mRNA_A-nodosum_M_contig861.8.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: D8LNV5_ECTSI (ATP-binding cassette superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV5_ECTSI) HSP 1 Score: 70.5 bits (171), Expect = 1.750e-11 Identity = 42/86 (48.84%), Postives = 54/86 (62.79%), Query Frame = -1
Query: 145 GVRVEGAVRVNGVEVGPATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRL-----IWGVC------------SNRANREGRVLEV 351
G RV GAVR+NG V A V +SGYV QEDVLP+T+T FEHLMFHAELR+ + G C +++ +R+ RVL+V
Sbjct: 1432 GGRVTGAVRINGRAVTAAEVRGVSGYVTQEDVLPETLTCFEHLMFHAELRMSTPEGVTGACGCGXXXXXXXHRASQEDRKHRVLQV 1517
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: A0A6H5KKD9_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKD9_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 4.430e-11 Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = -1
Query: 139 GAVRVNGVEVGPATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRLIWGVCSNRANREGRVLEVSE 336
GAVR+NG+ GPA V ++S YV QEDVLP+T+T +EHLMFHA+LRL A R RV EV E
Sbjct: 1506 GAVRLNGLAAGPAEVRALSAYVTQEDVLPETLTCYEHLMFHAQLRLPGHTTL--ARRHDRVAEVLE 1569
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: A0A6H5KT00_9PHAE (ABC protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT00_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 8.140e-11 Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = -1
Query: 199 GVRVEGAVRVNGVEVGPATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRL 351
G RV GAVR+NG V A V +SGYV QEDVLP+T+T FEHLMFHAELR+
Sbjct: 1339 GGRVTGAVRINGRAVTAAEVRGVSGYVTQEDVLPETLTCFEHLMFHAELRM 1389
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: A0A835Z9G6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G6_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 6.890e-6 Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = -1
Query: 145 PATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRLI--WGVCSNRANREGRVLEV 303
P V ++SGYVAQ+DVLP T+T +EHL FHA LRL G R RVLEV
Sbjct: 47 PEDVRAVSGYVAQDDVLPGTLTVYEHLAFHAALRLPRGHGRGGGATQRTARVLEV 101
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: A0A7S0CRH6_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CRH6_MICPS) HSP 1 Score: 53.9 bits (128), Expect = 9.750e-6 Identity = 30/59 (50.85%), Postives = 36/59 (61.02%), Query Frame = -1
Query: 199 FLVAAAVGGVRVEGAVRVNGVEVGPATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRL 375
FL G G VRV+GV V + +ISGYV Q+DVLP T T +EHL FHA LR+
Sbjct: 126 FLAGRTPKGQASRGTVRVDGVRVSAKEMRAISGYVPQDDVLPGTSTVWEHLTFHATLRI 184
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: A0A090M588_OSTTA (ABC transporter, conserved site n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M588_OSTTA) HSP 1 Score: 53.5 bits (127), Expect = 1.420e-5 Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = -1
Query: 199 VEGAVRVNGVEVGPATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRL 342
+ G +R+NG + + + +SGYV Q+DVLP + T +EHLMFHA+LRL
Sbjct: 1186 IRGDIRINGQPIVSSQIRRLSGYVTQDDVLPGSATVYEHLMFHAKLRL 1233
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: A0A8J2KFK1_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2KFK1_9HEXA) HSP 1 Score: 52.8 bits (125), Expect = 2.440e-5 Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = -1
Query: 151 VRVEGAVRVNGVEVGPATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRLIWGVC-SNRANREGRVL 348
V+V G +NGV +GP + ++SGY+ Q+D+LP+ ++ EHLMF A LRL G+ RA R L
Sbjct: 121 VKVSGDRCINGVPIGPEVMSAVSGYLQQDDLLPNALSCREHLMFSATLRLPRGMSMKQRAQRVDEAL 187
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: A4S3Q8_OSTLU (ABC(ABCG) family transporter: multidrug (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S3Q8_OSTLU) HSP 1 Score: 51.6 bits (122), Expect = 6.170e-5 Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = -1
Query: 199 VEGAVRVNGVEVGPATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRL 342
+ G +RVNG + + + +SGYV Q+DVLP T +EHL+FHA+LRL
Sbjct: 177 IRGDIRVNGQPMVSSQIRRLSGYVTQDDVLPGNATVYEHLLFHAKLRL 224
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: A0A1D1VBD0_RAMVA (ABC transporter domain-containing protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1VBD0_RAMVA) HSP 1 Score: 51.6 bits (122), Expect = 6.200e-5 Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = -1
Query: 154 VEGAVRVNGVEVGPATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRLIWGVCSNRANREGRV 342
++G+V+VNGVE+GPA + ISGYV Q+D+ T+T EH+ F A LR+ G RE R+
Sbjct: 157 IDGSVKVNGVELGPA-ISQISGYVQQDDLFFPTLTVREHMQFQAALRI--GRLLTTQERENRI 216
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: A0A7R9T0R5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9T0R5_9CHLO) HSP 1 Score: 51.6 bits (122), Expect = 6.570e-5 Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = -1
Query: 199 VEGAVRVNGVEVGPATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRL 342
+ G +RVNG + + + +SGYV Q+DVLP T +EHL+FHA+LRL
Sbjct: 559 IRGDIRVNGQPMVSSQIRRLSGYVTQDDVLPGNATVYEHLLFHAKLRL 606 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig861.8.1 >prot_A-nodosum_M_contig861.8.1 ID=prot_A-nodosum_M_contig861.8.1|Name=mRNA_A-nodosum_M_contig861.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=134bp TSCSFRDLEVKAGNRESFRAGWAAEAGNIKERCLHKIKSPLSPILALAHLback to top mRNA from alignment at A-nodosum_M_contig861:16384..16787- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig861.8.1 ID=mRNA_A-nodosum_M_contig861.8.1|Name=mRNA_A-nodosum_M_contig861.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=404bp|location=Sequence derived from alignment at A-nodosum_M_contig861:16384..16787- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig861:16384..16787- >mRNA_A-nodosum_M_contig861.8.1 ID=mRNA_A-nodosum_M_contig861.8.1|Name=mRNA_A-nodosum_M_contig861.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at A-nodosum_M_contig861:16384..16787- (Ascophyllum nodosum dioecious)back to top |