAGCAGTCTTACAGTTCGTCAACTTATGGTTGAATTTTACTCGGTACT
CATCACGTTCTCACGCTTTCCGCTACGTTAGAAATAGCACAAATCCTGCT
TTCGAGAAGAATCGAACTAACGACTTCAGCCACTCAATAGTGTATCCACT
ATTAAATAGACCACTCACTCGGGCGACAAGTTGCGCTATTGTCACCTTCT
CTTTCCATGGAGGACTATGATAGATTCGCCATAATGTCGTCGCCTGACTG
TGGATAAACTGCAGTGAATAATTTTGCCTCTCGACTCTTTTCTTATTTTT
CTTTCCATTTGAACTACTTTGTGTATTTATAAAGTTGGACATAACGGGGG
GATCAACGCCACTATGTGTGTGTGTGTGTGTATATGTGTTTTTTTCTCCT
TTCAATTTTTGCCGTCTTCTGATGTCTTATGTCTAAGTGACTCCTTTTTT
TTCGGTATGGCGTTTTCTCTTTATTTTTTGAATTATTCAGGCTGAGGACG
GAGGCTAGTGCTGCGGTGCACGTCCCACG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8629:21183..23611+

>mRNA_A-nodosum_M_contig8629.13.1 ID=mRNA_A-nodosum_M_contig8629.13.1|Name=mRNA_A-nodosum_M_contig8629.13.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=195bp|location=Sequence derived from alignment at A-nodosum_M_contig8629:21183..23611+ (Ascophyllum nodosum dioecious)
CCGTTCGGCCTTAGCCAAAGCAACCGCCCCAACAAGGCGGACATCGAAAA
CAAGGCGCCGGACCGCTTACATACGAAACCTGCCGGGGATCACGCCAAAG
CCAAAGCCTGCCCCTCCTCACCCTTCAACCCCAAGCCGACCCAGTCCCGT
TCGTCCAGGCTGAGGACGGAGGCTAGTGCTGCGGTGCACGTCCCA
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