mRNA_A-nodosum_M_contig861.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig861.8.1
Unique NamemRNA_A-nodosum_M_contig861.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: D8LNV5_ECTSI (ATP-binding cassette superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV5_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.750e-11
Identity = 42/86 (48.84%), Postives = 54/86 (62.79%), Query Frame = -1
Query:  145 GVRVEGAVRVNGVEVGPATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRL-----IWGVC------------SNRANREGRVLEV 351
            G RV GAVR+NG  V  A V  +SGYV QEDVLP+T+T FEHLMFHAELR+     + G C            +++ +R+ RVL+V
Sbjct: 1432 GGRVTGAVRINGRAVTAAEVRGVSGYVTQEDVLPETLTCFEHLMFHAELRMSTPEGVTGACGCGXXXXXXXHRASQEDRKHRVLQV 1517          
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: A0A6H5KKD9_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKD9_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 4.430e-11
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = -1
Query:  139 GAVRVNGVEVGPATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRLIWGVCSNRANREGRVLEVSE 336
            GAVR+NG+  GPA V ++S YV QEDVLP+T+T +EHLMFHA+LRL        A R  RV EV E
Sbjct: 1506 GAVRLNGLAAGPAEVRALSAYVTQEDVLPETLTCYEHLMFHAQLRLPGHTTL--ARRHDRVAEVLE 1569          
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: A0A6H5KT00_9PHAE (ABC protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT00_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 8.140e-11
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = -1
Query:  199 GVRVEGAVRVNGVEVGPATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRL 351
            G RV GAVR+NG  V  A V  +SGYV QEDVLP+T+T FEHLMFHAELR+
Sbjct: 1339 GGRVTGAVRINGRAVTAAEVRGVSGYVTQEDVLPETLTCFEHLMFHAELRM 1389          
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: A0A835Z9G6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 6.890e-6
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = -1
Query:  145 PATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRLI--WGVCSNRANREGRVLEV 303
            P  V ++SGYVAQ+DVLP T+T +EHL FHA LRL    G       R  RVLEV
Sbjct:   47 PEDVRAVSGYVAQDDVLPGTLTVYEHLAFHAALRLPRGHGRGGGATQRTARVLEV 101          
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: A0A7S0CRH6_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CRH6_MICPS)

HSP 1 Score: 53.9 bits (128), Expect = 9.750e-6
Identity = 30/59 (50.85%), Postives = 36/59 (61.02%), Query Frame = -1
Query:  199 FLVAAAVGGVRVEGAVRVNGVEVGPATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRL 375
            FL      G    G VRV+GV V    + +ISGYV Q+DVLP T T +EHL FHA LR+
Sbjct:  126 FLAGRTPKGQASRGTVRVDGVRVSAKEMRAISGYVPQDDVLPGTSTVWEHLTFHATLRI 184          
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: A0A090M588_OSTTA (ABC transporter, conserved site n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M588_OSTTA)

HSP 1 Score: 53.5 bits (127), Expect = 1.420e-5
Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = -1
Query:  199 VEGAVRVNGVEVGPATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRL 342
            + G +R+NG  +  + +  +SGYV Q+DVLP + T +EHLMFHA+LRL
Sbjct: 1186 IRGDIRINGQPIVSSQIRRLSGYVTQDDVLPGSATVYEHLMFHAKLRL 1233          
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: A0A8J2KFK1_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2KFK1_9HEXA)

HSP 1 Score: 52.8 bits (125), Expect = 2.440e-5
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = -1
Query:  151 VRVEGAVRVNGVEVGPATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRLIWGVC-SNRANREGRVL 348
            V+V G   +NGV +GP  + ++SGY+ Q+D+LP+ ++  EHLMF A LRL  G+    RA R    L
Sbjct:  121 VKVSGDRCINGVPIGPEVMSAVSGYLQQDDLLPNALSCREHLMFSATLRLPRGMSMKQRAQRVDEAL 187          
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: A4S3Q8_OSTLU (ABC(ABCG) family transporter: multidrug (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S3Q8_OSTLU)

HSP 1 Score: 51.6 bits (122), Expect = 6.170e-5
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = -1
Query:  199 VEGAVRVNGVEVGPATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRL 342
            + G +RVNG  +  + +  +SGYV Q+DVLP   T +EHL+FHA+LRL
Sbjct:  177 IRGDIRVNGQPMVSSQIRRLSGYVTQDDVLPGNATVYEHLLFHAKLRL 224          
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: A0A1D1VBD0_RAMVA (ABC transporter domain-containing protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1VBD0_RAMVA)

HSP 1 Score: 51.6 bits (122), Expect = 6.200e-5
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = -1
Query:  154 VEGAVRVNGVEVGPATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRLIWGVCSNRANREGRV 342
            ++G+V+VNGVE+GPA +  ISGYV Q+D+   T+T  EH+ F A LR+  G       RE R+
Sbjct:  157 IDGSVKVNGVELGPA-ISQISGYVQQDDLFFPTLTVREHMQFQAALRI--GRLLTTQERENRI 216          
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Match: A0A7R9T0R5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9T0R5_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 6.570e-5
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = -1
Query:  199 VEGAVRVNGVEVGPATVCSISGYVAQEDVLPDTMTRFEHLMFHAELRL 342
            + G +RVNG  +  + +  +SGYV Q+DVLP   T +EHL+FHA+LRL
Sbjct:  559 IRGDIRVNGQPMVSSQIRRLSGYVTQDDVLPGNATVYEHLLFHAKLRL 606          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig861.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LNV5_ECTSI1.750e-1148.84ATP-binding cassette superfamily n=1 Tax=Ectocarpu... [more]
A0A6H5KKD9_9PHAE4.430e-1157.58ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5KT00_9PHAE8.140e-1168.63ABC protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP... [more]
A0A835Z9G6_9STRA6.890e-654.55P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S0CRH6_MICPS9.750e-650.85Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A090M588_OSTTA1.420e-550.00ABC transporter, conserved site n=2 Tax=Ostreococc... [more]
A0A8J2KFK1_9HEXA2.440e-543.28Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
A4S3Q8_OSTLU6.170e-550.00ABC(ABCG) family transporter: multidrug (Fragment)... [more]
A0A1D1VBD0_RAMVA6.200e-546.03ABC transporter domain-containing protein n=1 Tax=... [more]
A0A7R9T0R5_9CHLO6.570e-550.00Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig861contigA-nodosum_M_contig861:16384..16787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size405
Hectar predicted targeting categoryother localisation
Exons1
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870246.5675614-CDS-A-nodosum_M_contig861:16385..167871680870246.5675614-CDS-A-nodosum_M_contig861:16385..16787Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig861 16386..16787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig861.8.1prot_A-nodosum_M_contig861.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig861 16386..16787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig861.8.1

>prot_A-nodosum_M_contig861.8.1 ID=prot_A-nodosum_M_contig861.8.1|Name=mRNA_A-nodosum_M_contig861.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=134bp
TSCSFRDLEVKAGNRESFRAGWAAEAGNIKERCLHKIKSPLSPILALAHL
KHTALPIRPIGANPPYQSQFGVKHEVLEASHRVRQHVLLGYVSRDTAHRR
RPHLNAVHAYGALDANAPHRSSHQKTPTSRGAVR
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mRNA from alignment at A-nodosum_M_contig861:16384..16787-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig861.8.1 ID=mRNA_A-nodosum_M_contig861.8.1|Name=mRNA_A-nodosum_M_contig861.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=404bp|location=Sequence derived from alignment at A-nodosum_M_contig861:16384..16787- (Ascophyllum nodosum dioecious)
ACGAGCTGTTCGTTTCGTGACTTGGAAGTTAAAGCCGGAAACAGAGAAAG TTTTCGTGCTGGGTGGGCAGCAGAGGCCGGCAATATTAAAGAGAGGTGTT TGCATAAAATAAAATCTCCTCTATCGCCTATCTTAGCCCTCGCTCACCTC AAGCACACGGCCCTCCCTATTCGCCCGATTGGAGCAAACCCCCCATATCA ATCTCAATTCGGCGTGAAACATGAGGTGCTCGAAGCGAGTCATCGTGTCC GGCAGCACGTCCTCCTGGGCTACGTATCCCGAGATACTGCACACCGTCGC CGGCCCCACCTCAACGCCGTTCACGCGTACGGCGCCCTCGACGCGAACGC CCCCCACCGCAGCAGCCACCAGAAAACCCCGACATCTCGCGGTGCCGTCC GGCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig861:16384..16787-

>mRNA_A-nodosum_M_contig861.8.1 ID=mRNA_A-nodosum_M_contig861.8.1|Name=mRNA_A-nodosum_M_contig861.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at A-nodosum_M_contig861:16384..16787- (Ascophyllum nodosum dioecious)
ACGAGCTGTTCGTTTCGTGACTTGGAAGTTAAAGCCGGAAACAGAGAAAG
TTTTCGTGCTGGGTGGGCAGCAGAGGCCGGCAATATTAAAGAGAGGTGTT
TGCATAAAATAAAATCTCCTCTATCGCCTATCTTAGCCCTCGCTCACCTC
AAGCACACGGCCCTCCCTATTCGCCCGATTGGAGCAAACCCCCCATATCA
ATCTCAATTCGGCGTGAAACATGAGGTGCTCGAAGCGAGTCATCGTGTCC
GGCAGCACGTCCTCCTGGGCTACGTATCCCGAGATACTGCACACCGTCGC
CGGCCCCACCTCAACGCCGTTCACGCGTACGGCGCCCTCGACGCGAACGC
CCCCCACCGCAGCAGCCACCAGAAAACCCCGACATCTCGCGGTGCCGTCC
GG
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