mRNA_A-nodosum_M_contig8615.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8615.8.1
Unique NamemRNA_A-nodosum_M_contig8615.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8615.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8615contigA-nodosum_M_contig8615:17493..19954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size240
Hectar predicted targeting categorysignal anchor
Exons2
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870249.37938-CDS-A-nodosum_M_contig8615:17492..175711680870249.37938-CDS-A-nodosum_M_contig8615:17492..17571Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8615 17493..17571 -
1680870249.389636-CDS-A-nodosum_M_contig8615:19793..198641680870249.389636-CDS-A-nodosum_M_contig8615:19793..19864Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8615 19794..19864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870249.4018235-UTR-A-nodosum_M_contig8615:19864..199541680870249.4018235-UTR-A-nodosum_M_contig8615:19864..19954Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8615 19865..19954 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8615.8.1prot_A-nodosum_M_contig8615.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8615 17493..19864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8615.8.1

>prot_A-nodosum_M_contig8615.8.1 ID=prot_A-nodosum_M_contig8615.8.1|Name=mRNA_A-nodosum_M_contig8615.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=50bp
MHGPPKISYTGTCIVYIIFIISIGDAAPSRRRSPLPTLASECSTRKEDFS
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mRNA from alignment at A-nodosum_M_contig8615:17493..19954-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8615.8.1 ID=mRNA_A-nodosum_M_contig8615.8.1|Name=mRNA_A-nodosum_M_contig8615.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2462bp|location=Sequence derived from alignment at A-nodosum_M_contig8615:17493..19954- (Ascophyllum nodosum dioecious)
ACCGGGGCAATGTCGAGGAGAAACTCACTGTTATACAAAAAGTAATGTAA
GCTTACTTACATTGATCCAAACGACAAAAAAAACTAACAAATGCATGGGC
CACCGAAAATATCATATACTGGTACTTGTATAGTCTATATAATATTCATC
ATAAGTATCGGGCAACTAGTAATCCCAGTTATTTGGAAAGGAACACGTGT
CTCTCATACTGTACTTCAGTATAACACAAAGGAGGAAGGGTCGGTTATGA
TTTTATAAACCCTCACATTGCGAAAAAAAAAGAGTTCGCGCACCCTTCAT
GCATTGATTTGTATTAAGGCATTTATTTATCTTGTCCCCTCCACGATTGT
CTGTACGAAGAACGATGTGTACAGTACAACAAATCCTTGGGTAAGCTTTT
TTTTTAATTACCCATTCCTATCCACGAAAGCATTCGAAAAGAAGGCAAAA
ATATTACATCATGCCAAAGACTCCGTTAATGATTGGCCGGAAAAATGCAC
CACCTACCGAAGCGCTTTTTTTTCTCACATTGACGCAACTCAAACAAAAC
GGGGATGCTCAGAAGGTCTACACGCGTTCAGATTTTTCTTTAAACACTAG
GAACAGGAAAAGTCAGGCGATAAAATATTAGTGCCCTCGAGAAATCACAA
GACGTATTTTCCCCGCGCCAACAAAGCCGTGGGGGGATTATATATTGTCA
TAATTTAGTATCTCAAAAGAGACAAAAGGAACCAAAGGGAAGTCCGTCAT
ATTTTTATATACCTTTAGACTATAGTGAAGCTATGATGCCATGACAAATA
TTTCAAGATACTATTTCAAGATAATCGTGCGATTAACCTCCAACTTTTTA
GTGTCTAGTGTCTAAAACATGTGCAACAAAGACGGTCAATATTCGCCCCC
TCGCCCCCCCTAAAAAAGAAGCGCCTAATAATACATGGTGTTCCAATCTC
AACATACTAGAACTAACATGGCCCCGCTGTCCCCCCGGAAACGGTCACGA
GAAAACTGAACTTGAACTGGCCCAAGACCACAAAAAAGATACATATAACG
AGCAAAGGAGGAAACCAAATAAGGTACAGTACTCGAAAGGGTATAGAACG
CACGAAGCGGCGGCGGGTACTAACTGCACTTTCTGTTCTATGACGCGCTA
CAAAAAAGCGCAAGACCACAAAAGAAGATTCAACACATAAAGAGTAAAGT
AGAAAATCCAATAGGGTTCCGTCTTGGAAACAGTAAACAGTAAAACGCAA
GAAGCGGCGGCGGGCACCGCACTGCTACGCAAGTCCACAAAAAAAGTACA
TAAAAGGTACATCTAACGAGTAAAGGAGGAAACCGTAAAAGGCACAGTAT
TCGAAATGATGTAAAAAAAACATAGGAAGCGGCGGCAGTTATTGACTGAA
CTTTCTGTTCTGTGAAGCGCGCTACAAAAAAAGCAACGCCCGTACCCTTC
GTCGTTTGTTCACTACACTAAACGCCGAGGGTATTTACCGCTGTATGGTG
TCATTTTCTCCTCCTTTTCTTTTTCGTGTCGATATCACACCGCACGTACA
AACAAGCCCCTCTAGTTTCGTTTCGACCGGGGGCCCCGCCCAACACTAAA
CCTCAAAAGATTGGTGGTTCGTAGGGGAGGATCCCCGGGGGCTAAAAATG
CTCGGCGATGCCGTTACCGGGTGCTTCTCCTCTCCCCCCCGTCGTTGTTT
GAAACAGATTTGAGATTTTTCTACGGCCCTTCGTTCGATGTGTTACCCAG
GCTCAGAGCGGTCCTTCTGCGGCATCAAGATGCGGCTTGCGCTCTTGCCC
ACGTCTGAAACGGTAAAGCGTAGCATCGTGCGGCAGGTAACGCTACTGCT
GTTGTGTTTCAATCGGAGTCCGAGAAAAAGAGGGAAAAGCATCTTCTCCG
AGGTACGGCTAGCTCTACGCATACACAACACTTACTTAATAATAACAAAA
AACTACGACAACGCGAACAGCACGCAGCGTTGGTCGGCCTCCTTTGTGGT
GTCCCTCTCATCAACAAAGGTGGGAAATCGCCTAGACGCAACCGAATAAC
CTAATGAATCGCGCGTGTCCCTCTTCCGCTGCCGCGCTGGCGTCGCCATT
GCCGATCGGTCGCATTCGCCCGGTGCTCTCGTTGATTGACCTCTTCCACG
AACTAAACCACCGGGGCTTGGCGATGTCTGGCTTCTTCCTTCCTGTCTGT
GAACGTCGGGCTTGTATTGCTCTGGTCCTCATGCTGATGAATGATGTCGT
CCGAGGGGGCAATACGATCGGGCTGTCCAGAGGAAGACGTCCCAAAGCCT
AGTCGGCCGAAAAAGCTCGACGTAGGCGGTTTCTTGACTGCGACGTTTCT
CCGGGGAGGGTCCCCCGCCCATGCCTCCTTGAGGGACGCTGCACCGTCTC
GACGGAGGTCACCATTGCCGACGCTCGCTAGCGAGTGCTCTACGCGGAAG
GAGGACTTCTCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8615:17493..19954-

>mRNA_A-nodosum_M_contig8615.8.1 ID=mRNA_A-nodosum_M_contig8615.8.1|Name=mRNA_A-nodosum_M_contig8615.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=150bp|location=Sequence derived from alignment at A-nodosum_M_contig8615:17493..19954- (Ascophyllum nodosum dioecious)
ATGCATGGGCCACCGAAAATATCATATACTGGTACTTGTATAGTCTATAT
AATATTCATCATAAGTATCGGGGACGCTGCACCGTCTCGACGGAGGTCAC
CATTGCCGACGCTCGCTAGCGAGTGCTCTACGCGGAAGGAGGACTTCTCG
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