mRNA_A-nodosum_M_contig861.41.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig861.41.1
Unique NamemRNA_A-nodosum_M_contig861.41.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig861.41.1 vs. uniprot
Match: A0A6H5KLE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE4_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 8.270e-25
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 2
Query:   14 VSG*EVVGVRKVKRTYRIRTRVASCFCSACQRSRYEDCHVNRAYPSIVPALRDGQVRETIIMDTGVAPV 220
            VSG E V  RKVKRTYR+RTR+ASCFCSACQR  YE C+V++ YP +VPAL+ G+V+ET+IMDTGVAPV
Sbjct:  134 VSGEEDVTCRKVKRTYRLRTRLASCFCSACQRCEYEQCYVSKTYPRLVPALQKGEVKETVIMDTGVAPV 202          
BLAST of mRNA_A-nodosum_M_contig861.41.1 vs. uniprot
Match: A0A6H5JDR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR7_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.420e-24
Identity = 48/71 (67.61%), Postives = 60/71 (84.51%), Query Frame = 2
Query:    8 ESVSG*EVVGVRKVKRTYRIRTRVASCFCSACQRSRYEDCHVNRAYPSIVPALRDGQVRETIIMDTGVAPV 220
            + VSG E V  RKVKRTYR+R+R+ASCFCSACQR  YE C V++ YP +VPAL++G+V+ET+IMDTGVAPV
Sbjct:  109 DPVSGEEDVTCRKVKRTYRLRSRLASCFCSACQRCEYEQCDVSKTYPRLVPALQEGEVKETVIMDTGVAPV 179          
BLAST of mRNA_A-nodosum_M_contig861.41.1 vs. uniprot
Match: A0A6H5JLE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.000e-24
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 2
Query:   14 VSG*EVVGVRKVKRTYRIRTRVASCFCSACQRSRYEDCHVNRAYPSIVPALRDGQVRETIIMDTGVAPV 220
            VSG E V  RKVKRTYR+RTR+ASCFCSACQR  YE C+VN+ YP +VPAL++G+V+ET+IMDTGVAPV
Sbjct:  354 VSGEEGVTCRKVKRTYRLRTRLASCFCSACQRFEYEQCYVNKKYPRLVPALQEGEVKETVIMDTGVAPV 422          
BLAST of mRNA_A-nodosum_M_contig861.41.1 vs. uniprot
Match: A0A6H5L2L6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L6_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.240e-23
Identity = 48/71 (67.61%), Postives = 61/71 (85.92%), Query Frame = 2
Query:    8 ESVSG*EVVGVRKVKRTYRIRTRVASCFCSACQRSRYEDCHVNRAYPSIVPALRDGQVRETIIMDTGVAPV 220
            + VSG E V  RKVKRTYR+RTR+ASCFCSACQR  +E C+V++ YP ++PALR+G+V+ET+IMDTGVAPV
Sbjct:  613 DPVSGEEDVTCRKVKRTYRLRTRLASCFCSACQRCEHEQCYVSKTYPRLLPALREGEVKETVIMDTGVAPV 683          
BLAST of mRNA_A-nodosum_M_contig861.41.1 vs. uniprot
Match: A0A6H5JBS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS1_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 3.420e-23
Identity = 48/71 (67.61%), Postives = 59/71 (83.10%), Query Frame = 2
Query:    8 ESVSG*EVVGVRKVKRTYRIRTRVASCFCSACQRSRYEDCHVNRAYPSIVPALRDGQVRETIIMDTGVAPV 220
            + VSG E V  RKVKRTYR+RTR+ASCFCSACQR  YE C+V++ YP +VPAL+ G+V+ET+IMDTG APV
Sbjct:  289 DPVSGEEDVTCRKVKRTYRLRTRLASCFCSACQRCEYEQCYVSKTYPRLVPALQQGEVKETVIMDTGGAPV 359          
BLAST of mRNA_A-nodosum_M_contig861.41.1 vs. uniprot
Match: A0A6H5JA27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA27_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.880e-23
Identity = 46/71 (64.79%), Postives = 59/71 (83.10%), Query Frame = 2
Query:    8 ESVSG*EVVGVRKVKRTYRIRTRVASCFCSACQRSRYEDCHVNRAYPSIVPALRDGQVRETIIMDTGVAPV 220
            + V G E V  RKVKRTYR+RTR+ASCFCSACQR  YE C+V++ YP +VPAL++G+V+ET+I DTGVAP+
Sbjct:  208 DPVPGEEDVTCRKVKRTYRLRTRLASCFCSACQRCEYEQCYVSKTYPRLVPALQEGEVKETVITDTGVAPL 278          
BLAST of mRNA_A-nodosum_M_contig861.41.1 vs. uniprot
Match: A0A6H5KGU5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU5_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 3.790e-22
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 2
Query:    8 ESVSG*EVVGVRKVKRTYRIRTRVASCFCSACQRSRYEDCHVNRAYPSIVPALRDGQVRETIIMDTGVA 214
            E +SG EVV VRK  R + +RTR+ASCFCSACQR +YEDC+VNRAYP +VP +R+G+V+ET+IMDTGVA
Sbjct:  619 EPMSGEEVVVVRKETRVHMLRTRLASCFCSACQRFQYEDCYVNRAYPDLVPPMREGKVKETVIMDTGVA 687          
BLAST of mRNA_A-nodosum_M_contig861.41.1 vs. uniprot
Match: A0A6H5KI10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI10_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 7.000e-22
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 2
Query:    8 ESVSG*EVVGVRKVKRTYRIRTRVASCFCSACQRSRYEDCHVNRAYPSIVPALRDGQVRETIIMDTGVAPV 220
            + VSG E V  RKVKRTY +RTR+ASCFCSACQRS YE C+V++ YP +VPA++ G V+ET+ MDTGVAPV
Sbjct:  819 DPVSGEEDVTCRKVKRTYSLRTRLASCFCSACQRSEYEQCYVSKTYPRLVPAMQKGVVKETVTMDTGVAPV 889          
BLAST of mRNA_A-nodosum_M_contig861.41.1 vs. uniprot
Match: A0A6H5KTJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ4_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.170e-21
Identity = 60/134 (44.78%), Postives = 80/134 (59.70%), Query Frame = 2
Query:    8 ESVSG*EVVGVRKVKRTYRIRTRVASCFCSACQRSRYEDCHVNRAYPSIVPALRDGQVRETIIMDTGVAPVGYHL*VWTENMSDGDG---YWDSVARERLGGGFQVVGGA------WK--GGRTHSYYCPFRIV 376
            + +S  E V  RKVKRTY +RTR+ASCFCSAC RS YE C+V++ YP +VPA++D  V+E +IMDTGVAPV        EN S+G     Y     ++R+ G     G +      W+  G +   Y+CPFR V
Sbjct:  421 DPISREEDVTCRKVKRTYSLRTRLASCFCSACLRSEYEQCYVSKTYPRLVPAMKDDVVKEPVIMDTGVAPVD-------ENASEGINFPRYKKECKKKRITGTQWQEGDSATASKIWEELGRKKAQYFCPFRKV 547          
BLAST of mRNA_A-nodosum_M_contig861.41.1 vs. uniprot
Match: A0A6H5JQK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQK2_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 4.370e-21
Identity = 49/85 (57.65%), Postives = 63/85 (74.12%), Query Frame = 2
Query:    8 ESVSG*EVVGVRKVKRTYRIRTRVASCFCSACQRSRYEDCHVNRAYPSIVPALRDGQVRETIIMDTGVAPVGYHL*VWTENMSDG 262
            + +SG E V  +KVKRTY +RTR+ASCFCSAC+RS YE  +V++ YP +VPA+ DG V+ET+IMDTGVAPV        EN S+G
Sbjct:  590 DPISGEEDVTCKKVKRTYSLRTRLASCFCSACRRSEYEQYYVSKTYPRLVPAMEDGVVKETVIMDTGVAPVD-------ENSSEG 667          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig861.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KLE4_9PHAE8.270e-2571.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDR7_9PHAE1.420e-2467.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLE6_9PHAE2.000e-2472.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2L6_9PHAE2.240e-2367.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBS1_9PHAE3.420e-2367.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA27_9PHAE8.880e-2364.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGU5_9PHAE3.790e-2268.12Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI10_9PHAE7.000e-2266.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTJ4_9PHAE1.170e-2144.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQK2_9PHAE4.370e-2157.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig861contigA-nodosum_M_contig861:245643..246098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size458
Hectar predicted targeting categoryother localisation
Exons1
Cds size456
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870246.6143425-CDS-A-nodosum_M_contig861:245642..2460981680870246.6143425-CDS-A-nodosum_M_contig861:245642..246098Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig861 245643..246098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig861.41.1prot_A-nodosum_M_contig861.41.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig861 245643..246098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig861.41.1

>prot_A-nodosum_M_contig861.41.1 ID=prot_A-nodosum_M_contig861.41.1|Name=mRNA_A-nodosum_M_contig861.41.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=152bp
SRRVGIGLGGGWCEEGETDVQDQNPCGVVFLLGVPEVSIRGLPRQQSVPE
YRSRTEGRSSKGNDHHGHWGSAGRISPLSLDGKHVRWRRLLGLSRKRATR
RRLSSCGRSLEGRKNPQLLLPVSDSVLLFKCVLLLVFVVGSCDGRKRLFE
GR
back to top

mRNA from alignment at A-nodosum_M_contig861:245643..246098+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig861.41.1 ID=mRNA_A-nodosum_M_contig861.41.1|Name=mRNA_A-nodosum_M_contig861.41.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=456bp|location=Sequence derived from alignment at A-nodosum_M_contig861:245643..246098+ (Ascophyllum nodosum dioecious)
AGCAGGCGAGTCGGTATCGGGCTAGGAGGTGGTTGGTGTGAGGAAGGTGA AACGGACGTACAGGATCAGAACCCGTGTGGCGTCGTGTTTTTGCTCGGCG TGCCAGAGGTCTCGATACGAGGATTGCCACGTCAACAGAGCGTACCCGAG TATCGTTCCCGCACTGAGGGACGGTCAAGTAAGGGAAACGATCATCATGG ACACTGGGGTAGCGCCGGTAGGATATCACCTTTAAGTCTGGACGGAAAAC ATGTCAGATGGCGACGGTTACTGGGACTCAGTCGCAAGAGAGCGACTCGG AGGCGGCTTTCAAGTTGTGGGAGGAGCTTGGAAGGGAGGAAGAACCCACA GTTATTATTGCCCGTTTCGGATAGTGTGTTGCTGTTTAAGTGTGTCCTGC TTCTTGTGTTTGTAGTCGGAAGTTGTGATGGGCGTAAACGTTTGTTTGAA GGTCGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig861:245643..246098+

>mRNA_A-nodosum_M_contig861.41.1 ID=mRNA_A-nodosum_M_contig861.41.1|Name=mRNA_A-nodosum_M_contig861.41.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at A-nodosum_M_contig861:245643..246098+ (Ascophyllum nodosum dioecious)
AGCAGGCGAGTCGGTATCGGGCTAGGAGGTGGTTGGTGTGAGGAAGGTGA
AACGGACGTACAGGATCAGAACCCGTGTGGCGTCGTGTTTTTGCTCGGCG
TGCCAGAGGTCTCGATACGAGGATTGCCACGTCAACAGAGCGTACCCGAG
TATCGTTCCCGCACTGAGGGACGGTCAAGTAAGGGAAACGATCATCATGG
ACACTGGGGTAGCGCCGGTAGGATATCACCTTTAAGTCTGGACGGAAAAC
ATGTCAGATGGCGACGGTTACTGGGACTCAGTCGCAAGAGAGCGACTCGG
AGGCGGCTTTCAAGTTGTGGGAGGAGCTTGGAAGGGAGGAAGAACCCACA
GTTATTATTGCCCGTTTCGGATAGTGTGTTGCTGTTTAAGTGTGTCCTGC
TTCTTGTGTTTGTAGTCGGAAGTTGTGATGGGCGTAAACGTTTGTTTGAA
GGTCGG
back to top